Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000002

Orthogroup ID

OG0000287

Physical Location & Seq

Genomic Coordinates Reverse (-)

16511863 .. 16541023

Gene Structure 29161 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_2G00095180.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2151 bp

ATGGCTTCAGTTAGATCTCATTCTAATGTTCAGCTTGTTGATTCAATTCATGAAAAAGAATATGGTTACCATCCCAGTAATCCCACGGCAGTTGTGGAGCCCGAAATAGTCGCTAGAGGAGATGCGGTAGTGATGGAAGATTCCATTCAAAACAGAAACCATATAAAGATTCCATTAATCGAAAATAATAAGGGTCTTTTCTTGACATGGGAAGATTTGTGGGTGAGAGTACCTTCAAATTTAAATGAGAGAAAGAATAGTAGTGATGGAAGAAGCTGCAGATCAATCCTCCGAGGGGTAACTGGTTATGCCAAACCAGGGCAGCTTTTGGCTATAATGGGTCCTTCTGGTTGTGGCAAATCTACTCTTCTTGATGCTTTAGCAGGTAGATTGAGTTCAAGCACAAGGCAAACTGGGGATATCCGTATAAATGGACATAAACAAGCACTAGCTTATGGAACTTCGGCATATGTGACACAAGATGACACTCTAATGAAGACATTAACGGTGAAAGAAGCTATATACTACTCAGCTCAACTGCAGTTACCGAATTCAATGTCTAAGTCGATGAAGAAAGAGAGAGCACAAGTGACCATAAGAGAGATGGGTTTGCAAAATGCCATGGACACGAGGATCGGAGGTTGGGGAGCCAAGGGCCTCAGTGGTGGCGAGAAGAGAAGAGTCAGCATCTGCATTGAGCTACTTACACAACCAAAACTTCTCTTTTTGGATGAACCCACAAGCGGACTTGATAGCGCTGCGTCTTTTTATGTGATGAGCAGAATTGCAAATCTTGGTCGTAAATCGTCTCAGAGGACTATAGTTTCTTCCATCCATCAGCCTAGCTCTGAAGTCTTTCAACTTTTTGACAATCTTTGTCTTCTGTCTTCCGGTGAAACTGTATATTTTGGTCCTGCTTCTGCAGCGAATGAATTTTTCGCTGCAAGTGGTTTTCCATGCCCAACTCTCCTGTATCCATCAGATCACTTCCTCAAGACCATAAACAAAGATTTTGAGCTGGACGTTGAGCAAGGTATAGCCGGAAGAACACCCACTGAGGGAGCTCTTCATACTCTAAAGCAGTCATTTAAAACATCTGAAAGTTATCACCAACTCCAAAGACAAATAGCTGAAATATTCAAGAAGGATTGTGAAGCATTAGAAAAGAGAAGCCCTAGATCCTTTGTGAATGCTGGCTTTGTCACACAATGTCTTGTACTTACAAGAAGATCCTCTGTGAACATGTACCGAGATCGAGGCTACTACTGGTTGCGCCTTTTCATCTACATAGCCCTAGCTGCCGGCCTCGGCACTATCTATTATAATCTTGGATACACTTATGCATCAATTCAGGCACGAGGCTCTCTACTAGCATTTGTGGCTTCATTTCTAACTTTCATGGCCATTGGTGGGTTTCCTTCTTTTGTGGAAGACATGAAGGTATTTGAACGTGAAAGACTGAATGGGCACTATGGTGTTAGTGCATTCGTCTTCGCCAACACATTTTCTTCAATGCCTTTGTTGATGTTGATTTCATTGATTCCTGGAGCAATAACCTACTATCTTGCTGGACTTCACGGTGGATTTGAACACTTCTTCTACTTTGCCTCTGCACTATATGCTTGCATGATGCTGGTTGAGAGCCTAATGATGATAGTTGCGAGCATCGTGCCGAATTTCCTTATGGGCATAATAGTTGGTTCTGGATTGCAAGGGATTATGTTGTTATGCGGCGGATTCTTCCGGCTACCAAATGATCTTCCGGATCTCGTGTGGAAATACCCATTGTACCATATTGCCTTCCACAAGTATGCATTCCAGGGAATGTTTAAGAATGAATTTGAAGGAACAACGTTTCCGAATGATGATCAACTTAGAATCGGTAACTCTAAGTGGCTTAGTGGCGACAGCATTTTGAGAGATATATGGCAGGTGGAAATGGGTTACTCTAAATGGGTTGATCTTGGTGTCTTGCTAGGAATGATAGTTCTGTATCGAGCTTTGTTCTTAGTTATCATCAAGATCACTGAGAAAAGGAAGACTATTACCTTAGCTCTTCTGTCCGTGGCTCCGAAGCAAAGCATGCAAGTATTGGTGAATCCTCCTCTACTCCATTGCATGGAGAGAGCCGGTAGAATGGTAACATGGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0001101 GO:0003002 GO:0003006 GO:0003674 GO:0003824 GO:0005215 GO:0005319 GO:0005342 GO:0005488 GO:0005515 GO:0005575 GO:0005623 GO:0005886 GO:0006810 GO:0006811 GO:0006820 GO:0006869 GO:0006950 GO:0006970 GO:0007275 GO:0007389 GO:0008028 GO:0008150 GO:0008509 GO:0008514 GO:0009611 GO:0009628 GO:0009651 GO:0009653 GO:0009719 GO:0009725 GO:0009737 GO:0009790 GO:0009791 GO:0009793 GO:0009897 GO:0009965 GO:0009986 GO:0010016 GO:0010033 GO:0010051 GO:0010154 GO:0010222 GO:0010588 GO:0010876 GO:0015075 GO:0015245 GO:0015318 GO:0015399 GO:0015405 GO:0015711 GO:0015718 GO:0015849 GO:0015908 GO:0016020 GO:0016021 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0022414 GO:0022804 GO:0022857 GO:0031224 GO:0032501 GO:0032502 GO:0033036 GO:0033993 GO:0034220 GO:0042221 GO:0042623 GO:0042626 GO:0042802 GO:0042803 GO:0043492 GO:0044425 GO:0044459 GO:0044464 GO:0046942 GO:0046943 GO:0046983 GO:0048316 GO:0048366 GO:0048367 GO:0048598 GO:0048608 GO:0048731 GO:0048825 GO:0048826 GO:0048827 GO:0048856 GO:0050896 GO:0051179 GO:0051234 GO:0055085 GO:0061458 GO:0071702 GO:0071944 GO:0080051 GO:0090698 GO:0097305 GO:0098552 GO:0098656 GO:0099402 GO:1901700 GO:1903825 GO:1905039 GO:1905392

