Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2D

Orthogroup ID

OG0000287

Physical Location & Seq

Genomic Coordinates Forward (+)

74892451 .. 74894141

Gene Structure 1691 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2DG523500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 585 bp

ATGTGCGTCTATCGAGCTCACTTAATTACGCACTGTCTAGCTCAGCTTATGGCTTCAATTACATCTCATTCTAATGTTAAGCTTATTAGTGCAATTCATGAAAGTGAAAATGGTTACCATCCTAGTAGTCCCACAGCAGTTGCGGAGGTTGAAACAGTTGCTAAAGGAGATGCCGCAGTGAAGGAAGACTCCATTCAAAACCGAAACCATATAAAGGTTCCACTAATCGAAAATGATGAGGGTCTTTTCTTGACATGGGAAGATTTGTGGGTGAGAGTAGCCTCAAATTTAAATGAGGGAGAAAAGCATAGTAGTGATGGAAGAAGCTGCAGATCAATCCTCCGAGGGGTAACTGGTTATGCCAAACCAGGGCAACTCTTGGCTATAATGGGTCCTTCTGGTTGTGGCAAATCTACTCTTCTTGATGCTTTAGCAGGTAATGATGTTTTGAAGCTGCGCATATATATGTATTTATGTATATCTATGATATGTACGTACATATATAGGGAGCCGATGTATGGTGCCATACATGAGAGTATCTGCTCTCCACTCCCTTTTGGTTGTTTAAAACAGTTACTTTTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0001101 GO:0003002 GO:0003006 GO:0003674 GO:0003824 GO:0005215 GO:0005319 GO:0005342 GO:0005488 GO:0005515 GO:0005575 GO:0005623 GO:0005886 GO:0006810 GO:0006811 GO:0006820 GO:0006869 GO:0006950 GO:0006970 GO:0007275 GO:0007389 GO:0008028 GO:0008150 GO:0008509 GO:0008514 GO:0009611 GO:0009628 GO:0009651 GO:0009653 GO:0009719 GO:0009725 GO:0009737 GO:0009790 GO:0009791 GO:0009793 GO:0009897 GO:0009965 GO:0009986 GO:0010016 GO:0010033 GO:0010051 GO:0010154 GO:0010222 GO:0010588 GO:0010876 GO:0015075 GO:0015245 GO:0015318 GO:0015399 GO:0015405 GO:0015711 GO:0015718 GO:0015849 GO:0015908 GO:0016020 GO:0016021 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0022414 GO:0022804 GO:0022857 GO:0031224 GO:0032501 GO:0032502 GO:0033036 GO:0033993 GO:0034220 GO:0042221 GO:0042623 GO:0042626 GO:0042802 GO:0042803 GO:0043492 GO:0044425 GO:0044459 GO:0044464 GO:0046942 GO:0046943 GO:0046983 GO:0048316 GO:0048366 GO:0048367 GO:0048598 GO:0048608 GO:0048731 GO:0048825 GO:0048826 GO:0048827 GO:0048856 GO:0050896 GO:0051179 GO:0051234 GO:0055085 GO:0061458 GO:0071702 GO:0071944 GO:0080051 GO:0090698 GO:0097305 GO:0098552 GO:0098656 GO:0099402 GO:1901700 GO:1903825 GO:1905039 GO:1905392

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

ABC2_membrane ABC_tran

Protein Analysis

194

Amino Acids

21.33

Weight (kDa)

6.43

Isoelectric Point (pI)

43.75

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ABC_tran	PF00005	114 - 147	8.4e-08	ABC transporter

