Rroxscaffold_2G00095140

ABC transporter G family member

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000002
Physical Location & Seq
Reverse (-)
16448454 .. 16450579
2126 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_2G00095140.1

Sequence Viewer

Length: 435 bp
ATGTCTAAGTCAAAGAAGAAAGAGAGAGCACAAGTGACCGCCATAAGAGAGATGGGTTTGCAAAATGCCATGAACACGAGGATTGGAGGTTGGGGAGCCAAGGGCCTCAGTGGTGGCGAAAAGAGAAGAGTTAGTATCTGCATTGAGCTTCTTACACAACCAAAACTTCTCTTTCTGGATGAACCAACAAGCGGACTTGACAGTGCTGCGTCTTTTTATGTGATGAGCAGAATTGCAAATCTTGGTCATAAATCGTCTCAGAGGACCATAGTTGCTTCCATCCATCAGCCTAGCTCTGAAGTCTTTCAACTCTTTGACAATCTTTGTCTTCTGTCTTCCGGCGAAACTGTATATTTTGGTCCTGCTTCTGCAGCGAATGAATTTTTCGCTGCAAGTGGTTTTCCATGTCCAACTCTCCTACATCCATCAGAATGA

Protein Analysis

144

Amino Acids

15.57

Weight (kDa)

8.88

Isoelectric Point (pI)

50.92

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
ABC_tran PF00005 11 - 64 4e-10 ABC transporter
ABC2_membrane_7 PF19055 95 - 142 1.4e-06 ABC-2 type transporter
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000287)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g20390 FvH4_1g20390 FvH4_1g20390 FvH4_1g20390 FvH4_1g20390 FvH4_1g20400 FvH4_1g20400 FvH4_1g20400 FvH4_1g20400 FvH4_1g20400 FvH4_1g20410 FvH4_1g20410 FvH4_6g39250 FvH4_6g39250
malus_domestica MD00G1036800.v1.1 MD05G1042600.v1.1 MD10G1049900.v1.1
prunus_persica Prupe.6G191500_v2.0.a1 Prupe.8G064300_v2.0.a1 Prupe.8G064300_v2.0.a1 Prupe.8G064400_v2.0.a1
pyrus_communis pycom05g03520 pycom10g03500 pycom10g03510 pycom15g28250
rosa_chinensis RchiOBHm_Chr1g0336561 RchiOBHm_Chr2g0112551 RchiOBHm_Chr2g0112561 RchiOBHm_Chr2g0112631 RchiOBHm_Chr2g0112641 RchiOBHm_Chr2g0153091 RchiOBHm_Chr2g0153111 RchiOBHm_Chr2g0153141 RchiOBHm_Chr2g0153161 RchiOBHm_Chr2g0153171
rosa_laevigata RLG00000017991 RLG00000017992 RLG00000017995 RLG00000017997 RLG00000020676 RLG00000020677 RLG00000020678 RLG00000020682
rosa_multiflora Rmu_co8208234.1_g000001 Rmu_co8218328.1_g000001 Rmu_co8425243.1_g000001 Rmu_sc0000218.1_g000037 Rmu_sc0000218.1_g000044 Rmu_sc0000218.1_g000047 Rmu_sc0000218.1_g000052 Rmu_sc0001155.1_g000011 Rmu_sc0001155.1_g000026 Rmu_sc0001155.1_g000029 Rmu_sc0001499.1_g000001 Rmu_sc0001499.1_g000040 Rmu_sc0002401.1_g000032 Rmu_sc0002401.1_g000033 Rmu_sc0004070.1_g000003 Rmu_sc0004070.1_g000004 Rmu_sc0005547.1_g000001 Rmu_sc0006062.1_g000002 Rmu_sc0009780.1_g000005 Rmu_sc0013071.1_g000001 Rmu_sc0013071.1_g000012
rosa_roxburghii Rroxscaffold_2G00095130 Rroxscaffold_2G00095140 Rroxscaffold_2G00095160 Rroxscaffold_2G00095180 Rroxscaffold_2G00095190 Rroxscaffold_2G00095200 Rroxscaffold_2G00131290 Rroxscaffold_2G00131320 Rroxscaffold_2G00131350
rosa_rugosa Rorug02G0181500 Rorug02G0181500 Rorug02G0181600 Rorug02G0181700 Rorug02G0437300 Rorug02G0437400
rosa_samantha Rh1DG154100 Rh2AG235200 Rh2AG235300 Rh2AG235400 Rh2AG235600 Rh2AG235800 Rh2AG499700 Rh2AG499800 Rh2AG500000 Rh2AG500100 Rh2AG500200 Rh2BG248500 Rh2BG248700 Rh2BG248800 Rh2BG511000 Rh2BG511200 Rh2BG511300 Rh2BG511600 Rh2CG239600 Rh2CG239700 Rh2CG239900 Rh2CG240000 Rh2CG485900 Rh2CG486000 Rh2CG486200 Rh2CG486300 Rh2CG486400 Rh2DG242500 Rh2DG242600 Rh2DG242700 Rh2DG242900 Rh2DG243100 Rh2DG522800 Rh2DG523100 Rh2DG523200 Rh2DG523500 Rh2DG523600 Rh5DG200200
rosa_wichuraiana Rw2G018200 Rw2G018210 Rw2G018230 Rw2G018240 Rw2G041010 Rw2G041020 Rw2G041030 Rw2G041050