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

ABC2_membrane ABC_tran

Protein Analysis

716

Amino Acids

79.85

Weight (kDa)

8.96

Isoelectric Point (pI)

41.17

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ABC_tran	PF00005	98 - 248	4.7e-28	ABC transporter
ABC2_membrane_7	PF19055	279 - 334	2.7e-08	ABC-2 type transporter
ABC2_membrane	PF01061	402 - 614	1.6e-41	ABC-2 type transporter

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0000287)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g20390 FvH4_1g20390 FvH4_1g20390 FvH4_1g20390 FvH4_1g20390 FvH4_1g20400 FvH4_1g20400 FvH4_1g20400 FvH4_1g20400 FvH4_1g20400 FvH4_1g20410 FvH4_1g20410 FvH4_6g39250 FvH4_6g39250
malus_domestica	MD00G1036800.v1.1 MD05G1042600.v1.1 MD10G1049900.v1.1
prunus_persica	Prupe.6G191500_v2.0.a1 Prupe.8G064300_v2.0.a1 Prupe.8G064300_v2.0.a1 Prupe.8G064400_v2.0.a1
pyrus_communis	pycom05g03520 pycom10g03500 pycom10g03510 pycom15g28250
rosa_chinensis	RchiOBHm_Chr1g0336561 RchiOBHm_Chr2g0112551 RchiOBHm_Chr2g0112561 RchiOBHm_Chr2g0112631 RchiOBHm_Chr2g0112641 RchiOBHm_Chr2g0153091 RchiOBHm_Chr2g0153111 RchiOBHm_Chr2g0153141 RchiOBHm_Chr2g0153161 RchiOBHm_Chr2g0153171
rosa_laevigata	RLG00000017991 RLG00000017992 RLG00000017995 RLG00000017997 RLG00000020676 RLG00000020677 RLG00000020678 RLG00000020682
rosa_multiflora	Rmu_co8208234.1_g000001 Rmu_co8218328.1_g000001 Rmu_co8425243.1_g000001 Rmu_sc0000218.1_g000037 Rmu_sc0000218.1_g000044 Rmu_sc0000218.1_g000047 Rmu_sc0000218.1_g000052 Rmu_sc0001155.1_g000011 Rmu_sc0001155.1_g000026 Rmu_sc0001155.1_g000029 Rmu_sc0001499.1_g000001 Rmu_sc0001499.1_g000040 Rmu_sc0002401.1_g000032 Rmu_sc0002401.1_g000033 Rmu_sc0004070.1_g000003 Rmu_sc0004070.1_g000004 Rmu_sc0005547.1_g000001 Rmu_sc0006062.1_g000002 Rmu_sc0009780.1_g000005 Rmu_sc0013071.1_g000001 Rmu_sc0013071.1_g000012
rosa_roxburghii	Rroxscaffold_2G00095130 Rroxscaffold_2G00095140 Rroxscaffold_2G00095160 Rroxscaffold_2G00095180 Rroxscaffold_2G00095190 Rroxscaffold_2G00095200 Rroxscaffold_2G00131290 Rroxscaffold_2G00131320 Rroxscaffold_2G00131350
rosa_rugosa	Rorug02G0181500 Rorug02G0181500 Rorug02G0181600 Rorug02G0181700 Rorug02G0437300 Rorug02G0437400
rosa_samantha	Rh1DG154100 Rh2AG235200 Rh2AG235300 Rh2AG235400 Rh2AG235600 Rh2AG235800 Rh2AG499700 Rh2AG499800 Rh2AG500000 Rh2AG500100 Rh2AG500200 Rh2BG248500 Rh2BG248700 Rh2BG248800 Rh2BG511000 Rh2BG511200 Rh2BG511300 Rh2BG511600 Rh2CG239600 Rh2CG239700 Rh2CG239900 Rh2CG240000 Rh2CG485900 Rh2CG486000 Rh2CG486200 Rh2CG486300 Rh2CG486400 Rh2DG242500 Rh2DG242600 Rh2DG242700 Rh2DG242900 Rh2DG243100 Rh2DG522800 Rh2DG523100 Rh2DG523200 Rh2DG523500 Rh2DG523600 Rh5DG200200
rosa_wichuraiana	Rw2G018200 Rw2G018210 Rw2G018230 Rw2G018240 Rw2G041010 Rw2G041020 Rw2G041030 Rw2G041050

