Rh2AG235300

ABC transporter G family member

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2A
Physical Location & Seq
Forward (+)
25444375 .. 25456213
11839 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2AG235300.1

Sequence Viewer

Length: 702 bp
ATGGAGTCTTCTTCTCCAGCTAACTTTCCAAGATGGGCACCAAGTCCAAGCCCCTCGAGAGTATTACTATTACCTGTGGAAGACACCAAGATCAAGTCGAATGCTGCTCGTGATTCTGCAGAGAATGGCTTATCCTTATCATGTTCTAGCATGGAAAGGATTTTCCCATTTACCATTGGATTCAAAAGCACTGCTACTACTAGTACTGCTTATGCTTCTGCGGTTGAAAAGTTACTAGAAGCTGAATGTGCTTACGTTAAAAGCAGTGATCGGAAAAGGGAGCAGCGAATGATTTTGCAGAAGCTTACCGGGTTTGCTCAACCTGGTGAGGTTTTGGCTATTATGGGTCCTTCTGGCTGTGGAAAATCAACCCTTTTGGATGCTTTAGCAGGAAGGCTAAGTTCAAGCACACAGCACAGAGGGAAGATCCTAATCAATGGCCGGAAAGAAACACTTGCCTACGGAACCTCGGCATATGTGACTCAAGATGACACACTAATGACAACATTAACAGTAAGGGAAGTTGTGTATTACCCGGCGCAGCTCCAACTACCTAACACCATGTCAAAAGCAGAAAAGAAGGAAAGAGCTGAGACGACAATAAGGGAGATGGGCTTGCAAGACTCCATGAACACAAGAATTGGAGGTTGGAGTAAAAAGGGCCTCAGTGGTGGGCAAAAGAGGAGTCAGCATCTGCGTTGA

Protein Analysis

233

Amino Acids

25.43

Weight (kDa)

9.62

Isoelectric Point (pI)

50.07

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
RsgA_GTPase PF03193 82 - 151 7.8e-06 RsgA GTPase
ABC_tran PF00005 103 - 229 4.3e-19 ABC transporter
AAA_29 PF13555 109 - 137 8.9e-06 P-loop containing region of AAA domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000287)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g20390 FvH4_1g20390 FvH4_1g20390 FvH4_1g20390 FvH4_1g20390 FvH4_1g20400 FvH4_1g20400 FvH4_1g20400 FvH4_1g20400 FvH4_1g20400 FvH4_1g20410 FvH4_1g20410 FvH4_6g39250 FvH4_6g39250
malus_domestica MD00G1036800.v1.1 MD05G1042600.v1.1 MD10G1049900.v1.1
prunus_persica Prupe.6G191500_v2.0.a1 Prupe.8G064300_v2.0.a1 Prupe.8G064300_v2.0.a1 Prupe.8G064400_v2.0.a1
pyrus_communis pycom05g03520 pycom10g03500 pycom10g03510 pycom15g28250
rosa_chinensis RchiOBHm_Chr1g0336561 RchiOBHm_Chr2g0112551 RchiOBHm_Chr2g0112561 RchiOBHm_Chr2g0112631 RchiOBHm_Chr2g0112641 RchiOBHm_Chr2g0153091 RchiOBHm_Chr2g0153111 RchiOBHm_Chr2g0153141 RchiOBHm_Chr2g0153161 RchiOBHm_Chr2g0153171
rosa_laevigata RLG00000017991 RLG00000017992 RLG00000017995 RLG00000017997 RLG00000020676 RLG00000020677 RLG00000020678 RLG00000020682
rosa_multiflora Rmu_co8208234.1_g000001 Rmu_co8218328.1_g000001 Rmu_co8425243.1_g000001 Rmu_sc0000218.1_g000037 Rmu_sc0000218.1_g000044 Rmu_sc0000218.1_g000047 Rmu_sc0000218.1_g000052 Rmu_sc0001155.1_g000011 Rmu_sc0001155.1_g000026 Rmu_sc0001155.1_g000029 Rmu_sc0001499.1_g000001 Rmu_sc0001499.1_g000040 Rmu_sc0002401.1_g000032 Rmu_sc0002401.1_g000033 Rmu_sc0004070.1_g000003 Rmu_sc0004070.1_g000004 Rmu_sc0005547.1_g000001 Rmu_sc0006062.1_g000002 Rmu_sc0009780.1_g000005 Rmu_sc0013071.1_g000001 Rmu_sc0013071.1_g000012
rosa_roxburghii Rroxscaffold_2G00095130 Rroxscaffold_2G00095140 Rroxscaffold_2G00095160 Rroxscaffold_2G00095180 Rroxscaffold_2G00095190 Rroxscaffold_2G00095200 Rroxscaffold_2G00131290 Rroxscaffold_2G00131320 Rroxscaffold_2G00131350
rosa_rugosa Rorug02G0181500 Rorug02G0181500 Rorug02G0181600 Rorug02G0181700 Rorug02G0437300 Rorug02G0437400
rosa_samantha Rh1DG154100 Rh2AG235200 Rh2AG235300 Rh2AG235400 Rh2AG235600 Rh2AG235800 Rh2AG499700 Rh2AG499800 Rh2AG500000 Rh2AG500100 Rh2AG500200 Rh2BG248500 Rh2BG248700 Rh2BG248800 Rh2BG511000 Rh2BG511200 Rh2BG511300 Rh2BG511600 Rh2CG239600 Rh2CG239700 Rh2CG239900 Rh2CG240000 Rh2CG485900 Rh2CG486000 Rh2CG486200 Rh2CG486300 Rh2CG486400 Rh2DG242500 Rh2DG242600 Rh2DG242700 Rh2DG242900 Rh2DG243100 Rh2DG522800 Rh2DG523100 Rh2DG523200 Rh2DG523500 Rh2DG523600 Rh5DG200200
rosa_wichuraiana Rw2G018200 Rw2G018210 Rw2G018230 Rw2G018240 Rw2G041010 Rw2G041020 Rw2G041030 Rw2G041050