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 39, 192
AcsI RAATTY 1 cut(s) 380
AcuI CTGAAG 1 cut(s) 318
AfiI CCNNNNNNNGG 1 cut(s) 191
AgsI TTSAA 1 cut(s) 308
AluBI AGCT 2 cut(s) 148, 294
AluI AGCT 2 cut(s) 148, 294
Alw21I GWGCWC 1 cut(s) 31
Alw26I GTCTC 1 cut(s) 261
AoxI GGCC 1 cut(s) 103
ApeKI GCWGC 3 cut(s) 206, 371, 389
ApoI RAATTY 1 cut(s) 380
Asp700I GAANNNNTTC 1 cut(s) 303
AspS9I GGNCC 3 cut(s) 103, 264, 359
AvaII GGWCC 2 cut(s) 264, 359
BauI CACGAG 1 cut(s) 76
BbsI GAAGAC 2 cut(s) 320, 327
Bbv12I GWGCWC 1 cut(s) 31
BbvI GCAGC 3 cut(s) 193, 376, 383
BccI CCATC 4 cut(s) 46, 287, 291, 433
BcoDI GTCTC 1 cut(s) 261
BfaI CTAG 1 cut(s) 291
BfmI CTRYAG 1 cut(s) 369
BisI GCNGC 3 cut(s) 207, 372, 390
BlsI GCNGC 3 cut(s) 208, 373, 391
Bme18I GGWCC 2 cut(s) 264, 359
BmgT120I GGNCC 3 cut(s) 103, 264, 359
BmiI GGNNCC 1 cut(s) 97
BpiI GAAGAC 2 cut(s) 320, 327
BsaJI CCNNGG 1 cut(s) 99
Bsc4I CCNNNNNNNGG 1 cut(s) 191
BseDI CCNNGG 1 cut(s) 99
BseGI GGATG 3 cut(s) 184, 279, 421
BseLI CCNNNNNNNGG 1 cut(s) 191
BseMII CTCAG 2 cut(s) 121, 272
BseXI GCAGC 3 cut(s) 193, 376, 383
BshFI GGCC 1 cut(s) 105
BsiHKAI GWGCWC 1 cut(s) 31
BsiSI CCGG 1 cut(s) 339
BslI CCNNNNNNNGG 1 cut(s) 191
BsmAI GTCTC 1 cut(s) 261
BsmBI CGTCTC 1 cut(s) 261
BsnI GGCC 1 cut(s) 105
Bsp1286I GDGCHC 1 cut(s) 31
BspACI CCGC 2 cut(s) 39, 192
BspANI GGCC 1 cut(s) 105
BspCNI CTCAG 2 cut(s) 120, 271
BspLI GGNNCC 1 cut(s) 97
BspMAI CTGCAG 1 cut(s) 373
BssECI CCNNGG 1 cut(s) 99
BssSI CACGAG 1 cut(s) 76
BssT1I CCWWGG 1 cut(s) 99
Bst2BI CACGAG 1 cut(s) 76
Bst4CI ACNGT 2 cut(s) 203, 349
Bst6I CTCTTC 1 cut(s) 121
BstDEI CTNAG 3 cut(s) 6, 107, 258
BstF5I GGATG 3 cut(s) 184, 279, 421
BstMAI GTCTC 1 cut(s) 261
BstMWI GCNNNNNNNGC 1 cut(s) 371
BstSFI CTRYAG 1 cut(s) 369
BstV1I GCAGC 3 cut(s) 193, 376, 383
BstV2I GAAGAC 2 cut(s) 320, 327
BsuRI GGCC 1 cut(s) 105
BtsCI GGATG 3 cut(s) 184, 279, 421
BtsIMutI CAGTG 2 cut(s) 115, 208
Cfr13I GGNCC 3 cut(s) 103, 264, 359
CseI GACGC 1 cut(s) 198
CviAII CATG 2 cut(s) 70, 405
CviJI RGCY 5 cut(s) 98, 105, 148, 289, 294
CviKI_1 RGCY 5 cut(s) 98, 105, 148, 289, 294
DdeI CTNAG 3 cut(s) 6, 107, 258
Eam1104I CTCTTC 1 cut(s) 121
EarI CTCTTC 1 cut(s) 121
Eco130I CCWWGG 1 cut(s) 99
