Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2C

Orthogroup ID

OG0000287

Physical Location & Seq

Genomic Coordinates Forward (+)

65203221 .. 65204542

Gene Structure 1322 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2CG486000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 750 bp

ATGTTGTTCTTGATAATAACTTCAAAAATAAGTTTGATCTCTTGTATATGTCAGGTATTTCAACGAGAGAGATTAAACGGGCATTATGGTGTTAGTGCATTTGTTTTTGGCAACACCTTTTCCTCGGTGCCTTTCTTGATGTTAATTTCACTGATTCCTGGAGCAACAGCATATTACGTTACTGGGCTTCACAGTGGATTTGAACACTTCCTCTACTTTGCTTGTGCACTATTTGCTTGCATGATGCTGGTTGAGAGCCTAATGATGATAGTTGCGAGCATCGTGCCGACTTTCCTCATGGGCATAATAGCTGGTGCTGGAATCCAAGGTGTGATGATGTTATGCGGTGGATTCTTCCAGCTACCAAATGATCTTCCAGATGTTGTGTTCAAGTACCCATTATATTACATTTCTTTCCACAAGTATGCATTCCAGGGAATGTATAAGAATGAATTTGCAGGAACAAGATATCCGAACGACAATCAGCTCGGAATGAGTTCCTCTGAATGGCTCAGTGGTGAACGCATTTTGAAAGATATATGGCAGCTGGAAACCGGTTACTCCAAATGGGTAGATCTGGCTATCTTGCTAGGAATGGTAGTTCTGTATCGAGTTTTGTTCTTCGTTATCATCAAGACCGCTGAGAAAATGAAGACTATTACCTCATTTGTTCTGTCCGTGGCTCCCAAGCGAAGCAAGCAAGTACTGGTGAATCCCCCCTCTACTCCATTGCATGGCGACAGCGCTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0001101 GO:0003002 GO:0003006 GO:0003674 GO:0003824 GO:0005215 GO:0005319 GO:0005342 GO:0005488 GO:0005515 GO:0005575 GO:0005623 GO:0005886 GO:0006810 GO:0006811 GO:0006820 GO:0006869 GO:0006950 GO:0006970 GO:0007275 GO:0007389 GO:0008028 GO:0008150 GO:0008509 GO:0008514 GO:0009611 GO:0009628 GO:0009651 GO:0009653 GO:0009719 GO:0009725 GO:0009737 GO:0009790 GO:0009791 GO:0009793 GO:0009897 GO:0009965 GO:0009986 GO:0010016 GO:0010033 GO:0010051 GO:0010154 GO:0010222 GO:0010588 GO:0010876 GO:0015075 GO:0015245 GO:0015318 GO:0015399 GO:0015405 GO:0015711 GO:0015718 GO:0015849 GO:0015908 GO:0016020 GO:0016021 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0022414 GO:0022804 GO:0022857 GO:0031224 GO:0032501 GO:0032502 GO:0033036 GO:0033993 GO:0034220 GO:0042221 GO:0042623 GO:0042626 GO:0042802 GO:0042803 GO:0043492 GO:0044425 GO:0044459 GO:0044464 GO:0046942 GO:0046943 GO:0046983 GO:0048316 GO:0048366 GO:0048367 GO:0048598 GO:0048608 GO:0048731 GO:0048825 GO:0048826 GO:0048827 GO:0048856 GO:0050896 GO:0051179 GO:0051234 GO:0055085 GO:0061458 GO:0071702 GO:0071944 GO:0080051 GO:0090698 GO:0097305 GO:0098552 GO:0098656 GO:0099402 GO:1901700 GO:1903825 GO:1905039 GO:1905392

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

ABC2_membrane ABC_tran

Protein Analysis

249

Amino Acids

27.85

Weight (kDa)

8.54

Isoelectric Point (pI)

31.1

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ABC2_membrane	PF01061	11 - 152	8.2e-24	ABC-2 type transporter