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000287)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g20390 FvH4_1g20390 FvH4_1g20390 FvH4_1g20390 FvH4_1g20390 FvH4_1g20400 FvH4_1g20400 FvH4_1g20400 FvH4_1g20400 FvH4_1g20400 FvH4_1g20410 FvH4_1g20410 FvH4_6g39250 FvH4_6g39250
malus_domestica	MD00G1036800.v1.1 MD05G1042600.v1.1 MD10G1049900.v1.1
prunus_persica	Prupe.6G191500_v2.0.a1 Prupe.8G064300_v2.0.a1 Prupe.8G064300_v2.0.a1 Prupe.8G064400_v2.0.a1
pyrus_communis	pycom05g03520 pycom10g03500 pycom10g03510 pycom15g28250
rosa_chinensis	RchiOBHm_Chr1g0336561 RchiOBHm_Chr2g0112551 RchiOBHm_Chr2g0112561 RchiOBHm_Chr2g0112631 RchiOBHm_Chr2g0112641 RchiOBHm_Chr2g0153091 RchiOBHm_Chr2g0153111 RchiOBHm_Chr2g0153141 RchiOBHm_Chr2g0153161 RchiOBHm_Chr2g0153171
rosa_laevigata	RLG00000017991 RLG00000017992 RLG00000017995 RLG00000017997 RLG00000020676 RLG00000020677 RLG00000020678 RLG00000020682
rosa_multiflora	Rmu_co8208234.1_g000001 Rmu_co8218328.1_g000001 Rmu_co8425243.1_g000001 Rmu_sc0000218.1_g000037 Rmu_sc0000218.1_g000044 Rmu_sc0000218.1_g000047 Rmu_sc0000218.1_g000052 Rmu_sc0001155.1_g000011 Rmu_sc0001155.1_g000026 Rmu_sc0001155.1_g000029 Rmu_sc0001499.1_g000001 Rmu_sc0001499.1_g000040 Rmu_sc0002401.1_g000032 Rmu_sc0002401.1_g000033 Rmu_sc0004070.1_g000003 Rmu_sc0004070.1_g000004 Rmu_sc0005547.1_g000001 Rmu_sc0006062.1_g000002 Rmu_sc0009780.1_g000005 Rmu_sc0013071.1_g000001 Rmu_sc0013071.1_g000012
rosa_roxburghii	Rroxscaffold_2G00095130 Rroxscaffold_2G00095140 Rroxscaffold_2G00095160 Rroxscaffold_2G00095180 Rroxscaffold_2G00095190 Rroxscaffold_2G00095200 Rroxscaffold_2G00131290 Rroxscaffold_2G00131320 Rroxscaffold_2G00131350
rosa_rugosa	Rorug02G0181500 Rorug02G0181500 Rorug02G0181600 Rorug02G0181700 Rorug02G0437300 Rorug02G0437400
rosa_samantha	Rh1DG154100 Rh2AG235200 Rh2AG235300 Rh2AG235400 Rh2AG235600 Rh2AG235800 Rh2AG499700 Rh2AG499800 Rh2AG500000 Rh2AG500100 Rh2AG500200 Rh2BG248500 Rh2BG248700 Rh2BG248800 Rh2BG511000 Rh2BG511200 Rh2BG511300 Rh2BG511600 Rh2CG239600 Rh2CG239700 Rh2CG239900 Rh2CG240000 Rh2CG485900 Rh2CG486000 Rh2CG486200 Rh2CG486300 Rh2CG486400 Rh2DG242500 Rh2DG242600 Rh2DG242700 Rh2DG242900 Rh2DG243100 Rh2DG522800 Rh2DG523100 Rh2DG523200 Rh2DG523500 Rh2DG523600 Rh5DG200200
rosa_wichuraiana	Rw2G018200 Rw2G018210 Rw2G018230 Rw2G018240 Rw2G041010 Rw2G041020 Rw2G041030 Rw2G041050

