Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0004070.1

Orthogroup ID

OG0000287

Physical Location & Seq

Genomic Coordinates Reverse (-)

3397 .. 4005

Gene Structure 609 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0004070.1_g000003.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 609 bp

atgttgatttcactgattcctggcgcaacaacctactatcttgctggacttcacaatggatttgaacacttcttctactttgcttctgctctatttgcttgcatgatgctggttgagagcctaatgatgatagttgcgagcatcgtgccgaatttccttatgggcataatagttggttctggattgcaagggattatgttgttatgcggcggattcttccggctaccaaatgatcttccggatcttgtgtggaaatacccattgtaccatattgccttccacaagtatgcattccagggaatgtttaagaatgaatttgaaggaacaacgtttccgaatgatgatcaacttagaatcggtaactctaagtggcttagtggcgacagcattttgagagatatatggcaggtggaaatgggttactctaaatgggttgatcttgttgtcttgctaggaatgatagttctgtatcgagctttgttcttggttatcatcaagatcactgagaaaaggaagactattaccttagctcttctgcccatggctccgaagcaaagcatgcaagtattggtgaatctcaagagagccagcagaatcgtaacaacgtaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0001101 GO:0003002 GO:0003006 GO:0003674 GO:0003824 GO:0005215 GO:0005319 GO:0005342 GO:0005488 GO:0005515 GO:0005575 GO:0005623 GO:0005886 GO:0006810 GO:0006811 GO:0006820 GO:0006869 GO:0006950 GO:0006970 GO:0007275 GO:0007389 GO:0008028 GO:0008150 GO:0008509 GO:0008514 GO:0009611 GO:0009628 GO:0009651 GO:0009653 GO:0009719 GO:0009725 GO:0009737 GO:0009790 GO:0009791 GO:0009793 GO:0009897 GO:0009965 GO:0009986 GO:0010016 GO:0010033 GO:0010051 GO:0010154 GO:0010222 GO:0010588 GO:0010876 GO:0015075 GO:0015245 GO:0015318 GO:0015399 GO:0015405 GO:0015711 GO:0015718 GO:0015849 GO:0015908 GO:0016020 GO:0016021 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0022414 GO:0022804 GO:0022857 GO:0031224 GO:0032501 GO:0032502 GO:0033036 GO:0033993 GO:0034220 GO:0042221 GO:0042623 GO:0042626 GO:0042802 GO:0042803 GO:0043492 GO:0044425 GO:0044459 GO:0044464 GO:0046942 GO:0046943 GO:0046983 GO:0048316 GO:0048366 GO:0048367 GO:0048598 GO:0048608 GO:0048731 GO:0048825 GO:0048826 GO:0048827 GO:0048856 GO:0050896 GO:0051179 GO:0051234 GO:0055085 GO:0061458 GO:0071702 GO:0071944 GO:0080051 GO:0090698 GO:0097305 GO:0098552 GO:0098656 GO:0099402 GO:1901700 GO:1903825 GO:1905039 GO:1905392

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

ABC2_membrane ABC_tran

Protein Analysis

202

Amino Acids

22.93

Weight (kDa)

9.08

Isoelectric Point (pI)