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000287)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g20390 FvH4_1g20390 FvH4_1g20390 FvH4_1g20390 FvH4_1g20390 FvH4_1g20400 FvH4_1g20400 FvH4_1g20400 FvH4_1g20400 FvH4_1g20400 FvH4_1g20410 FvH4_1g20410 FvH4_6g39250 FvH4_6g39250
malus_domestica	MD00G1036800.v1.1 MD05G1042600.v1.1 MD10G1049900.v1.1
prunus_persica	Prupe.6G191500_v2.0.a1 Prupe.8G064300_v2.0.a1 Prupe.8G064300_v2.0.a1 Prupe.8G064400_v2.0.a1
pyrus_communis	pycom05g03520 pycom10g03500 pycom10g03510 pycom15g28250
rosa_chinensis	RchiOBHm_Chr1g0336561 RchiOBHm_Chr2g0112551 RchiOBHm_Chr2g0112561 RchiOBHm_Chr2g0112631 RchiOBHm_Chr2g0112641 RchiOBHm_Chr2g0153091 RchiOBHm_Chr2g0153111 RchiOBHm_Chr2g0153141 RchiOBHm_Chr2g0153161 RchiOBHm_Chr2g0153171
rosa_laevigata	RLG00000017991 RLG00000017992 RLG00000017995 RLG00000017997 RLG00000020676 RLG00000020677 RLG00000020678 RLG00000020682
rosa_multiflora	Rmu_co8208234.1_g000001 Rmu_co8218328.1_g000001 Rmu_co8425243.1_g000001 Rmu_sc0000218.1_g000037 Rmu_sc0000218.1_g000044 Rmu_sc0000218.1_g000047 Rmu_sc0000218.1_g000052 Rmu_sc0001155.1_g000011 Rmu_sc0001155.1_g000026 Rmu_sc0001155.1_g000029 Rmu_sc0001499.1_g000001 Rmu_sc0001499.1_g000040 Rmu_sc0002401.1_g000032 Rmu_sc0002401.1_g000033 Rmu_sc0004070.1_g000003 Rmu_sc0004070.1_g000004 Rmu_sc0005547.1_g000001 Rmu_sc0006062.1_g000002 Rmu_sc0009780.1_g000005 Rmu_sc0013071.1_g000001 Rmu_sc0013071.1_g000012
rosa_roxburghii	Rroxscaffold_2G00095130 Rroxscaffold_2G00095140 Rroxscaffold_2G00095160 Rroxscaffold_2G00095180 Rroxscaffold_2G00095190 Rroxscaffold_2G00095200 Rroxscaffold_2G00131290 Rroxscaffold_2G00131320 Rroxscaffold_2G00131350
rosa_rugosa	Rorug02G0181500 Rorug02G0181500 Rorug02G0181600 Rorug02G0181700 Rorug02G0437300 Rorug02G0437400
rosa_samantha	Rh1DG154100 Rh2AG235200 Rh2AG235300 Rh2AG235400 Rh2AG235600 Rh2AG235800 Rh2AG499700 Rh2AG499800 Rh2AG500000 Rh2AG500100 Rh2AG500200 Rh2BG248500 Rh2BG248700 Rh2BG248800 Rh2BG511000 Rh2BG511200 Rh2BG511300 Rh2BG511600 Rh2CG239600 Rh2CG239700 Rh2CG239900 Rh2CG240000 Rh2CG485900 Rh2CG486000 Rh2CG486200 Rh2CG486300 Rh2CG486400 Rh2DG242500 Rh2DG242600 Rh2DG242700 Rh2DG242900 Rh2DG243100 Rh2DG522800 Rh2DG523100 Rh2DG523200 Rh2DG523500 Rh2DG523600 Rh5DG200200
rosa_wichuraiana	Rw2G018200 Rw2G018210 Rw2G018230 Rw2G018240 Rw2G041010 Rw2G041020 Rw2G041030 Rw2G041050