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	458
Acc36I	ACCTGC	1 cut(s)	425
AccB1I	GGYRCC	1 cut(s)	521
AciI	CCGC	2 cut(s)	143, 174
AcsI	RAATTY	1 cut(s)	286
AfaI	GTAC	2 cut(s)	493, 497
AfiI	CCNNNNNNNGG	4 cut(s)	214, 346, 369, 518
AgsI	TTSAA	4 cut(s)	57, 152, 197, 451
AjnI	CCWGG	1 cut(s)	367
AluBI	AGCT	6 cut(s)	17, 41, 46, 82, 327, 454
AluI	AGCT	6 cut(s)	17, 41, 46, 82, 327, 454
Alw21I	GWGCWC	1 cut(s)	19
ApeKI	GCWGC	2 cut(s)	327, 454
ApoI	RAATTY	1 cut(s)	286
AspLEI	GCGC	1 cut(s)	459
AspS9I	GGNCC	1 cut(s)	392
AsuHPI	GGTGA	1 cut(s)	283
AvaII	GGWCC	1 cut(s)	392
BanI	GGYRCC	1 cut(s)	521
BanII	GRGCYC	1 cut(s)	19
BbsI	GAAGAC	1 cut(s)	192
Bbv12I	GWGCWC	1 cut(s)	19
BbvI	GCAGC	2 cut(s)	314, 441
BccI	CCATC	2 cut(s)	126, 311
BciT130I	CCWGG	1 cut(s)	369
BfaI	CTAG	2 cut(s)	38, 123
BfmI	CTRYAG	1 cut(s)	328
BfuAI	ACCTGC	1 cut(s)	425
BisI	GCNGC	3 cut(s)	174, 328, 455
BlpI	GCTNAGC	1 cut(s)	42
BlsI	GCNGC	3 cut(s)	175, 329, 456
Bme1390I	CCNGG	1 cut(s)	369
Bme18I	GGWCC	1 cut(s)	392
BmgT120I	GGNCC	1 cut(s)	392
BmiI	GGNNCC	4 cut(s)	219, 393, 510, 523
BmrFI	CCNGG	1 cut(s)	369
BmsI	GCATC	2 cut(s)	160, 415
BpiI	GAAGAC	1 cut(s)	192
Bpu1102I	GCTNAGC	1 cut(s)	42
BsaAI	YACGTR	1 cut(s)	495
BsaJI	CCNNGG	2 cut(s)	343, 368
BsaXI	ACNNNNNCTCC	2 cut(s)	500, 530
Bsc4I	CCNNNNNNNGG	4 cut(s)	214, 346, 369, 518
Bse1I	ACTGG	1 cut(s)	358
BseBI	CCWGG	1 cut(s)	369
BseDI	CCNNGG	2 cut(s)	343, 368
BseGI	GGATG	1 cut(s)	118
BseLI	CCNNNNNNNGG	4 cut(s)	214, 346, 369, 518
BseMII	CTCAG	1 cut(s)	56
BseNI	ACTGG	1 cut(s)	358
BseXI	GCAGC	2 cut(s)	314, 441
BshNI	GGYRCC	1 cut(s)	521
BsiHKAI	GWGCWC	1 cut(s)	19
BslFI	GGGAC	1 cut(s)	114
BslI	CCNNNNNNNGG	4 cut(s)	214, 346, 369, 518
BsmFI	GGGAC	1 cut(s)	114
Bsp1286I	GDGCHC	1 cut(s)	19
Bsp143I	GATC	1 cut(s)	332
Bsp1720I	GCTNAGC	1 cut(s)	42
BspACI	CCGC	2 cut(s)	143, 174
BspCNI	CTCAG	1 cut(s)	55
BspHI	TCATGA	1 cut(s)	97
BspLI	GGNNCC	4 cut(s)	219, 393, 510, 523
BspMAI	CTGCAG	1 cut(s)	332
BspMI	ACCTGC	1 cut(s)	425
BspT107I	GGYRCC	1 cut(s)	521
BsrI	ACTGG	1 cut(s)	358
BssECI	CCNNGG	2 cut(s)	343, 368
BssMI	GATC	1 cut(s)	332
Bst2UI	CCWGG	1 cut(s)	369
Bst4CI	ACNGT	3 cut(s)	35, 157, 573
