Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0001499.1

Orthogroup ID

OG0000287

Physical Location & Seq

Genomic Coordinates Forward (+)

109868 .. 110356

Gene Structure 489 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0001499.1_g000040.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 489 bp

atggagtcttcttctccagctagttttcccagatgggcaccaagtccaagctcctcaacagtactattatcacctgcggaagaccccaggtttgaggcaagtgctgatcataatgatcatgattctgtagaagatggcatatcctcattatcttctagtatggacaggattttcccatttagcgttgaagtcaatcgcactactactgctgctgccgccgccgctgcttctgtggttaaaaagtcactagatgatcaaagtgcttatgttagaagcagaagtggtgcttatgttagaagcagaagtggtactatgcttgttcctttgacatgggaggacctgtgggttggagtaggtgatgggaaaggtgggcagagaatgattttgcaggggcttactgggtttgctcaacctggtcaggttttggctattatgggtccttctggctgtggcaaatctacccttttggatgctttagcaggtacttga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0001101 GO:0003002 GO:0003006 GO:0003674 GO:0003824 GO:0005215 GO:0005319 GO:0005342 GO:0005488 GO:0005515 GO:0005575 GO:0005623 GO:0005886 GO:0006810 GO:0006811 GO:0006820 GO:0006869 GO:0006950 GO:0006970 GO:0007275 GO:0007389 GO:0008028 GO:0008150 GO:0008509 GO:0008514 GO:0009611 GO:0009628 GO:0009651 GO:0009653 GO:0009719 GO:0009725 GO:0009737 GO:0009790 GO:0009791 GO:0009793 GO:0009897 GO:0009965 GO:0009986 GO:0010016 GO:0010033 GO:0010051 GO:0010154 GO:0010222 GO:0010588 GO:0010876 GO:0015075 GO:0015245 GO:0015318 GO:0015399 GO:0015405 GO:0015711 GO:0015718 GO:0015849 GO:0015908 GO:0016020 GO:0016021 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0022414 GO:0022804 GO:0022857 GO:0031224 GO:0032501 GO:0032502 GO:0033036 GO:0033993 GO:0034220 GO:0042221 GO:0042623 GO:0042626 GO:0042802 GO:0042803 GO:0043492 GO:0044425 GO:0044459 GO:0044464 GO:0046942 GO:0046943 GO:0046983 GO:0048316 GO:0048366 GO:0048367 GO:0048598 GO:0048608 GO:0048731 GO:0048825 GO:0048826 GO:0048827 GO:0048856 GO:0050896 GO:0051179 GO:0051234 GO:0055085 GO:0061458 GO:0071702 GO:0071944 GO:0080051 GO:0090698 GO:0097305 GO:0098552 GO:0098656 GO:0099402 GO:1901700 GO:1903825 GO:1905039 GO:1905392

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

ABC2_membrane ABC_tran

Protein Analysis

162

Amino Acids

16.89

Weight (kDa)

5.05

Isoelectric Point (pI)