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	1323
AarI	CACCTGC	1 cut(s)	1921
Acc36I	ACCTGC	2 cut(s)	374, 1921
AccB7I	CCANNNNNTGG	1 cut(s)	2119
AccIII	TCCGGA	1 cut(s)	1762
AciI	CCGC	4 cut(s)	125, 744, 1731, 1734
AclI	AACGTT	1 cut(s)	1853
AclWI	GGATC	4 cut(s)	641, 1173, 1224, 1773
AcoI	YGGCCR	1 cut(s)	1401
AcsI	RAATTY	5 cut(s)	238, 550, 932, 1675, 1838
AcuI	CTGAAG	1 cut(s)	870
AfaI	GTAC	4 cut(s)	231, 1218, 1247, 1790
AfeI	AGCGCT	1 cut(s)	757
AfiI	CCNNNNNNNGG	6 cut(s)	295, 318, 743, 1058, 1410, 2119
AflIII	ACRYGT	1 cut(s)	1242
AjnI	CCWGG	3 cut(s)	316, 1543, 1818
AleI	CACNNNNGTG	1 cut(s)	1473
AloI	GAACNNNNNNTCC	4 cut(s)	1840, 1872, 1971, 2003
Alw21I	GWGCWC	2 cut(s)	586, 1066
Alw26I	GTCTC	1 cut(s)	813
AlwI	GGATC	4 cut(s)	641, 1173, 1224, 1773
AlwNI	CAGNNNCTG	1 cut(s)	690
Aor13HI	TCCGGA	1 cut(s)	1762
Aor51HI	AGCGCT	1 cut(s)	757
AoxI	GGCC	3 cut(s)	655, 1303, 1401
ApeKI	GCWGC	6 cut(s)	276, 322, 758, 923, 941, 1298
ApoI	RAATTY	5 cut(s)	238, 550, 932, 1675, 1838
ArsI	GACNNNNNNTTYG	2 cut(s)	542, 574
AseI	ATTAAT	1 cut(s)	176
Asp700I	GAANNNNTTC	1 cut(s)	855
AspLEI	GCGC	2 cut(s)	758, 1275
AspS9I	GGNCC	3 cut(s)	341, 655, 911
AsuHPI	GGTGA	5 cut(s)	235, 520, 905, 1100, 2107
AvaII	GGWCC	2 cut(s)	341, 911
BaeGI	GKGCMC	1 cut(s)	1470
BalI	TGGCCA	1 cut(s)	1403
BanII	GRGCYC	2 cut(s)	102, 1066
BauI	CACGAG	3 cut(s)	628, 1356, 1769
BbsI	GAAGAC	6 cut(s)	503, 872, 879, 1437, 1483, 2045
Bbv12I	GWGCWC	2 cut(s)	586, 1066
BbvI	GCAGC	6 cut(s)	263, 334, 745, 928, 935, 1285
BccI	CCATC	7 cut(s)	78, 127, 260, 598, 839, 843, 985
BceAI	ACGGC	1 cut(s)	102
BcgI	CGANNNNNNTGC	2 cut(s)	1651, 1685
BciT130I	CCWGG	3 cut(s)	318, 1545, 1820
BciVI	GTATCC	2 cut(s)	984, 1325
BclI	TGATCA	1 cut(s)	1867
BcoDI	GTCTC	1 cut(s)	813
BfaI	CTAG	7 cut(s)	114, 449, 843, 1176, 1295, 1370, 1976
BfmI	CTRYAG	4 cut(s)	277, 539, 819, 921
BfoI	RGCGCY	1 cut(s)	759
BfuAI	ACCTGC	2 cut(s)	374, 1921
BfuI	GTATCC	2 cut(s)	984, 1325
BglII	AGATCT	1 cut(s)	14