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 37
AciI CCGC 1 cut(s) 221
AclWI GGATC 1 cut(s) 421
AcoI YGGCCR 1 cut(s) 439
AfaI GTAC 1 cut(s) 205
AgsI TTSAA 3 cut(s) 184, 227, 405
AhlI ACTAGT 1 cut(s) 200
AjnI CCWGG 1 cut(s) 322
AjuI GAANNNNNNNTTGG 2 cut(s) 631, 663
AluBI AGCT 5 cut(s) 20, 242, 304, 544, 590
AluI AGCT 5 cut(s) 20, 242, 304, 544, 590
Alw26I GTCTC 1 cut(s) 587
AlwI GGATC 1 cut(s) 421
AlwNI CAGNNNCTG 1 cut(s) 694
Ama87I CYCGRG 1 cut(s) 55
AoxI GGCC 2 cut(s) 439, 661
ApeKI GCWGC 3 cut(s) 104, 283, 541
ArsI GACNNNNNNTTYG 2 cut(s) 670, 702
AspLEI GCGC 1 cut(s) 541
AspS9I GGNCC 2 cut(s) 347, 661
AsuC2I CCSGG 2 cut(s) 310, 536
AsuHPI GGTGA 1 cut(s) 338
AvaI CYCGRG 1 cut(s) 55
AvaII GGWCC 1 cut(s) 347
BaeGI GKGCMC 1 cut(s) 40
BanI GGYRCC 1 cut(s) 37
BauI CACGAG 1 cut(s) 108
BbsI GAAGAC 1 cut(s) 87
BbvI GCAGC 3 cut(s) 91, 295, 553
BccI CCATC 2 cut(s) 27, 604
BciT130I CCWGG 1 cut(s) 324
BcnI CCSGG 2 cut(s) 310, 536
BcoDI GTCTC 1 cut(s) 587
BcuI ACTAGT 1 cut(s) 200
BfaI CTAG 3 cut(s) 147, 201, 236
BfmI CTRYAG 1 cut(s) 117
BisI GCNGC 3 cut(s) 105, 284, 542
BlsI GCNGC 3 cut(s) 106, 285, 543
BmcAI AGTACT 1 cut(s) 205
Bme1390I CCNGG 3 cut(s) 310, 324, 536
Bme18I GGWCC 1 cut(s) 347
BmeT110I CYCGRG 1 cut(s) 55
BmgT120I GGNCC 2 cut(s) 347, 661
BmiI GGNNCC 3 cut(s) 39, 348, 466
BmrFI CCNGG 3 cut(s) 310, 324, 536
BmsI GCATC 1 cut(s) 370
BpiI GAAGAC 1 cut(s) 87
BpuEI CTTGAG 1 cut(s) 468
BpuMI CCSGG 2 cut(s) 310, 536
BsaBI GATNNNNATC 1 cut(s) 431
BsaJI CCNNGG 1 cut(s) 468
Bse8I GATNNNNATC 1 cut(s) 431
BseBI CCWGG 1 cut(s) 324
BseDI CCNNGG 1 cut(s) 468
BseGI GGATG 1 cut(s) 385
BseJI GATNNNNATC 1 cut(s) 431
BseMII CTCAG 2 cut(s) 582, 679
BseRI GAGGAG 1 cut(s) 697
BseSI GKGCMC 1 cut(s) 40
BseXI GCAGC 3 cut(s) 91, 295, 553
BshFI GGCC 2 cut(s) 441, 663
BshNI GGYRCC 1 cut(s) 37
BsiHKCI CYCGRG 1 cut(s) 55