31.76

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000287)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g20390 FvH4_1g20390 FvH4_1g20390 FvH4_1g20390 FvH4_1g20390 FvH4_1g20400 FvH4_1g20400 FvH4_1g20400 FvH4_1g20400 FvH4_1g20400 FvH4_1g20410 FvH4_1g20410 FvH4_6g39250 FvH4_6g39250
malus_domestica	MD00G1036800.v1.1 MD05G1042600.v1.1 MD10G1049900.v1.1
prunus_persica	Prupe.6G191500_v2.0.a1 Prupe.8G064300_v2.0.a1 Prupe.8G064300_v2.0.a1 Prupe.8G064400_v2.0.a1
pyrus_communis	pycom05g03520 pycom10g03500 pycom10g03510 pycom15g28250
rosa_chinensis	RchiOBHm_Chr1g0336561 RchiOBHm_Chr2g0112551 RchiOBHm_Chr2g0112561 RchiOBHm_Chr2g0112631 RchiOBHm_Chr2g0112641 RchiOBHm_Chr2g0153091 RchiOBHm_Chr2g0153111 RchiOBHm_Chr2g0153141 RchiOBHm_Chr2g0153161 RchiOBHm_Chr2g0153171
rosa_laevigata	RLG00000017991 RLG00000017992 RLG00000017995 RLG00000017997 RLG00000020676 RLG00000020677 RLG00000020678 RLG00000020682
rosa_multiflora	Rmu_co8208234.1_g000001 Rmu_co8218328.1_g000001 Rmu_co8425243.1_g000001 Rmu_sc0000218.1_g000037 Rmu_sc0000218.1_g000044 Rmu_sc0000218.1_g000047 Rmu_sc0000218.1_g000052 Rmu_sc0001155.1_g000011 Rmu_sc0001155.1_g000026 Rmu_sc0001155.1_g000029 Rmu_sc0001499.1_g000001 Rmu_sc0001499.1_g000040 Rmu_sc0002401.1_g000032 Rmu_sc0002401.1_g000033 Rmu_sc0004070.1_g000003 Rmu_sc0004070.1_g000004 Rmu_sc0005547.1_g000001 Rmu_sc0006062.1_g000002 Rmu_sc0009780.1_g000005 Rmu_sc0013071.1_g000001 Rmu_sc0013071.1_g000012
rosa_roxburghii	Rroxscaffold_2G00095130 Rroxscaffold_2G00095140 Rroxscaffold_2G00095160 Rroxscaffold_2G00095180 Rroxscaffold_2G00095190 Rroxscaffold_2G00095200 Rroxscaffold_2G00131290 Rroxscaffold_2G00131320 Rroxscaffold_2G00131350
rosa_rugosa	Rorug02G0181500 Rorug02G0181500 Rorug02G0181600 Rorug02G0181700 Rorug02G0437300 Rorug02G0437400
rosa_samantha	Rh1DG154100 Rh2AG235200 Rh2AG235300 Rh2AG235400 Rh2AG235600 Rh2AG235800 Rh2AG499700 Rh2AG499800 Rh2AG500000 Rh2AG500100 Rh2AG500200 Rh2BG248500 Rh2BG248700 Rh2BG248800 Rh2BG511000 Rh2BG511200 Rh2BG511300 Rh2BG511600 Rh2CG239600 Rh2CG239700 Rh2CG239900 Rh2CG240000 Rh2CG485900 Rh2CG486000 Rh2CG486200 Rh2CG486300 Rh2CG486400 Rh2DG242500 Rh2DG242600 Rh2DG242700 Rh2DG242900 Rh2DG243100 Rh2DG522800 Rh2DG523100 Rh2DG523200 Rh2DG523500 Rh2DG523600 Rh5DG200200
rosa_wichuraiana	Rw2G018200 Rw2G018210 Rw2G018230 Rw2G018240 Rw2G041010 Rw2G041020 Rw2G041030 Rw2G041050