BisI	GCNGC	7 cut(s)	277, 323, 759, 924, 942, 1299, 1732
BlsI	GCNGC	7 cut(s)	278, 324, 760, 925, 943, 1300, 1733
Bme1390I	CCNGG	3 cut(s)	318, 1545, 1820
Bme18I	GGWCC	2 cut(s)	341, 911
BmgT120I	GGNCC	3 cut(s)	341, 655, 911
BmiI	GGNNCC	4 cut(s)	99, 342, 649, 2070
BmrFI	CCNGG	3 cut(s)	318, 1545, 1820
BmrI	ACTGGG	2 cut(s)	69, 423
BmsI	GCATC	6 cut(s)	112, 364, 696, 1352, 1620, 1674
BmuI	ACTGGG	2 cut(s)	69, 423
BpiI	GAAGAC	6 cut(s)	503, 872, 879, 1437, 1483, 2045
BpmI	CTGGAG	1 cut(s)	1566
Bpu10I	CCTNAGC	1 cut(s)	2050
BpuEI	CTTGAG	1 cut(s)	977
BsaJI	CCNNGG	8 cut(s)	84, 292, 317, 621, 651, 1306, 1819, 2064
BsaWI	WCCGGW	2 cut(s)	890, 1762
BsaXI	ACNNNNNCTCC	2 cut(s)	111, 141
Bsc4I	CCNNNNNNNGG	6 cut(s)	295, 318, 743, 1058, 1410, 2119
Bse118I	RCCGGY	2 cut(s)	1301, 2129
Bse1I	ACTGG	4 cut(s)	75, 307, 418, 1271
Bse3DI	GCAATG	1 cut(s)	2113
BseAI	TCCGGA	1 cut(s)	1762
BseBI	CCWGG	3 cut(s)	318, 1545, 1820
BseDI	CCNNGG	8 cut(s)	84, 292, 317, 621, 651, 1306, 1819, 2064
BseGI	GGATG	3 cut(s)	70, 736, 831
BseLI	CCNNNNNNNGG	6 cut(s)	295, 318, 743, 1058, 1410, 2119
BseMI	GCAATG	1 cut(s)	2113
BseMII	CTCAG	5 cut(s)	543, 673, 824, 1047, 2019
BseNI	ACTGG	4 cut(s)	75, 307, 418, 1271
BseRI	GAGGAG	2 cut(s)	132, 2094
BseSI	GKGCMC	1 cut(s)	1470
BseXI	GCAGC	6 cut(s)	263, 334, 745, 928, 935, 1285
BsgI	GTGCAG	1 cut(s)	1596
BshFI	GGCC	3 cut(s)	657, 1305, 1403
BsiHKAI	GWGCWC	2 cut(s)	586, 1066
BsiSI	CCGG	6 cut(s)	891, 1041, 1302, 1744, 1763, 2130
BslI	CCNNNNNNNGG	6 cut(s)	295, 318, 743, 1058, 1410, 2119
BsmAI	GTCTC	1 cut(s)	813
BsmBI	CGTCTC	1 cut(s)	813
BsmI	GAATGC	3 cut(s)	1195, 1484, 1814
BsnI	GGCC	3 cut(s)	657, 1305, 1403
Bsp1286I	GDGCHC	4 cut(s)	102, 586, 1066, 1470
Bsp13I	TCCGGA	1 cut(s)	1762
Bsp19I	CCATGG	1 cut(s)	621
BspACI	CCGC	4 cut(s)	125, 744, 1731, 1734
BspANI	GGCC	3 cut(s)	657, 1305, 1403
BspCNI	CTCAG	5 cut(s)	542, 672, 823, 1048, 2020
BspEI	TCCGGA	1 cut(s)	1762
BspHI	TCATGA	1 cut(s)	49
BspLI	GGNNCC	4 cut(s)	99, 342, 649, 2070
BspMAI	CTGCAG	3 cut(s)	281, 543, 925