BsiSI CCGG 3 cut(s) 309, 442, 536
BsmAI GTCTC 1 cut(s) 587
BsmBI CGTCTC 1 cut(s) 587
BsmI GAATGC 1 cut(s) 106
BsnI GGCC 2 cut(s) 441, 663
BsoBI CYCGRG 1 cut(s) 55
Bsp1286I GDGCHC 1 cut(s) 40
Bsp143I GATC 3 cut(s) 90, 268, 426
BspACI CCGC 1 cut(s) 221
BspANI GGCC 2 cut(s) 441, 663
BspCNI CTCAG 2 cut(s) 583, 678
BspLI GGNNCC 3 cut(s) 39, 348, 466
BspMAI CTGCAG 1 cut(s) 121
BspPI GGATC 1 cut(s) 421
BspT107I GGYRCC 1 cut(s) 37
BssECI CCNNGG 1 cut(s) 468
BssMI GATC 3 cut(s) 90, 268, 426
BssSI CACGAG 1 cut(s) 108
Bst2BI CACGAG 1 cut(s) 108
Bst2UI CCWGG 1 cut(s) 324
Bst4CI ACNGT 1 cut(s) 514
BstC8I GCNNGC 1 cut(s) 617
BstDEI CTNAG 3 cut(s) 398, 591, 665
BstF5I GGATG 1 cut(s) 385
BstHHI GCGC 1 cut(s) 541
BstKTI GATC 3 cut(s) 93, 271, 429
BstMAI GTCTC 1 cut(s) 587
BstMBI GATC 3 cut(s) 90, 268, 426
BstMWI GCNNNNNNNGC 1 cut(s) 248
BstNI CCWGG 1 cut(s) 324
BstSCI CCNGG 3 cut(s) 308, 322, 534
BstSFI CTRYAG 1 cut(s) 117
BstSLI GKGCMC 1 cut(s) 40
BstV1I GCAGC 3 cut(s) 91, 295, 553
BstV2I GAAGAC 1 cut(s) 87
BstX2I RGATCY 1 cut(s) 426
BstYI RGATCY 1 cut(s) 426
BsuRI GGCC 2 cut(s) 441, 663
BtsCI GGATG 1 cut(s) 385
BtsI GCAGTG 2 cut(s) 189, 271
BtsIMutI CAGTG 3 cut(s) 189, 271, 673
Cac8I GCNNGC 1 cut(s) 617
CaiI CAGNNNCTG 1 cut(s) 694
CfoI GCGC 1 cut(s) 541
Cfr13I GGNCC 2 cut(s) 347, 661
CsiI ACCWGGT 1 cut(s) 322
Csp6I GTAC 1 cut(s) 204
CviAII CATG 4 cut(s) 141, 151, 562, 628
CviQI GTAC 1 cut(s) 204
DdeI CTNAG 3 cut(s) 398, 591, 665
DpnI GATC 3 cut(s) 92, 270, 428
DpnII GATC 3 cut(s) 90, 268, 426
EaeI YGGCCR 1 cut(s) 439
Eco47I GGWCC 1 cut(s) 347
Eco88I CYCGRG 1 cut(s) 55
EcoO109I RGGNCCY 2 cut(s) 347, 661
EcoRII CCWGG 1 cut(s) 322
Esp3I CGTCTC 1 cut(s) 587
FaeI CATG 4 cut(s) 144, 154, 565, 631
FaiI YATR 8 cut(s) 142, 152, 213, 344, 475, 477, 563, 629
FalI AAGNNNNNCTT 2 cut(s) 438, 470
FatI CATG 4 cut(s) 140, 150, 561, 627