61.6

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000287)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g20390 FvH4_1g20390 FvH4_1g20390 FvH4_1g20390 FvH4_1g20390 FvH4_1g20400 FvH4_1g20400 FvH4_1g20400 FvH4_1g20400 FvH4_1g20400 FvH4_1g20410 FvH4_1g20410 FvH4_6g39250 FvH4_6g39250
malus_domestica	MD00G1036800.v1.1 MD05G1042600.v1.1 MD10G1049900.v1.1
prunus_persica	Prupe.6G191500_v2.0.a1 Prupe.8G064300_v2.0.a1 Prupe.8G064300_v2.0.a1 Prupe.8G064400_v2.0.a1
pyrus_communis	pycom05g03520 pycom10g03500 pycom10g03510 pycom15g28250
rosa_chinensis	RchiOBHm_Chr1g0336561 RchiOBHm_Chr2g0112551 RchiOBHm_Chr2g0112561 RchiOBHm_Chr2g0112631 RchiOBHm_Chr2g0112641 RchiOBHm_Chr2g0153091 RchiOBHm_Chr2g0153111 RchiOBHm_Chr2g0153141 RchiOBHm_Chr2g0153161 RchiOBHm_Chr2g0153171
rosa_laevigata	RLG00000017991 RLG00000017992 RLG00000017995 RLG00000017997 RLG00000020676 RLG00000020677 RLG00000020678 RLG00000020682
rosa_multiflora	Rmu_co8208234.1_g000001 Rmu_co8218328.1_g000001 Rmu_co8425243.1_g000001 Rmu_sc0000218.1_g000037 Rmu_sc0000218.1_g000044 Rmu_sc0000218.1_g000047 Rmu_sc0000218.1_g000052 Rmu_sc0001155.1_g000011 Rmu_sc0001155.1_g000026 Rmu_sc0001155.1_g000029 Rmu_sc0001499.1_g000001 Rmu_sc0001499.1_g000040 Rmu_sc0002401.1_g000032 Rmu_sc0002401.1_g000033 Rmu_sc0004070.1_g000003 Rmu_sc0004070.1_g000004 Rmu_sc0005547.1_g000001 Rmu_sc0006062.1_g000002 Rmu_sc0009780.1_g000005 Rmu_sc0013071.1_g000001 Rmu_sc0013071.1_g000012
rosa_roxburghii	Rroxscaffold_2G00095130 Rroxscaffold_2G00095140 Rroxscaffold_2G00095160 Rroxscaffold_2G00095180 Rroxscaffold_2G00095190 Rroxscaffold_2G00095200 Rroxscaffold_2G00131290 Rroxscaffold_2G00131320 Rroxscaffold_2G00131350
rosa_rugosa	Rorug02G0181500 Rorug02G0181500 Rorug02G0181600 Rorug02G0181700 Rorug02G0437300 Rorug02G0437400
rosa_samantha	Rh1DG154100 Rh2AG235200 Rh2AG235300 Rh2AG235400 Rh2AG235600 Rh2AG235800 Rh2AG499700 Rh2AG499800 Rh2AG500000 Rh2AG500100 Rh2AG500200 Rh2BG248500 Rh2BG248700 Rh2BG248800 Rh2BG511000 Rh2BG511200 Rh2BG511300 Rh2BG511600 Rh2CG239600 Rh2CG239700 Rh2CG239900 Rh2CG240000 Rh2CG485900 Rh2CG486000 Rh2CG486200 Rh2CG486300 Rh2CG486400 Rh2DG242500 Rh2DG242600 Rh2DG242700 Rh2DG242900 Rh2DG243100 Rh2DG522800 Rh2DG523100 Rh2DG523200 Rh2DG523500 Rh2DG523600 Rh5DG200200
rosa_wichuraiana	Rw2G018200 Rw2G018210 Rw2G018230 Rw2G018240 Rw2G041010 Rw2G041020 Rw2G041030 Rw2G041050

