Rmu_co8218328.1_g000001

ABC transporter G family member

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_co8218328.1
Physical Location & Seq
Reverse (-)
47 .. 499
453 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_co8218328.1_g000001.1.cds

Sequence Viewer

Length: 453 bp
atgatgattgtagcaagcattgtcccggacttcctcatggggattatcacaggtgcgggaattcaaggagtgatgatcttgaatggaggtttcttccaaaaacctgactatcttccgaagcccttctggagatacccaatgtactatattggattccacaagtattcaaatcaaggttactacaagaatgagtttataggactaacattcccctataatcaagaaggggaaggcatcattactggtgaagatatattgaaaaatatttggcaagtggagttgggctattctaagtgggttgatctatcgattttgtttggaatggtaattgtttacaggctcatgtttttgggaatcataaagtttagtgaaaaggctgtgccaatcatcaaagctcttcttgtcggtgttcccaaagactctgaagcgttcacggataacccatcctcctag

Protein Analysis

150

Amino Acids

17.03

Weight (kDa)

5.77

Isoelectric Point (pI)

21.01

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000287)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g20390 FvH4_1g20390 FvH4_1g20390 FvH4_1g20390 FvH4_1g20390 FvH4_1g20400 FvH4_1g20400 FvH4_1g20400 FvH4_1g20400 FvH4_1g20400 FvH4_1g20410 FvH4_1g20410 FvH4_6g39250 FvH4_6g39250
malus_domestica MD00G1036800.v1.1 MD05G1042600.v1.1 MD10G1049900.v1.1
prunus_persica Prupe.6G191500_v2.0.a1 Prupe.8G064300_v2.0.a1 Prupe.8G064300_v2.0.a1 Prupe.8G064400_v2.0.a1
pyrus_communis pycom05g03520 pycom10g03500 pycom10g03510 pycom15g28250
rosa_chinensis RchiOBHm_Chr1g0336561 RchiOBHm_Chr2g0112551 RchiOBHm_Chr2g0112561 RchiOBHm_Chr2g0112631 RchiOBHm_Chr2g0112641 RchiOBHm_Chr2g0153091 RchiOBHm_Chr2g0153111 RchiOBHm_Chr2g0153141 RchiOBHm_Chr2g0153161 RchiOBHm_Chr2g0153171
rosa_laevigata RLG00000017991 RLG00000017992 RLG00000017995 RLG00000017997 RLG00000020676 RLG00000020677 RLG00000020678 RLG00000020682
rosa_multiflora Rmu_co8208234.1_g000001 Rmu_co8218328.1_g000001 Rmu_co8425243.1_g000001 Rmu_sc0000218.1_g000037 Rmu_sc0000218.1_g000044 Rmu_sc0000218.1_g000047 Rmu_sc0000218.1_g000052 Rmu_sc0001155.1_g000011 Rmu_sc0001155.1_g000026 Rmu_sc0001155.1_g000029 Rmu_sc0001499.1_g000001 Rmu_sc0001499.1_g000040 Rmu_sc0002401.1_g000032 Rmu_sc0002401.1_g000033 Rmu_sc0004070.1_g000003 Rmu_sc0004070.1_g000004 Rmu_sc0005547.1_g000001 Rmu_sc0006062.1_g000002 Rmu_sc0009780.1_g000005 Rmu_sc0013071.1_g000001 Rmu_sc0013071.1_g000012
rosa_roxburghii Rroxscaffold_2G00095130 Rroxscaffold_2G00095140 Rroxscaffold_2G00095160 Rroxscaffold_2G00095180 Rroxscaffold_2G00095190 Rroxscaffold_2G00095200 Rroxscaffold_2G00131290 Rroxscaffold_2G00131320 Rroxscaffold_2G00131350
rosa_rugosa Rorug02G0181500 Rorug02G0181500 Rorug02G0181600 Rorug02G0181700 Rorug02G0437300 Rorug02G0437400
rosa_samantha Rh1DG154100 Rh2AG235200 Rh2AG235300 Rh2AG235400 Rh2AG235600 Rh2AG235800 Rh2AG499700 Rh2AG499800 Rh2AG500000 Rh2AG500100 Rh2AG500200 Rh2BG248500 Rh2BG248700 Rh2BG248800 Rh2BG511000 Rh2BG511200 Rh2BG511300 Rh2BG511600 Rh2CG239600 Rh2CG239700 Rh2CG239900 Rh2CG240000 Rh2CG485900 Rh2CG486000 Rh2CG486200 Rh2CG486300 Rh2CG486400 Rh2DG242500 Rh2DG242600 Rh2DG242700 Rh2DG242900 Rh2DG243100 Rh2DG522800 Rh2DG523100 Rh2DG523200 Rh2DG523500 Rh2DG523600 Rh5DG200200
rosa_wichuraiana Rw2G018200 Rw2G018210 Rw2G018230 Rw2G018240 Rw2G041010 Rw2G041020 Rw2G041030 Rw2G041050

