Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0005547.1

Orthogroup ID

OG0000287

Physical Location & Seq

Genomic Coordinates Reverse (-)

68 .. 355

Gene Structure 288 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0005547.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 288 bp

atgacaacattaacagtaagggaagttgtgtattactcggctcagctccaactacctaacaccatgtcaaaagcagaaaagaaggaaagagctgagacaacaataagggagatgggcttgcaagactccatgaacacaagaattggaggttggagtaaaaaaggcctcagtggtgggcaaaagagaagagtcagcatctgcgttgaaatcttaactcgtccaaagcttctattccttgatgagcctactagtggactagacagtgcacagcatattaccatgtcatga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0001101 GO:0003002 GO:0003006 GO:0003674 GO:0003824 GO:0005215 GO:0005319 GO:0005342 GO:0005488 GO:0005515 GO:0005575 GO:0005623 GO:0005886 GO:0006810 GO:0006811 GO:0006820 GO:0006869 GO:0006950 GO:0006970 GO:0007275 GO:0007389 GO:0008028 GO:0008150 GO:0008509 GO:0008514 GO:0009611 GO:0009628 GO:0009651 GO:0009653 GO:0009719 GO:0009725 GO:0009737 GO:0009790 GO:0009791 GO:0009793 GO:0009897 GO:0009965 GO:0009986 GO:0010016 GO:0010033 GO:0010051 GO:0010154 GO:0010222 GO:0010588 GO:0010876 GO:0015075 GO:0015245 GO:0015318 GO:0015399 GO:0015405 GO:0015711 GO:0015718 GO:0015849 GO:0015908 GO:0016020 GO:0016021 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0022414 GO:0022804 GO:0022857 GO:0031224 GO:0032501 GO:0032502 GO:0033036 GO:0033993 GO:0034220 GO:0042221 GO:0042623 GO:0042626 GO:0042802 GO:0042803 GO:0043492 GO:0044425 GO:0044459 GO:0044464 GO:0046942 GO:0046943 GO:0046983 GO:0048316 GO:0048366 GO:0048367 GO:0048598 GO:0048608 GO:0048731 GO:0048825 GO:0048826 GO:0048827 GO:0048856 GO:0050896 GO:0051179 GO:0051234 GO:0055085 GO:0061458 GO:0071702 GO:0071944 GO:0080051 GO:0090698 GO:0097305 GO:0098552 GO:0098656 GO:0099402 GO:1901700 GO:1903825 GO:1905039 GO:1905392

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

ABC2_membrane ABC_tran

Protein Analysis

95

Amino Acids

10.65

Weight (kDa)

9.51

Isoelectric Point (pI)