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	82
Acc36I	ACCTGC	2 cut(s)	82, 470
AccB1I	GGYRCC	1 cut(s)	37
AciI	CCGC	4 cut(s)	77, 216, 219, 222
AfaI	GTAC	3 cut(s)	63, 310, 484
AgsI	TTSAA	1 cut(s)	188
AjnI	CCWGG	2 cut(s)	86, 412
AluBI	AGCT	2 cut(s)	20, 51
AluI	AGCT	2 cut(s)	20, 51
ApeKI	GCWGC	3 cut(s)	209, 212, 224
ArsI	GACNNNNNNTTYG	2 cut(s)	74, 106
AspS9I	GGNCC	2 cut(s)	337, 437
AsuHPI	GGTGA	2 cut(s)	63, 368
AvaII	GGWCC	2 cut(s)	337, 437
BaeGI	GKGCMC	1 cut(s)	40
BanI	GGYRCC	1 cut(s)	37
BbsI	GAAGAC	1 cut(s)	87
BbvI	GCAGC	3 cut(s)	196, 199, 211
BccI	CCATC	3 cut(s)	27, 128, 353
BciT130I	CCWGG	2 cut(s)	88, 414
BclI	TGATCA	3 cut(s)	106, 115, 253
BfaI	CTAG	3 cut(s)	21, 156, 248
BfmI	CTRYAG	1 cut(s)	126
BfuAI	ACCTGC	2 cut(s)	82, 470
BisI	GCNGC	6 cut(s)	210, 213, 216, 219, 222, 225
BlsI	GCNGC	6 cut(s)	211, 214, 217, 220, 223, 226
BmcAI	AGTACT	1 cut(s)	63
Bme1390I	CCNGG	2 cut(s)	88, 414
Bme18I	GGWCC	2 cut(s)	337, 437
BmgT120I	GGNCC	2 cut(s)	337, 437
BmiI	GGNNCC	2 cut(s)	39, 438
BmrFI	CCNGG	2 cut(s)	88, 414
BmrI	ACTGGG	1 cut(s)	408
BmsI	GCATC	1 cut(s)	460
BmuI	ACTGGG	1 cut(s)	408
BpiI	GAAGAC	1 cut(s)	87
BsaJI	CCNNGG	1 cut(s)	86
BsaXI	ACNNNNNCTCC	2 cut(s)	326, 356
Bse1I	ACTGG	1 cut(s)	403
BseBI	CCWGG	2 cut(s)	88, 414
BseDI	CCNNGG	1 cut(s)	86
BseGI	GGATG	1 cut(s)	475
BseNI	ACTGG	1 cut(s)	403
BseRI	GAGGAG	1 cut(s)	43
BseSI	GKGCMC	1 cut(s)	40
BseXI	GCAGC	3 cut(s)	196, 199, 211
BshNI	GGYRCC	1 cut(s)	37
Bsp1286I	GDGCHC	1 cut(s)	40
Bsp143I	GATC	3 cut(s)	106, 115, 253
BspACI	CCGC	4 cut(s)	77, 216, 219, 222
BspHI	TCATGA	1 cut(s)	118
BspLI	GGNNCC	2 cut(s)	39, 438
BspMI	ACCTGC	2 cut(s)	82, 470
BspT107I	GGYRCC	1 cut(s)	37
BsrI	ACTGG	1 cut(s)	403
BssECI	CCNNGG	1 cut(s)	86
BssMI	GATC	3 cut(s)	106, 115, 253
Bst2UI	CCWGG	2 cut(s)	88, 414
Bst4CI	ACNGT	1 cut(s)	61
BstF5I	GGATG	1 cut(s)	475
BstKTI	GATC	3 cut(s)	109, 118, 256
BstMBI	GATC	3 cut(s)	106, 115, 253
BstMWI	GCNNNNNNNGC	4 cut(s)	215, 218, 221, 224
BstNI	CCWGG	2 cut(s)	88, 414
BstSCI	CCNGG	2 cut(s)	86, 412
BstSFI	CTRYAG	1 cut(s)	126
BstSLI	GKGCMC	1 cut(s)	40
BstV1I	GCAGC	3 cut(s)	196, 199, 211
BstV2I	GAAGAC	1 cut(s)	87
BtsCI	GGATG	1 cut(s)	475
BveI	ACCTGC	2 cut(s)	82, 470
CciI	TCATGA	1 cut(s)	118
Cfr13I	GGNCC	2 cut(s)	337, 437
CsiI	ACCWGGT	1 cut(s)	412
Csp6I	GTAC	3 cut(s)	62, 309, 483
CviAII	CATG	2 cut(s)	119, 330
CviJI	RGCY	5 cut(s)	20, 51, 394, 428, 447
CviKI_1	RGCY	5 cut(s)	20, 51, 394, 428, 447
CviQI	GTAC	3 cut(s)	62, 309, 483
DpnI	GATC	3 cut(s)	108, 117, 255
DpnII	GATC	3 cut(s)	106, 115, 253
Eco47I	GGWCC	2 cut(s)	337, 437
EcoO109I	RGGNCCY	2 cut(s)	337, 437
EcoRII	CCWGG	2 cut(s)	86, 412
FaeI	CATG	2 cut(s)	122, 333