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 56
AcsI RAATTY 1 cut(s) 60
AcuI CTGAAG 1 cut(s) 444
AfaI GTAC 1 cut(s) 143
AgsI TTSAA 4 cut(s) 65, 82, 168, 259
AluBI AGCT 1 cut(s) 395
AluI AGCT 1 cut(s) 395
ApoI RAATTY 1 cut(s) 60
Asp700I GAANNNNTTC 1 cut(s) 122
AsuC2I CCSGG 1 cut(s) 26
AsuHPI GGTGA 1 cut(s) 257
BccI CCATC 1 cut(s) 451
BcnI CCSGG 1 cut(s) 26
BfaI CTAG 1 cut(s) 451
Bme1390I CCNGG 1 cut(s) 26
BmrFI CCNGG 1 cut(s) 26
BmsI GCATC 1 cut(s) 243
BpmI CTGGAG 1 cut(s) 148
BpuMI CCSGG 1 cut(s) 26
Bsa29I ATCGAT 1 cut(s) 308
BsaXI ACNNNNNCTCC 1 cut(s) 431
Bse1I ACTGG 1 cut(s) 247
BseCI ATCGAT 1 cut(s) 308
BseGI GGATG 1 cut(s) 443
BseNI ACTGG 1 cut(s) 247
BshVI ATCGAT 1 cut(s) 308
BsiSI CCGG 1 cut(s) 26
BslFI GGGAC 1 cut(s) 8
BsmFI GGGAC 1 cut(s) 8
Bsp143I GATC 2 cut(s) 75, 301
BspACI CCGC 1 cut(s) 56
BspDI ATCGAT 1 cut(s) 308
BspQI GCTCTTC 1 cut(s) 402
BsrI ACTGG 1 cut(s) 247
BssMI GATC 2 cut(s) 75, 301
Bst6I CTCTTC 1 cut(s) 402
BstC8I GCNNGC 1 cut(s) 16
BstDEI CTNAG 1 cut(s) 291
BstF5I GGATG 1 cut(s) 443
BstKTI GATC 2 cut(s) 78, 304
BstMBI GATC 2 cut(s) 75, 301
BstSCI CCNGG 1 cut(s) 24
Bsu15I ATCGAT 1 cut(s) 308
BsuTUI ATCGAT 1 cut(s) 308
BtsCI GGATG 1 cut(s) 443
Cac8I GCNNGC 1 cut(s) 16
ClaI ATCGAT 1 cut(s) 308
Csp6I GTAC 1 cut(s) 142
CviAII CATG 2 cut(s) 37, 343
CviJI RGCY 5 cut(s) 121, 285, 340, 377, 395
CviKI_1 RGCY 5 cut(s) 121, 285, 340, 377, 395
CviQI GTAC 1 cut(s) 142
DdeI CTNAG 1 cut(s) 291
DpnI GATC 2 cut(s) 77, 303
DpnII GATC 2 cut(s) 75, 301
Eam1104I CTCTTC 1 cut(s) 402
EarI CTCTTC 1 cut(s) 402
Eco57I CTGAAG 1 cut(s) 444
EcoRI GAATTC 1 cut(s) 60
FaeI CATG 2 cut(s) 40, 346
FaiI YATR 7 cut(s) 38, 147, 197, 216, 254, 344, 359
FalI AAGNNNNNCTT 2 cut(s) 384, 416
FaqI GGGAC 1 cut(s) 8