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	127
AccB7I	CCANNNNNTGG	1 cut(s)	734
AciI	CCGC	2 cut(s)	345, 639
AcsI	RAATTY	1 cut(s)	452
AfaI	GTAC	2 cut(s)	395, 705
AfeI	AGCGCT	1 cut(s)	745
AfiI	CCNNNNNNNGG	2 cut(s)	507, 734
AgeI	ACCGGT	1 cut(s)	554
AgsI	TTSAA	5 cut(s)	24, 62, 203, 391, 532
AjnI	CCWGG	2 cut(s)	157, 432
AloI	GAACNNNNNNTCC	4 cut(s)	454, 486, 585, 617
AluBI	AGCT	4 cut(s)	311, 361, 487, 547
AluI	AGCT	4 cut(s)	311, 361, 487, 547
Alw21I	GWGCWC	1 cut(s)	229
Alw44I	GTGCAC	1 cut(s)	225
Aor51HI	AGCGCT	1 cut(s)	745
ApaLI	GTGCAC	1 cut(s)	225
ApeKI	GCWGC	1 cut(s)	544
ApoI	RAATTY	1 cut(s)	452
AsiGI	ACCGGT	1 cut(s)	554
Asp700I	GAANNNNTTC	1 cut(s)	496
AspLEI	GCGC	1 cut(s)	746
AsuHPI	GGTGA	2 cut(s)	530, 721
BaeGI	GKGCMC	1 cut(s)	229
BanI	GGYRCC	1 cut(s)	127
BbsI	GAAGAC	1 cut(s)	659
Bbv12I	GWGCWC	1 cut(s)	229
BbvI	GCAGC	1 cut(s)	556
BcgI	CGANNNNNNTGC	2 cut(s)	265, 299
BciT130I	CCWGG	2 cut(s)	159, 434
BfaI	CTAG	1 cut(s)	590
BfoI	RGCGCY	1 cut(s)	747
BglII	AGATCT	1 cut(s)	574
BisI	GCNGC	1 cut(s)	545
BlsI	GCNGC	1 cut(s)	546
BmcAI	AGTACT	1 cut(s)	705
Bme1390I	CCNGG	2 cut(s)	159, 434
BmiI	GGNNCC	2 cut(s)	129, 684
BmrFI	CCNGG	2 cut(s)	159, 434
BmrI	ACTGGG	1 cut(s)	192
BmsI	GCATC	2 cut(s)	234, 288
BmuI	ACTGGG	1 cut(s)	192
BpiI	GAAGAC	1 cut(s)	659
BpmI	CTGGAG	1 cut(s)	180
BsaJI	CCNNGG	4 cut(s)	123, 325, 433, 678
BsaWI	WCCGGW	1 cut(s)	554
Bsc4I	CCNNNNNNNGG	2 cut(s)	507, 734
Bse118I	RCCGGY	1 cut(s)	554
Bse1I	ACTGG	2 cut(s)	187, 711
Bse3DI	GCAATG	1 cut(s)	728
BseBI	CCWGG	2 cut(s)	159, 434
BseDI	CCNNGG	4 cut(s)	123, 325, 433, 678
BseLI	CCNNNNNNNGG	2 cut(s)	507, 734
BseMI	GCAATG	1 cut(s)	728
BseMII	CTCAG	2 cut(s)	526, 633
BseNI	ACTGG	2 cut(s)	187, 711
BseSI	GKGCMC	1 cut(s)	229
BseXI	GCAGC	1 cut(s)	556
BshNI	GGYRCC	1 cut(s)	127
BshTI	ACCGGT	1 cut(s)	554
BsiHKAI	GWGCWC	1 cut(s)	229
BsiSI	CCGG	1 cut(s)	555
BslI	CCNNNNNNNGG	2 cut(s)	507, 734
BsmI	GAATGC	1 cut(s)	428
Bsp1286I	GDGCHC	1 cut(s)	229
Bsp143I	GATC	3 cut(s)	36, 370, 574
BspACI	CCGC	2 cut(s)	345, 639
BspCNI	CTCAG	2 cut(s)	525, 634
BspLI	GGNNCC	2 cut(s)	129, 684
BspT107I	GGYRCC	1 cut(s)	127
BsrDI	GCAATG	1 cut(s)	728
BsrFI	RCCGGY	1 cut(s)	554
BsrI	ACTGG	2 cut(s)	187, 711
BssAI	RCCGGY	1 cut(s)	554
BssECI	CCNNGG	4 cut(s)	123, 325, 433, 678
BssMI	GATC	3 cut(s)	36, 370, 574