FaiI	YATR	9 cut(s)	111, 120, 140, 161, 267, 291, 314, 331, 434
FalI	AAGNNNNNCTT	2 cut(s)	271, 303
FatI	CATG	2 cut(s)	118, 329
FbaI	TGATCA	3 cut(s)	106, 115, 253
Fnu4HI	GCNGC	6 cut(s)	210, 213, 216, 219, 222, 225
FokI	GGATG	1 cut(s)	482
Fsp4HI	GCNGC	6 cut(s)	210, 213, 216, 219, 222, 225
FspBI	CTAG	3 cut(s)	21, 156, 248
GluI	GCNGC	6 cut(s)	210, 213, 216, 219, 222, 225
Hin1II	CATG	2 cut(s)	122, 333
HinfI	GANTC	2 cut(s)	5, 122
HphI	GGTGA	2 cut(s)	63, 368
Hpy188III	TCNNGA	1 cut(s)	119
HpyAV	CCTTC	1 cut(s)	450
HpyCH4III	ACNGT	1 cut(s)	61
HpyCH4V	TGCA	1 cut(s)	388
HpyF10VI	GCNNNNNNNGC	4 cut(s)	215, 218, 221, 224
Hsp92II	CATG	2 cut(s)	122, 333
Ksp22I	TGATCA	3 cut(s)	106, 115, 253
Kzo9I	GATC	3 cut(s)	106, 115, 253
LmnI	GCTCC	1 cut(s)	56
Lsp1109I	GCAGC	3 cut(s)	196, 199, 211
LweI	GCATC	1 cut(s)	460
MabI	ACCWGGT	1 cut(s)	412
MaeI	CTAG	3 cut(s)	21, 156, 248
MaeIII	GTNAC	1 cut(s)	243
MalI	GATC	3 cut(s)	108, 117, 255
MboI	GATC	3 cut(s)	106, 115, 253
MboII	GAAGA	4 cut(s)	3, 92, 143, 144
MhlI	GDGCHC	1 cut(s)	40
MlyI	GAGTC	1 cut(s)	14
MmeI	TCCRAC	1 cut(s)	328
MnlI	CCTC	4 cut(s)	64, 88, 154, 328
MseI	TTAA	1 cut(s)	237
MspA1I	CMGCKG	1 cut(s)	224
MspR9I	CCNGG	2 cut(s)	88, 414
MvaI	CCWGG	2 cut(s)	88, 414
MwoI	GCNNNNNNNGC	4 cut(s)	215, 218, 221, 224
NdeII	GATC	3 cut(s)	106, 115, 253
NlaIII	CATG	2 cut(s)	122, 333
NlaIV	GGNNCC	2 cut(s)	39, 438
NmuCI	GTSAC	1 cut(s)	243
PagI	TCATGA	1 cut(s)	118
PaqCI	CACCTGC	1 cut(s)	82
PfeI	GAWTC	1 cut(s)	122
PkrI	GCNGC	6 cut(s)	211, 214, 217, 220, 223, 226
PleI	GAGTC	1 cut(s)	13
PpsI	GAGTC	1 cut(s)	13
PpuMI	RGGWCCY	2 cut(s)	337, 437
Psp5II	RGGWCCY	2 cut(s)	337, 437
Psp6I	CCWGG	2 cut(s)	86, 412
PspGI	CCWGG	2 cut(s)	86, 412
PspN4I	GGNNCC	2 cut(s)	39, 438
PspPI	GGNCC	2 cut(s)	337, 437
PspPPI	RGGWCCY	2 cut(s)	337, 437
RsaI	GTAC	3 cut(s)	63, 310, 484
RsaNI	GTAC	3 cut(s)	62, 309, 483
SaqAI	TTAA	1 cut(s)	237
SatI	GCNGC	6 cut(s)	210, 213, 216, 219, 222, 225
Sau3AI	GATC	3 cut(s)	106, 115, 253
Sau96I	GGNCC	2 cut(s)	337, 437
ScaI	AGTACT	1 cut(s)	63
SchI	GAGTC	1 cut(s)	14
ScrFI	CCNGG	2 cut(s)	88, 414
SduI	GDGCHC	1 cut(s)	40
SexAI	ACCWGGT	1 cut(s)	412
SfaNI	GCATC	1 cut(s)	460
SfcI	CTRYAG	1 cut(s)	126
SinI	GGWCC	2 cut(s)	337, 437
SsiI	CCGC	4 cut(s)	77, 216, 219, 222
SspMI	CTAG	3 cut(s)	21, 156, 248
StyD4I	CCNGG	2 cut(s)	86, 412
TaaI	ACNGT	1 cut(s)	61
TatI	WGTACW	1 cut(s)	61
TauI	GCSGC	3 cut(s)	218, 221, 224
TfiI	GAWTC	1 cut(s)	122
Tru1I	TTAA	1 cut(s)	237
Tru9I	TTAA	1 cut(s)	237
TseFI	GTSAC	1 cut(s)	243
TseI	GCWGC	3 cut(s)	209, 212, 224
Tsp45I	GTSAC	1 cut(s)	243
VpaK11BI	GGWCC	2 cut(s)	337, 437
XspI	CTAG	3 cut(s)	21, 156, 248
ZrmI	AGTACT	1 cut(s)	63

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.