56.04

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000287)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g20390 FvH4_1g20390 FvH4_1g20390 FvH4_1g20390 FvH4_1g20390 FvH4_1g20400 FvH4_1g20400 FvH4_1g20400 FvH4_1g20400 FvH4_1g20400 FvH4_1g20410 FvH4_1g20410 FvH4_6g39250 FvH4_6g39250
malus_domestica	MD00G1036800.v1.1 MD05G1042600.v1.1 MD10G1049900.v1.1
prunus_persica	Prupe.6G191500_v2.0.a1 Prupe.8G064300_v2.0.a1 Prupe.8G064300_v2.0.a1 Prupe.8G064400_v2.0.a1
pyrus_communis	pycom05g03520 pycom10g03500 pycom10g03510 pycom15g28250
rosa_chinensis	RchiOBHm_Chr1g0336561 RchiOBHm_Chr2g0112551 RchiOBHm_Chr2g0112561 RchiOBHm_Chr2g0112631 RchiOBHm_Chr2g0112641 RchiOBHm_Chr2g0153091 RchiOBHm_Chr2g0153111 RchiOBHm_Chr2g0153141 RchiOBHm_Chr2g0153161 RchiOBHm_Chr2g0153171
rosa_laevigata	RLG00000017991 RLG00000017992 RLG00000017995 RLG00000017997 RLG00000020676 RLG00000020677 RLG00000020678 RLG00000020682
rosa_multiflora	Rmu_co8208234.1_g000001 Rmu_co8218328.1_g000001 Rmu_co8425243.1_g000001 Rmu_sc0000218.1_g000037 Rmu_sc0000218.1_g000044 Rmu_sc0000218.1_g000047 Rmu_sc0000218.1_g000052 Rmu_sc0001155.1_g000011 Rmu_sc0001155.1_g000026 Rmu_sc0001155.1_g000029 Rmu_sc0001499.1_g000001 Rmu_sc0001499.1_g000040 Rmu_sc0002401.1_g000032 Rmu_sc0002401.1_g000033 Rmu_sc0004070.1_g000003 Rmu_sc0004070.1_g000004 Rmu_sc0005547.1_g000001 Rmu_sc0006062.1_g000002 Rmu_sc0009780.1_g000005 Rmu_sc0013071.1_g000001 Rmu_sc0013071.1_g000012
rosa_roxburghii	Rroxscaffold_2G00095130 Rroxscaffold_2G00095140 Rroxscaffold_2G00095160 Rroxscaffold_2G00095180 Rroxscaffold_2G00095190 Rroxscaffold_2G00095200 Rroxscaffold_2G00131290 Rroxscaffold_2G00131320 Rroxscaffold_2G00131350
rosa_rugosa	Rorug02G0181500 Rorug02G0181500 Rorug02G0181600 Rorug02G0181700 Rorug02G0437300 Rorug02G0437400
rosa_samantha	Rh1DG154100 Rh2AG235200 Rh2AG235300 Rh2AG235400 Rh2AG235600 Rh2AG235800 Rh2AG499700 Rh2AG499800 Rh2AG500000 Rh2AG500100 Rh2AG500200 Rh2BG248500 Rh2BG248700 Rh2BG248800 Rh2BG511000 Rh2BG511200 Rh2BG511300 Rh2BG511600 Rh2CG239600 Rh2CG239700 Rh2CG239900 Rh2CG240000 Rh2CG485900 Rh2CG486000 Rh2CG486200 Rh2CG486300 Rh2CG486400 Rh2DG242500 Rh2DG242600 Rh2DG242700 Rh2DG242900 Rh2DG243100 Rh2DG522800 Rh2DG523100 Rh2DG523200 Rh2DG523500 Rh2DG523600 Rh5DG200200
rosa_wichuraiana	Rw2G018200 Rw2G018210 Rw2G018230 Rw2G018240 Rw2G041010 Rw2G041020 Rw2G041030 Rw2G041050