BssT1I	CCWWGG	1 cut(s)	325
Bst2UI	CCWGG	2 cut(s)	159, 434
Bst4CI	ACNGT	1 cut(s)	194
BstAPI	GCANNNNNTGC	1 cut(s)	233
BstC8I	GCNNGC	3 cut(s)	238, 277, 698
BstDEI	CTNAG	3 cut(s)	512, 642, 747
BstDSI	CCRYGG	1 cut(s)	678
BstH2I	RGCGCY	1 cut(s)	747
BstHHI	GCGC	1 cut(s)	746
BstKTI	GATC	3 cut(s)	39, 373, 577
BstMBI	GATC	3 cut(s)	36, 370, 574
BstMWI	GCNNNNNNNGC	2 cut(s)	233, 697
BstNI	CCWGG	2 cut(s)	159, 434
BstSCI	CCNGG	2 cut(s)	157, 432
BstSLI	GKGCMC	1 cut(s)	229
BstV1I	GCAGC	1 cut(s)	556
BstV2I	GAAGAC	1 cut(s)	659
BstX2I	RGATCY	1 cut(s)	574
BstYI	RGATCY	1 cut(s)	574
BtgI	CCRYGG	1 cut(s)	678
BtsIMutI	CAGTG	3 cut(s)	149, 199, 520
Cac8I	GCNNGC	3 cut(s)	238, 277, 698
CfoI	GCGC	1 cut(s)	746
Cfr10I	RCCGGY	1 cut(s)	554
Csp6I	GTAC	2 cut(s)	394, 704
CspAI	ACCGGT	1 cut(s)	554
CviAII	CATG	3 cut(s)	241, 298, 734
CviJI	RGCY	9 cut(s)	187, 258, 311, 361, 487, 511, 547, 581, 683
CviKI_1	RGCY	9 cut(s)	187, 258, 311, 361, 487, 511, 547, 581, 683
CviQI	GTAC	2 cut(s)	394, 704
DdeI	CTNAG	3 cut(s)	512, 642, 747
DpnI	GATC	3 cut(s)	38, 372, 576
DpnII	GATC	3 cut(s)	36, 370, 574
Eco130I	CCWWGG	1 cut(s)	325
Eco32I	GATATC	1 cut(s)	470
Eco47III	AGCGCT	1 cut(s)	745
EcoRII	CCWGG	2 cut(s)	157, 432
EcoRV	GATATC	1 cut(s)	470
EcoT14I	CCWWGG	1 cut(s)	325
EcoT22I	ATGCAT	1 cut(s)	430
ErhI	CCWWGG	1 cut(s)	325
FaeI	CATG	3 cut(s)	244, 301, 737
FatI	CATG	3 cut(s)	240, 297, 733
Fnu4HI	GCNGC	1 cut(s)	545
Fsp4HI	GCNGC	1 cut(s)	545
FspBI	CTAG	1 cut(s)	590
GlaI	GCGC	1 cut(s)	745
GluI	GCNGC	1 cut(s)	545
GsuI	CTGGAG	1 cut(s)	180
HaeII	RGCGCY	1 cut(s)	747
HapII	CCGG	1 cut(s)	555
HhaI	GCGC	1 cut(s)	746
Hin1II	CATG	3 cut(s)	244, 301, 737
Hin6I	GCGC	1 cut(s)	744
HinP1I	GCGC	1 cut(s)	744
HinfI	GANTC	4 cut(s)	154, 321, 351, 712
HpaII	CCGG	1 cut(s)	555
HphI	GGTGA	2 cut(s)	530, 721
Hpy166II	GTNNAC	2 cut(s)	227, 521
Hpy188I	TCNGA	3 cut(s)	474, 491, 505
Hpy188III	TCNNGA	4 cut(s)	10, 136, 377, 634
Hpy8I	GTNNAC	2 cut(s)	227, 521
HpyCH4III	ACNGT	1 cut(s)	194
HpyCH4IV	ACGT	1 cut(s)	177
HpyCH4V	TGCA	6 cut(s)	98, 227, 240, 428, 458, 733
HpyF10VI	GCNNNNNNNGC	2 cut(s)	233, 697
HpyF3I	CTNAG	3 cut(s)	512, 642, 747
HpySE526I	ACGT	1 cut(s)	177
Hsp92II	CATG	3 cut(s)	244, 301, 737
HspAI	GCGC	1 cut(s)	744
Kzo9I	GATC	3 cut(s)	36, 370, 574
LmnI	GCTCC	2 cut(s)	161, 688