Eco47I GGWCC 2 cut(s) 264, 359
Eco57I CTGAAG 1 cut(s) 318
EcoO109I RGGNCCY 1 cut(s) 103
EcoT14I CCWWGG 1 cut(s) 99
ErhI CCWWGG 1 cut(s) 99
Esp3I CGTCTC 1 cut(s) 261
FaeI CATG 2 cut(s) 73, 408
FaiI YATR 7 cut(s) 44, 71, 219, 249, 269, 352, 406
FatI CATG 2 cut(s) 69, 404
Fnu4HI GCNGC 3 cut(s) 207, 372, 390
FokI GGATG 3 cut(s) 191, 266, 408
Fsp4HI GCNGC 3 cut(s) 207, 372, 390
FspBI CTAG 1 cut(s) 291
GluI GCNGC 3 cut(s) 207, 372, 390
HaeIII GGCC 1 cut(s) 105
HapII CCGG 1 cut(s) 339
HgaI GACGC 1 cut(s) 198
Hin1II CATG 2 cut(s) 73, 408
HpaII CCGG 1 cut(s) 339
Hpy188I TCNGA 3 cut(s) 261, 298, 430
Hpy188III TCNNGA 1 cut(s) 176
HpyCH4III ACNGT 2 cut(s) 203, 349
HpyCH4V TGCA 5 cut(s) 61, 141, 236, 371, 392
HpyF10VI GCNNNNNNNGC 1 cut(s) 371
HpyF3I CTNAG 3 cut(s) 6, 107, 258
Hsp92II CATG 2 cut(s) 73, 408
LmnI GCTCC 1 cut(s) 95
LpnPI CCDG 3 cut(s) 161, 352, 375
Lsp1109I GCAGC 3 cut(s) 193, 376, 383
MaeI CTAG 1 cut(s) 291
MaeIII GTNAC 1 cut(s) 34
MboII GAAGA 4 cut(s) 28, 138, 320, 327
MhlI GDGCHC 1 cut(s) 31
MluCI AATT 2 cut(s) 231, 380
MmeI TCCRAC 1 cut(s) 434
MnlI CCTC 4 cut(s) 72, 80, 116, 255
MroXI GAANNNNTTC 1 cut(s) 303
MslI CAYNNNNRTG 1 cut(s) 430
MspI CCGG 1 cut(s) 339
MwoI GCNNNNNNNGC 1 cut(s) 371
NlaIII CATG 2 cut(s) 73, 408
NlaIV GGNNCC 1 cut(s) 97
NmuCI GTSAC 1 cut(s) 34
PdmI GAANNNNTTC 1 cut(s) 303
PkrI GCNGC 3 cut(s) 208, 373, 391
PspN4I GGNNCC 1 cut(s) 97
PspPI GGNCC 3 cut(s) 103, 264, 359
PstI CTGCAG 1 cut(s) 373
RseI CAYNNNNRTG 1 cut(s) 430
SatI GCNGC 3 cut(s) 207, 372, 390
Sau96I GGNCC 3 cut(s) 103, 264, 359
SduI GDGCHC 1 cut(s) 31
SetI ASST 3 cut(s) 91, 150, 296
SfcI CTRYAG 1 cut(s) 369
SinI GGWCC 2 cut(s) 264, 359
SmiMI CAYNNNNRTG 1 cut(s) 430
Sse9I AATT 2 cut(s) 231, 380
SsiI CCGC 2 cut(s) 39, 192
SspMI CTAG 1 cut(s) 291
StyI CCWWGG 1 cut(s) 99
TaaI ACNGT 2 cut(s) 203, 349
TasI AATT 2 cut(s) 231, 380
TscAI CASTG 2 cut(s) 115, 208
TseFI GTSAC 1 cut(s) 34
TseI GCWGC 3 cut(s) 206, 371, 389
Tsp45I GTSAC 1 cut(s) 34
TspDTI ATGAA 3 cut(s) 86, 195, 393
TspRI CASTG 2 cut(s) 115, 208
VpaK11BI GGWCC 2 cut(s) 264, 359
XapI RAATTY 1 cut(s) 380
XcmI CCANNNNNNNNNTGG 1 cut(s) 49
XmnI GAANNNNTTC 1 cut(s) 303
XspI CTAG 1 cut(s) 291
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.