Bst6I	CTCTTC	1 cut(s)	423
BstBAI	YACGTR	1 cut(s)	495
BstDEI	CTNAG	1 cut(s)	42
BstEII	GGTNACC	1 cut(s)	113
BstF5I	GGATG	1 cut(s)	118
BstHHI	GCGC	1 cut(s)	459
BstKTI	GATC	1 cut(s)	335
BstMBI	GATC	1 cut(s)	332
BstNI	CCWGG	1 cut(s)	369
BstPI	GGTNACC	1 cut(s)	113
BstSCI	CCNGG	1 cut(s)	367
BstSFI	CTRYAG	1 cut(s)	328
BstSNI	TACGTA	1 cut(s)	495
BstV1I	GCAGC	2 cut(s)	314, 441
BstV2I	GAAGAC	1 cut(s)	192
BtsCI	GGATG	1 cut(s)	118
BtsI	GCAGTG	1 cut(s)	183
BtsIMutI	CAGTG	2 cut(s)	31, 183
BveI	ACCTGC	1 cut(s)	425
CciI	TCATGA	1 cut(s)	97
CfoI	GCGC	1 cut(s)	459
Cfr13I	GGNCC	1 cut(s)	392
Csp6I	GTAC	2 cut(s)	492, 496
CspCI	CAANNNNNGTGG	2 cut(s)	121, 156
CviAII	CATG	3 cut(s)	98, 255, 530
CviQI	GTAC	2 cut(s)	492, 496
DdeI	CTNAG	1 cut(s)	42
DpnI	GATC	1 cut(s)	334
DpnII	GATC	1 cut(s)	332
DraI	TTTAAA	2 cut(s)	291, 567
Eam1104I	CTCTTC	1 cut(s)	423
EarI	CTCTTC	1 cut(s)	423
Ecl136II	GAGCTC	1 cut(s)	17
Eco105I	TACGTA	1 cut(s)	495
Eco24I	GRGCYC	1 cut(s)	19
Eco47I	GGWCC	1 cut(s)	392
Eco53kI	GAGCTC	1 cut(s)	17
Eco91I	GGTNACC	1 cut(s)	113
EcoICRI	GAGCTC	1 cut(s)	17
EcoO109I	RGGNCCY	1 cut(s)	392
EcoO65I	GGTNACC	1 cut(s)	113
EcoRII	CCWGG	1 cut(s)	367
EcoT38I	GRGCYC	1 cut(s)	19
FaeI	CATG	3 cut(s)	101, 258, 533
FaqI	GGGAC	1 cut(s)	114
FatI	CATG	3 cut(s)	97, 254, 529
Fnu4HI	GCNGC	3 cut(s)	174, 328, 455
FokI	GGATG	1 cut(s)	105
FriOI	GRGCYC	1 cut(s)	19
Fsp4HI	GCNGC	3 cut(s)	174, 328, 455
FspBI	CTAG	2 cut(s)	38, 123
FspI	TGCGCA	1 cut(s)	458
GlaI	GCGC	1 cut(s)	458
GluI	GCNGC	3 cut(s)	174, 328, 455
HhaI	GCGC	1 cut(s)	459
Hin1II	CATG	3 cut(s)	101, 258, 533
Hin6I	GCGC	1 cut(s)	457
HinP1I	GCGC	1 cut(s)	457
HindIII	AAGCTT	1 cut(s)	80
HinfI	GANTC	1 cut(s)	188
HphI	GGTGA	1 cut(s)	283
Hpy188I	TCNGA	1 cut(s)	344
Hpy188III	TCNNGA	3 cut(s)	98, 250, 422
HpyAV	CCTTC	2 cut(s)	175, 405
HpyCH4III	ACNGT	3 cut(s)	35, 157, 573
HpyCH4IV	ACGT	1 cut(s)	494
HpyCH4V	TGCA	2 cut(s)	92, 330
HpyF3I	CTNAG	1 cut(s)	42
HpySE526I	ACGT	1 cut(s)	494
Hsp92II	CATG	3 cut(s)	101, 258, 533
HspAI	GCGC	1 cut(s)	457
Kzo9I	GATC	1 cut(s)	332
LmnI	GCTCC	1 cut(s)	508
LpnPI	CCDG	5 cut(s)	339, 354, 381, 384, 420
Lsp1109I	GCAGC	2 cut(s)	314, 441
LweI	GCATC	2 cut(s)	160, 415