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AfiI	CCNNNNNNNGG	1 cut(s)	251
AgsI	TTSAA	1 cut(s)	206
AhlI	ACTAGT	1 cut(s)	248
AjuI	GAANNNNNNNTTGG	2 cut(s)	133, 165
AluBI	AGCT	3 cut(s)	46, 92, 226
AluI	AGCT	3 cut(s)	46, 92, 226
Alw21I	GWGCWC	1 cut(s)	268
Alw26I	GTCTC	1 cut(s)	89
Alw44I	GTGCAC	1 cut(s)	264
AlwNI	CAGNNNCTG	1 cut(s)	198
AoxI	GGCC	1 cut(s)	163
ApaLI	GTGCAC	1 cut(s)	264
BaeGI	GKGCMC	1 cut(s)	268
Bbv12I	GWGCWC	1 cut(s)	268
BccI	CCATC	1 cut(s)	106
BcoDI	GTCTC	1 cut(s)	89
BcuI	ACTAGT	1 cut(s)	248
BfaI	CTAG	2 cut(s)	249, 257
BlpI	GCTNAGC	1 cut(s)	42
BmsI	GCATC	1 cut(s)	204
Bpu1102I	GCTNAGC	1 cut(s)	42
Bsc4I	CCNNNNNNNGG	1 cut(s)	251
BseLI	CCNNNNNNNGG	1 cut(s)	251
BseMII	CTCAG	3 cut(s)	56, 84, 181
BseSI	GKGCMC	1 cut(s)	268
BshFI	GGCC	1 cut(s)	165
BsiHKAI	GWGCWC	1 cut(s)	268
BslI	CCNNNNNNNGG	1 cut(s)	251
BsmAI	GTCTC	1 cut(s)	89
BsnI	GGCC	1 cut(s)	165
Bsp1286I	GDGCHC	1 cut(s)	268
Bsp1720I	GCTNAGC	1 cut(s)	42
BspANI	GGCC	1 cut(s)	165
BspCNI	CTCAG	3 cut(s)	55, 85, 180
BspHI	TCATGA	1 cut(s)	284
Bst4CI	ACNGT	2 cut(s)	16, 263
Bst6I	CTCTTC	1 cut(s)	181
BstC8I	GCNNGC	1 cut(s)	119
BstDEI	CTNAG	3 cut(s)	42, 93, 167
BstMAI	GTCTC	1 cut(s)	89
BstSLI	GKGCMC	1 cut(s)	268
BsuRI	GGCC	1 cut(s)	165
BtsIMutI	CAGTG	2 cut(s)	175, 268
Cac8I	GCNNGC	1 cut(s)	119
CaiI	CAGNNNCTG	1 cut(s)	198
CciI	TCATGA	1 cut(s)	284
CviAII	CATG	4 cut(s)	64, 130, 280, 285
CviJI	RGCY	7 cut(s)	41, 46, 92, 117, 165, 226, 244
CviKI_1	RGCY	7 cut(s)	41, 46, 92, 117, 165, 226, 244
DdeI	CTNAG	3 cut(s)	42, 93, 167
Eam1104I	CTCTTC	1 cut(s)	181
EarI	CTCTTC	1 cut(s)	181
Eco147I	AGGCCT	1 cut(s)	165
FaeI	CATG	4 cut(s)	67, 133, 283, 288
FaiI	YATR	5 cut(s)	65, 131, 273, 281, 286
FatI	CATG	4 cut(s)	63, 129, 279, 284
FspBI	CTAG	2 cut(s)	249, 257
HaeIII	GGCC	1 cut(s)	165
Hin1II	CATG	4 cut(s)	67, 133, 283, 288
HindIII	AAGCTT	1 cut(s)	224
HinfI	GANTC	2 cut(s)	125, 189
Hpy166II	GTNNAC	2 cut(s)	254, 266
Hpy188III	TCNNGA	1 cut(s)	285
Hpy8I	GTNNAC	2 cut(s)	254, 266
HpyAV	CCTTC	1 cut(s)	76
HpyCH4III	ACNGT	2 cut(s)	16, 263
HpyCH4V	TGCA	2 cut(s)	121, 266
HpyF3I	CTNAG	3 cut(s)	42, 93, 167
Hsp92II	CATG	4 cut(s)	67, 133, 283, 288
LmnI	GCTCC	1 cut(s)	51
LweI	GCATC	1 cut(s)	204
MaeI	CTAG	2 cut(s)	249, 257
MboII	GAAGA	1 cut(s)	198
MhlI	GDGCHC	1 cut(s)	268
MluCI	AATT	1 cut(s)	141
MlyI	GAGTC	2 cut(s)	119, 198
MmeI	TCCRAC	2 cut(s)	73, 131
MnlI	CCTC	2 cut(s)	140, 176
MseI	TTAA	2 cut(s)	11, 212
NlaIII	CATG	4 cut(s)	67, 133, 283, 288
NmeAIII	GCCGAG	1 cut(s)	17
PagI	TCATGA	1 cut(s)	284
PceI	AGGCCT	1 cut(s)	165
PleI	GAGTC	2 cut(s)	119, 197
PpsI	GAGTC	2 cut(s)	119, 197
PstNI	CAGNNNCTG	1 cut(s)	198
SaqAI	TTAA	2 cut(s)	11, 212
SchI	GAGTC	2 cut(s)	119, 198
SduI	GDGCHC	1 cut(s)	268
SetI	ASST	5 cut(s)	48, 58, 94, 151, 228
SfaNI	GCATC	1 cut(s)	204
SpeI	ACTAGT	1 cut(s)	248
Sse9I	AATT	1 cut(s)	141
SseBI	AGGCCT	1 cut(s)	165
SspMI	CTAG	2 cut(s)	249, 257
StuI	AGGCCT	1 cut(s)	165
TaaI	ACNGT	2 cut(s)	16, 263
TasI	AATT	1 cut(s)	141
Tru1I	TTAA	2 cut(s)	11, 212
Tru9I	TTAA	2 cut(s)	11, 212
TscAI	CASTG	2 cut(s)	175, 268
TspDTI	ATGAA	1 cut(s)	146
TspRI	CASTG	2 cut(s)	175, 268
VneI	GTGCAC	1 cut(s)	264
XspI	CTAG	2 cut(s)	249, 257

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.