FauNDI CATATG 1 cut(s) 475
Fnu4HI GCNGC 3 cut(s) 105, 284, 542
FokI GGATG 1 cut(s) 392
Fsp4HI GCNGC 3 cut(s) 105, 284, 542
FspBI CTAG 3 cut(s) 147, 201, 236
GlaI GCGC 1 cut(s) 540
GluI GCNGC 3 cut(s) 105, 284, 542
HaeIII GGCC 2 cut(s) 441, 663
HapII CCGG 3 cut(s) 309, 442, 536
HhaI GCGC 1 cut(s) 541
Hin1II CATG 4 cut(s) 144, 154, 565, 631
Hin6I GCGC 1 cut(s) 539
HinP1I GCGC 1 cut(s) 539
HindIII AAGCTT 1 cut(s) 302
HinfI GANTC 6 cut(s) 5, 113, 180, 481, 623, 685
HpaII CCGG 3 cut(s) 309, 442, 536
HphI GGTGA 1 cut(s) 338
Hpy188I TCNGA 1 cut(s) 273
Hpy188III TCNNGA 3 cut(s) 57, 110, 485
HpyAV CCTTC 3 cut(s) 360, 387, 574
HpyCH4III ACNGT 1 cut(s) 514
HpyCH4IV ACGT 1 cut(s) 255
HpyCH4V TGCA 3 cut(s) 119, 298, 619
HpyF10VI GCNNNNNNNGC 1 cut(s) 248
HpyF3I CTNAG 3 cut(s) 398, 591, 665
HpySE526I ACGT 1 cut(s) 255
Hsp92II CATG 4 cut(s) 144, 154, 565, 631
HspAI GCGC 1 cut(s) 539
Kzo9I GATC 3 cut(s) 90, 268, 426
LmnI GCTCC 2 cut(s) 280, 549
LpnPI CCDG 9 cut(s) 30, 87, 309, 322, 336, 339, 375, 455, 549
Lsp1109I GCAGC 3 cut(s) 91, 295, 553
LweI GCATC 1 cut(s) 370
MabI ACCWGGT 1 cut(s) 322
MaeI CTAG 3 cut(s) 147, 201, 236
MaeII ACGT 1 cut(s) 255
MaeIII GTNAC 2 cut(s) 231, 478
MalI GATC 3 cut(s) 92, 270, 428
MboI GATC 3 cut(s) 90, 268, 426
MboII GAAGA 3 cut(s) 3, 92, 436
MflI RGATCY 1 cut(s) 426
MhlI GDGCHC 1 cut(s) 40
MluCI AATT 1 cut(s) 639
MlyI GAGTC 4 cut(s) 14, 475, 617, 694
MmeI TCCRAC 2 cut(s) 571, 629
MnlI CCTC 7 cut(s) 64, 322, 413, 478, 638, 674, 675
MseI TTAA 2 cut(s) 258, 509
MslI CAYNNNNRTG 1 cut(s) 497
MspI CCGG 3 cut(s) 309, 442, 536
MspR9I CCNGG 3 cut(s) 310, 324, 536
Mva1269I GAATGC 1 cut(s) 106
MvaI CCWGG 1 cut(s) 324
MwoI GCNNNNNNNGC 1 cut(s) 248
NciI CCSGG 2 cut(s) 310, 536
NdeI CATATG 1 cut(s) 475
NdeII GATC 3 cut(s) 90, 268, 426
NlaIII CATG 4 cut(s) 144, 154, 565, 631