MaeI	CTAG	2 cut(s)	38, 123
MaeII	ACGT	1 cut(s)	494
MaeIII	GTNAC	3 cut(s)	113, 349, 573
MalI	GATC	1 cut(s)	334
MboI	GATC	1 cut(s)	332
MboII	GAAGA	4 cut(s)	197, 272, 333, 410
MhlI	GDGCHC	1 cut(s)	19
MluCI	AATT	4 cut(s)	24, 57, 93, 286
MlyI	GAGTC	1 cut(s)	182
MnlI	CCTC	6 cut(s)	139, 232, 289, 292, 338, 350
MseI	TTAA	4 cut(s)	23, 78, 290, 566
MslI	CAYNNNNRTG	4 cut(s)	72, 102, 312, 464
MspR9I	CCNGG	1 cut(s)	369
MvaI	CCWGG	1 cut(s)	369
NdeII	GATC	1 cut(s)	332
NlaIII	CATG	3 cut(s)	101, 258, 533
NlaIV	GGNNCC	4 cut(s)	219, 393, 510, 523
NsbI	TGCGCA	1 cut(s)	458
PagI	TCATGA	1 cut(s)	97
PkrI	GCNGC	3 cut(s)	175, 329, 456
PleI	GAGTC	1 cut(s)	182
PpsI	GAGTC	1 cut(s)	182
Ppu21I	YACGTR	1 cut(s)	495
PpuMI	RGGWCCY	1 cut(s)	392
Psp124BI	GAGCTC	1 cut(s)	19
Psp5II	RGGWCCY	1 cut(s)	392
Psp6I	CCWGG	1 cut(s)	367
PspEI	GGTNACC	1 cut(s)	113
PspGI	CCWGG	1 cut(s)	367
PspN4I	GGNNCC	4 cut(s)	219, 393, 510, 523
PspPI	GGNCC	1 cut(s)	392
PspPPI	RGGWCCY	1 cut(s)	392
PstI	CTGCAG	1 cut(s)	332
RsaI	GTAC	2 cut(s)	493, 497
RsaNI	GTAC	2 cut(s)	492, 496
RseI	CAYNNNNRTG	4 cut(s)	72, 102, 312, 464
SacI	GAGCTC	1 cut(s)	19
SaqAI	TTAA	4 cut(s)	23, 78, 290, 566
SatI	GCNGC	3 cut(s)	174, 328, 455
Sau3AI	GATC	1 cut(s)	332
Sau96I	GGNCC	1 cut(s)	392
SchI	GAGTC	1 cut(s)	182
ScrFI	CCNGG	1 cut(s)	369
SduI	GDGCHC	1 cut(s)	19
SfaNI	GCATC	2 cut(s)	160, 415
SfcI	CTRYAG	1 cut(s)	328
SinI	GGWCC	1 cut(s)	392
SmiI	ATTTAAAT	1 cut(s)	291
SmiMI	CAYNNNNRTG	4 cut(s)	72, 102, 312, 464
SnaBI	TACGTA	1 cut(s)	495
Sse9I	AATT	4 cut(s)	24, 57, 93, 286
SsiI	CCGC	2 cut(s)	143, 174
SspMI	CTAG	2 cut(s)	38, 123
SstI	GAGCTC	1 cut(s)	19
StyD4I	CCNGG	1 cut(s)	367
SwaI	ATTTAAAT	1 cut(s)	291
TaaI	ACNGT	3 cut(s)	35, 157, 573
TaiI	ACGT	1 cut(s)	497
TaqI	TCGA	2 cut(s)	13, 228
TasI	AATT	4 cut(s)	24, 57, 93, 286
TauI	GCSGC	1 cut(s)	176
Tru1I	TTAA	4 cut(s)	23, 78, 290, 566
Tru9I	TTAA	4 cut(s)	23, 78, 290, 566
TscAI	CASTG	2 cut(s)	38, 183
TseI	GCWGC	2 cut(s)	327, 454
TspDTI	ATGAA	2 cut(s)	86, 114
TspRI	CASTG	2 cut(s)	38, 183
VpaK11BI	GGWCC	1 cut(s)	392
XapI	RAATTY	1 cut(s)	286
XspI	CTAG	2 cut(s)	38, 123

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.