FatI CATG 2 cut(s) 36, 342
FauI CCCGC 1 cut(s) 49
FokI GGATG 1 cut(s) 430
FspBI CTAG 1 cut(s) 451
GsuI CTGGAG 1 cut(s) 148
HapII CCGG 1 cut(s) 26
Hin1II CATG 2 cut(s) 40, 346
HinfI GANTC 3 cut(s) 153, 354, 419
HpaII CCGG 1 cut(s) 26
HphI GGTGA 1 cut(s) 257
Hpy166II GTNNAC 2 cut(s) 334, 432
Hpy188I TCNGA 2 cut(s) 117, 424
Hpy188III TCNNGA 3 cut(s) 79, 127, 221
Hpy8I GTNNAC 2 cut(s) 334, 432
HpyAV CCTTC 3 cut(s) 133, 218, 224
HpyF3I CTNAG 1 cut(s) 291
Hsp92II CATG 2 cut(s) 40, 346
Kzo9I GATC 2 cut(s) 75, 301
LguI GCTCTTC 1 cut(s) 402
LpnPI CCDG 6 cut(s) 36, 39, 112, 117, 228, 322
LweI GCATC 1 cut(s) 243
MaeI CTAG 1 cut(s) 451
MaeIII GTNAC 1 cut(s) 176
MalI GATC 2 cut(s) 77, 303
MboI GATC 2 cut(s) 75, 301
MboII GAAGA 4 cut(s) 85, 104, 260, 389
MluCI AATT 2 cut(s) 60, 327
MlyI GAGTC 1 cut(s) 413
MnlI CCTC 2 cut(s) 44, 80
MroXI GAANNNNTTC 1 cut(s) 122
MspI CCGG 1 cut(s) 26
MspR9I CCNGG 1 cut(s) 26
NciI CCSGG 1 cut(s) 26
NdeII GATC 2 cut(s) 75, 301
NlaIII CATG 2 cut(s) 40, 346
PciSI GCTCTTC 1 cut(s) 402
PdmI GAANNNNTTC 1 cut(s) 122
PfeI GAWTC 2 cut(s) 153, 354
PfoI TCCNGGA 1 cut(s) 24
PleI GAGTC 1 cut(s) 413
PpsI GAGTC 1 cut(s) 413
RsaI GTAC 1 cut(s) 143
RsaNI GTAC 1 cut(s) 142
SapI GCTCTTC 1 cut(s) 402
Sau3AI GATC 2 cut(s) 75, 301
SchI GAGTC 1 cut(s) 413
ScrFI CCNGG 1 cut(s) 26
SetI ASST 5 cut(s) 55, 91, 106, 178, 397
SfaNI GCATC 1 cut(s) 243
Sse9I AATT 2 cut(s) 60, 327
SsiI CCGC 1 cut(s) 56
SspI AATATT 1 cut(s) 265
SspMI CTAG 1 cut(s) 451
StyD4I CCNGG 1 cut(s) 24
TaqI TCGA 1 cut(s) 308
TasI AATT 2 cut(s) 60, 327
TatI WGTACW 1 cut(s) 141
TfiI GAWTC 2 cut(s) 153, 354
TspGWI ACGGA 1 cut(s) 449
XapI RAATTY 1 cut(s) 60
XmnI GAANNNNTTC 1 cut(s) 122
XspI CTAG 1 cut(s) 451
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.