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	397
Acc36I	ACCTGC	1 cut(s)	397
AccIII	TCCGGA	1 cut(s)	238
AciI	CCGC	2 cut(s)	207, 210
AclI	AACGTT	1 cut(s)	329
AclWI	GGATC	1 cut(s)	249
AcsI	RAATTY	2 cut(s)	151, 314
AfaI	GTAC	1 cut(s)	266
AgsI	TTSAA	2 cut(s)	65, 320
AjnI	CCWGG	2 cut(s)	19, 294
AloI	GAACNNNNNNTCC	4 cut(s)	316, 348, 447, 479
AluBI	AGCT	2 cut(s)	476, 530
AluI	AGCT	2 cut(s)	476, 530
AlwI	GGATC	1 cut(s)	249
Aor13HI	TCCGGA	1 cut(s)	238
ApoI	RAATTY	2 cut(s)	151, 314
AspLEI	GCGC	1 cut(s)	26
AsuHPI	GGTGA	1 cut(s)	583
BbsI	GAAGAC	1 cut(s)	521
BcgI	CGANNNNNNTGC	2 cut(s)	127, 161
BciT130I	CCWGG	2 cut(s)	21, 296
BclI	TGATCA	1 cut(s)	343
BfaI	CTAG	1 cut(s)	452
BfuAI	ACCTGC	1 cut(s)	397
BisI	GCNGC	1 cut(s)	208
BlsI	GCNGC	1 cut(s)	209
Bme1390I	CCNGG	2 cut(s)	21, 296
BmiI	GGNNCC	1 cut(s)	546
BmrFI	CCNGG	2 cut(s)	21, 296
BmsI	GCATC	2 cut(s)	96, 150
BpiI	GAAGAC	1 cut(s)	521
Bpu10I	CCTNAGC	1 cut(s)	526
BpuEI	CTTGAG	1 cut(s)	563
BsaJI	CCNNGG	2 cut(s)	295, 540
BsaWI	WCCGGW	1 cut(s)	238
BseAI	TCCGGA	1 cut(s)	238
BseBI	CCWGG	2 cut(s)	21, 296
BseDI	CCNNGG	2 cut(s)	295, 540
BseMII	CTCAG	1 cut(s)	495
BsiSI	CCGG	2 cut(s)	220, 239
BsmI	GAATGC	1 cut(s)	290
Bsp13I	TCCGGA	1 cut(s)	238
Bsp143I	GATC	5 cut(s)	232, 241, 343, 436, 498
Bsp19I	CCATGG	1 cut(s)	540
BspACI	CCGC	2 cut(s)	207, 210
BspCNI	CTCAG	1 cut(s)	496
BspEI	TCCGGA	1 cut(s)	238
BspLI	GGNNCC	1 cut(s)	546
BspMI	ACCTGC	1 cut(s)	397
BspPI	GGATC	1 cut(s)	249
BspQI	GCTCTTC	1 cut(s)	537
BssECI	CCNNGG	2 cut(s)	295, 540
BssMI	GATC	5 cut(s)	232, 241, 343, 436, 498
BssT1I	CCWWGG	1 cut(s)	540
Bst2UI	CCWGG	2 cut(s)	21, 296
Bst6I	CTCTTC	1 cut(s)	537
BstAPI	GCANNNNNTGC	1 cut(s)	559
BstC8I	GCNNGC	4 cut(s)	100, 139, 560, 589
BstDEI	CTNAG	5 cut(s)	350, 366, 374, 504, 526
BstDSI	CCRYGG	1 cut(s)	540
BstHHI	GCGC	1 cut(s)	26
BstKTI	GATC	5 cut(s)	235, 244, 346, 439, 501
BstMBI	GATC	5 cut(s)	232, 241, 343, 436, 498
BstMWI	GCNNNNNNNGC	2 cut(s)	95, 559
BstNI	CCWGG	2 cut(s)	21, 296
BstNSI	RCATGY	1 cut(s)	562
BstSCI	CCNGG	2 cut(s)	19, 294
BstV2I	GAAGAC	1 cut(s)	521
BstX2I	RGATCY	1 cut(s)	241
BstYI	RGATCY	1 cut(s)	241
BtgI	CCRYGG	1 cut(s)	540
BtsIMutI	CAGTG	2 cut(s)	11, 501
BveI	ACCTGC	1 cut(s)	397
Cac8I	GCNNGC	4 cut(s)	100, 139, 560, 589
CfoI	GCGC	1 cut(s)	26
Csp6I	GTAC	1 cut(s)	265
CviAII	CATG	3 cut(s)	103, 541, 559
CviJI	RGCY	7 cut(s)	120, 223, 373, 476, 530, 545, 587
CviKI_1	RGCY	7 cut(s)	120, 223, 373, 476, 530, 545, 587
CviQI	GTAC	1 cut(s)	265
DdeI	CTNAG	5 cut(s)	350, 366, 374, 504, 526
DpnI	GATC	5 cut(s)	234, 243, 345, 438, 500
DpnII	GATC	5 cut(s)	232, 241, 343, 436, 498
Eam1104I	CTCTTC	1 cut(s)	537
EarI	CTCTTC	1 cut(s)	537
EciI	GGCGGA	1 cut(s)	225
Eco130I	CCWWGG	1 cut(s)	540
EcoRII	CCWGG	2 cut(s)	19, 294
EcoT14I	CCWWGG	1 cut(s)	540
EcoT22I	ATGCAT	1 cut(s)	292
ErhI	CCWWGG	1 cut(s)	540
FaeI	CATG	3 cut(s)	106, 544, 562
FatI	CATG	3 cut(s)	102, 540, 558
FbaI	TGATCA	1 cut(s)	343
Fnu4HI	GCNGC	1 cut(s)	208