Lsp1109I	GCAGC	1 cut(s)	556
LweI	GCATC	2 cut(s)	234, 288
MaeI	CTAG	1 cut(s)	590
MaeII	ACGT	1 cut(s)	177
MaeIII	GTNAC	2 cut(s)	178, 557
MalI	GATC	3 cut(s)	38, 372, 576
MboI	GATC	3 cut(s)	36, 370, 574
MboII	GAAGA	4 cut(s)	346, 365, 613, 664
MflI	RGATCY	1 cut(s)	574
MhlI	GDGCHC	1 cut(s)	229
MluCI	AATT	2 cut(s)	144, 452
MnlI	CCTC	6 cut(s)	133, 221, 305, 511, 673, 730
Mph1103I	ATGCAT	1 cut(s)	430
MroXI	GAANNNNTTC	1 cut(s)	496
MseI	TTAA	2 cut(s)	74, 143
MslI	CAYNNNNRTG	2 cut(s)	87, 423
MspA1I	CMGCKG	2 cut(s)	547, 641
MspI	CCGG	1 cut(s)	555
MspR9I	CCNGG	2 cut(s)	159, 434
Mva1269I	GAATGC	1 cut(s)	428
MvaI	CCWGG	2 cut(s)	159, 434
MwoI	GCNNNNNNNGC	2 cut(s)	233, 697
NdeII	GATC	3 cut(s)	36, 370, 574
NlaIII	CATG	3 cut(s)	244, 301, 737
NlaIV	GGNNCC	2 cut(s)	129, 684
NsiI	ATGCAT	1 cut(s)	430
PctI	GAATGC	1 cut(s)	428
PdmI	GAANNNNTTC	1 cut(s)	496
PfeI	GAWTC	4 cut(s)	154, 321, 351, 712
PflMI	CCANNNNNTGG	1 cut(s)	734
PfoI	TCCNGGA	1 cut(s)	157
PinAI	ACCGGT	1 cut(s)	554
PkrI	GCNGC	1 cut(s)	546
Psp6I	CCWGG	2 cut(s)	157, 432
PspGI	CCWGG	2 cut(s)	157, 432
PspN4I	GGNNCC	2 cut(s)	129, 684
PsuI	RGATCY	1 cut(s)	574
PvuII	CAGCTG	1 cut(s)	547
RsaI	GTAC	2 cut(s)	395, 705
RsaNI	GTAC	2 cut(s)	394, 704
RseI	CAYNNNNRTG	2 cut(s)	87, 423
SaqAI	TTAA	2 cut(s)	74, 143
SatI	GCNGC	1 cut(s)	545
Sau3AI	GATC	3 cut(s)	36, 370, 574
ScaI	AGTACT	1 cut(s)	705
ScrFI	CCNGG	2 cut(s)	159, 434
SduI	GDGCHC	1 cut(s)	229
SetI	ASST	9 cut(s)	57, 119, 180, 313, 331, 363, 489, 549, 665
SfaNI	GCATC	2 cut(s)	234, 288
SmiMI	CAYNNNNRTG	2 cut(s)	87, 423
Sse9I	AATT	2 cut(s)	144, 452
SsiI	CCGC	2 cut(s)	345, 639
SspMI	CTAG	1 cut(s)	590
StyD4I	CCNGG	2 cut(s)	157, 432
StyI	CCWWGG	1 cut(s)	325
TaaI	ACNGT	1 cut(s)	194
TaiI	ACGT	1 cut(s)	180
TaqI	TCGA	1 cut(s)	610
TasI	AATT	2 cut(s)	144, 452
TatI	WGTACW	1 cut(s)	703
TfiI	GAWTC	4 cut(s)	154, 321, 351, 712
Tru1I	TTAA	2 cut(s)	74, 143
Tru9I	TTAA	2 cut(s)	74, 143
TscAI	CASTG	3 cut(s)	156, 199, 520
TseI	GCWGC	1 cut(s)	544
TspDTI	ATGAA	2 cut(s)	465, 665
TspGWI	ACGGA	1 cut(s)	667
TspRI	CASTG	3 cut(s)	156, 199, 520
Van91I	CCANNNNNTGG	1 cut(s)	734
VneI	GTGCAC	1 cut(s)	225
XapI	RAATTY	1 cut(s)	452
XmnI	GAANNNNTTC	1 cut(s)	496
XspI	CTAG	1 cut(s)	590
ZrmI	AGTACT	1 cut(s)	705
Zsp2I	ATGCAT	1 cut(s)	430

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.