NlaIV GGNNCC 3 cut(s) 39, 348, 466
NmeAIII GCCGAG 1 cut(s) 449
NmuCI GTSAC 1 cut(s) 478
PaeR7I CTCGAG 1 cut(s) 55
PctI GAATGC 1 cut(s) 106
PfeI GAWTC 2 cut(s) 113, 180
PkrI GCNGC 3 cut(s) 106, 285, 543
PleI GAGTC 4 cut(s) 13, 475, 617, 693
PpsI GAGTC 4 cut(s) 13, 475, 617, 693
PpuMI RGGWCCY 1 cut(s) 347
Psp5II RGGWCCY 1 cut(s) 347
Psp6I CCWGG 1 cut(s) 322
PspGI CCWGG 1 cut(s) 322
PspN4I GGNNCC 3 cut(s) 39, 348, 466
PspPI GGNCC 2 cut(s) 347, 661
PspPPI RGGWCCY 1 cut(s) 347
PstI CTGCAG 1 cut(s) 121
PstNI CAGNNNCTG 1 cut(s) 694
PsuI RGATCY 1 cut(s) 426
RsaI GTAC 1 cut(s) 205
RsaNI GTAC 1 cut(s) 204
RseI CAYNNNNRTG 1 cut(s) 497
SaqAI TTAA 2 cut(s) 258, 509
SatI GCNGC 3 cut(s) 105, 284, 542
Sau3AI GATC 3 cut(s) 90, 268, 426
Sau96I GGNCC 2 cut(s) 347, 661
ScaI AGTACT 1 cut(s) 205
SchI GAGTC 4 cut(s) 14, 475, 617, 694
ScrFI CCNGG 3 cut(s) 310, 324, 536
SduI GDGCHC 1 cut(s) 40
SexAI ACCWGGT 1 cut(s) 322
SfaNI GCATC 1 cut(s) 370
SfcI CTRYAG 1 cut(s) 117
Sfr274I CTCGAG 1 cut(s) 55
SinI GGWCC 1 cut(s) 347
SlaI CTCGAG 1 cut(s) 55
SmiMI CAYNNNNRTG 1 cut(s) 497
SmlI CTYRAG 2 cut(s) 55, 483
SmoI CTYRAG 2 cut(s) 55, 483
SpeI ACTAGT 1 cut(s) 200
Sse9I AATT 1 cut(s) 639
SsiI CCGC 1 cut(s) 221
SspMI CTAG 3 cut(s) 147, 201, 236
StyD4I CCNGG 3 cut(s) 308, 322, 534
TaaI ACNGT 1 cut(s) 514
TaiI ACGT 1 cut(s) 258
TaqI TCGA 2 cut(s) 56, 98
TasI AATT 1 cut(s) 639
TatI WGTACW 1 cut(s) 203
TfiI GAWTC 2 cut(s) 113, 180
Tru1I TTAA 2 cut(s) 258, 509
Tru9I TTAA 2 cut(s) 258, 509
TscAI CASTG 3 cut(s) 196, 271, 673
TseFI GTSAC 1 cut(s) 478
TseI GCWGC 3 cut(s) 104, 283, 541
Tsp45I GTSAC 1 cut(s) 478
TspDTI ATGAA 1 cut(s) 644
TspGWI ACGGA 1 cut(s) 477
TspRI CASTG 3 cut(s) 196, 271, 673
VpaK11BI GGWCC 1 cut(s) 347
XhoI CTCGAG 1 cut(s) 55
XspI CTAG 3 cut(s) 147, 201, 236
ZrmI AGTACT 1 cut(s) 205
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.