Fsp4HI	GCNGC	1 cut(s)	208
FspBI	CTAG	1 cut(s)	452
GlaI	GCGC	1 cut(s)	25
GluI	GCNGC	1 cut(s)	208
HapII	CCGG	2 cut(s)	220, 239
HhaI	GCGC	1 cut(s)	26
Hin1II	CATG	3 cut(s)	106, 544, 562
Hin6I	GCGC	1 cut(s)	24
HinP1I	GCGC	1 cut(s)	24
HinfI	GANTC	5 cut(s)	16, 213, 354, 574, 594
HpaII	CCGG	2 cut(s)	220, 239
HphI	GGTGA	1 cut(s)	583
Hpy188I	TCNGA	2 cut(s)	336, 549
Hpy188III	TCNNGA	4 cut(s)	180, 239, 496, 580
HpyAV	CCTTC	2 cut(s)	286, 314
HpyCH4IV	ACGT	2 cut(s)	329, 605
HpyCH4V	TGCA	4 cut(s)	102, 187, 290, 562
HpyF10VI	GCNNNNNNNGC	2 cut(s)	95, 559
HpyF3I	CTNAG	5 cut(s)	350, 366, 374, 504, 526
HpySE526I	ACGT	2 cut(s)	329, 605
Hsp92II	CATG	3 cut(s)	106, 544, 562
HspAI	GCGC	1 cut(s)	24
Kpn2I	TCCGGA	1 cut(s)	238
Ksp22I	TGATCA	1 cut(s)	343
Kzo9I	GATC	5 cut(s)	232, 241, 343, 436, 498
LguI	GCTCTTC	1 cut(s)	537
LmnI	GCTCC	1 cut(s)	550
LweI	GCATC	2 cut(s)	96, 150
MaeI	CTAG	1 cut(s)	452
MaeII	ACGT	2 cut(s)	329, 605
MaeIII	GTNAC	3 cut(s)	359, 419, 598
MalI	GATC	5 cut(s)	234, 243, 345, 438, 500
MboI	GATC	5 cut(s)	232, 241, 343, 436, 498
MboII	GAAGA	5 cut(s)	64, 208, 227, 524, 526
MflI	RGATCY	1 cut(s)	241
MluCI	AATT	2 cut(s)	151, 314
Mph1103I	ATGCAT	1 cut(s)	292
MroI	TCCGGA	1 cut(s)	238
MseI	TTAA	1 cut(s)	306
MslI	CAYNNNNRTG	1 cut(s)	285
MspI	CCGG	2 cut(s)	220, 239
MspR9I	CCNGG	2 cut(s)	21, 296
Mva1269I	GAATGC	1 cut(s)	290
MvaI	CCWGG	2 cut(s)	21, 296
MwoI	GCNNNNNNNGC	2 cut(s)	95, 559
NcoI	CCATGG	1 cut(s)	540
NdeII	GATC	5 cut(s)	232, 241, 343, 436, 498
NlaIII	CATG	3 cut(s)	106, 544, 562
NlaIV	GGNNCC	1 cut(s)	546
NsiI	ATGCAT	1 cut(s)	292
NspI	RCATGY	1 cut(s)	562
PaeI	GCATGC	1 cut(s)	562
PaqCI	CACCTGC	1 cut(s)	397
PciSI	GCTCTTC	1 cut(s)	537
PctI	GAATGC	1 cut(s)	290
PfeI	GAWTC	5 cut(s)	16, 213, 354, 574, 594
PkrI	GCNGC	1 cut(s)	209
Psp1406I	AACGTT	1 cut(s)	329
Psp6I	CCWGG	2 cut(s)	19, 294
PspGI	CCWGG	2 cut(s)	19, 294
PspN4I	GGNNCC	1 cut(s)	546
PsuI	RGATCY	1 cut(s)	241
RsaI	GTAC	1 cut(s)	266
RsaNI	GTAC	1 cut(s)	265
RseI	CAYNNNNRTG	1 cut(s)	285
SapI	GCTCTTC	1 cut(s)	537
SaqAI	TTAA	1 cut(s)	306
SatI	GCNGC	1 cut(s)	208
Sau3AI	GATC	5 cut(s)	232, 241, 343, 436, 498
ScrFI	CCNGG	2 cut(s)	21, 296
SetI	ASST	7 cut(s)	35, 332, 411, 478, 527, 532, 608
SfaNI	GCATC	2 cut(s)	96, 150
SmiMI	CAYNNNNRTG	1 cut(s)	285
SmlI	CTYRAG	1 cut(s)	578
SmoI	CTYRAG	1 cut(s)	578
SphI	GCATGC	1 cut(s)	562
Sse9I	AATT	2 cut(s)	151, 314
SsiI	CCGC	2 cut(s)	207, 210
SspMI	CTAG	1 cut(s)	452
StyD4I	CCNGG	2 cut(s)	19, 294
StyI	CCWWGG	1 cut(s)	540
TaiI	ACGT	2 cut(s)	332, 608
TaqI	TCGA	1 cut(s)	472
TasI	AATT	2 cut(s)	151, 314
TauI	GCSGC	1 cut(s)	210
TfiI	GAWTC	5 cut(s)	16, 213, 354, 574, 594
Tru1I	TTAA	1 cut(s)	306
Tru9I	TTAA	1 cut(s)	306
TscAI	CASTG	2 cut(s)	18, 508
TspDTI	ATGAA	1 cut(s)	327
TspRI	CASTG	2 cut(s)	18, 508
XapI	RAATTY	2 cut(s)	151, 314
XceI	RCATGY	1 cut(s)	562
XspI	CTAG	1 cut(s)	452
Zsp2I	ATGCAT	1 cut(s)	292

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.