BspMI	ACCTGC	2 cut(s)	374, 1921
BspPI	GGATC	4 cut(s)	641, 1173, 1224, 1773
BspQI	GCTCTTC	2 cut(s)	1071, 2061
BsrDI	GCAATG	1 cut(s)	2113
BsrFI	RCCGGY	2 cut(s)	1301, 2129
BsrI	ACTGG	4 cut(s)	75, 307, 418, 1271
BssAI	RCCGGY	2 cut(s)	1301, 2129
BssECI	CCNNGG	8 cut(s)	84, 292, 317, 621, 651, 1306, 1819, 2064
BssSI	CACGAG	3 cut(s)	628, 1356, 1769
BssT1I	CCWWGG	2 cut(s)	621, 651
Bst2BI	CACGAG	3 cut(s)	628, 1356, 1769
Bst2UI	CCWGG	3 cut(s)	318, 1545, 1820
Bst4CI	ACNGT	3 cut(s)	508, 901, 1580
Bst6I	CTCTTC	5 cut(s)	372, 668, 673, 1071, 2061
BstAPI	GCANNNNNTGC	2 cut(s)	1619, 2083
BstC8I	GCNNGC	5 cut(s)	1195, 1303, 1624, 1663, 2084
BstDSI	CCRYGG	3 cut(s)	84, 621, 2064
BstEII	GGTNACC	1 cut(s)	65
BstF5I	GGATG	3 cut(s)	70, 736, 831
BstH2I	RGCGCY	1 cut(s)	759
BstHHI	GCGC	2 cut(s)	758, 1275
BstMAI	GTCTC	1 cut(s)	813
BstMWI	GCNNNNNNNGC	5 cut(s)	923, 1298, 1379, 1619, 2083
BstNI	CCWGG	3 cut(s)	318, 1545, 1820
BstNSI	RCATGY	2 cut(s)	1246, 2086
BstPI	GGTNACC	1 cut(s)	65
BstSCI	CCNGG	3 cut(s)	316, 1543, 1818
BstSFI	CTRYAG	4 cut(s)	277, 539, 819, 921
BstSLI	GKGCMC	1 cut(s)	1470
BstV1I	GCAGC	6 cut(s)	263, 334, 745, 928, 935, 1285
BstV2I	GAAGAC	6 cut(s)	503, 872, 879, 1437, 1483, 2045
BstX2I	RGATCY	4 cut(s)	14, 1178, 1229, 1765
BstYI	RGATCY	4 cut(s)	14, 1178, 1229, 1765
BsuI	GTATCC	2 cut(s)	984, 1325
BsuRI	GGCC	3 cut(s)	657, 1305, 1403
BtgI	CCRYGG	3 cut(s)	84, 621, 2064
BtsCI	GGATG	3 cut(s)	70, 736, 831
BtsIMutI	CAGTG	3 cut(s)	667, 1053, 2025
BveI	ACCTGC	2 cut(s)	374, 1921
Cac8I	GCNNGC	5 cut(s)	1195, 1303, 1624, 1663, 2084
CaiI	CAGNNNCTG	1 cut(s)	690
CciI	TCATGA	1 cut(s)	49
CfoI	GCGC	2 cut(s)	758, 1275
Cfr10I	RCCGGY	2 cut(s)	1301, 2129
Cfr13I	GGNCC	3 cut(s)	341, 655, 911
CseI	GACGC	1 cut(s)	750
Csp6I	GTAC	4 cut(s)	230, 1217, 1246, 1789
CspCI	CAANNNNNGTGG	2 cut(s)	73, 108
CviQI	GTAC	4 cut(s)	230, 1217, 1246, 1789
DraI	TTTAAA	2 cut(s)	243, 1090
EaeI	YGGCCR	1 cut(s)	1401
Eam1104I	CTCTTC	5 cut(s)	372, 668, 673, 1071, 2061
EarI	CTCTTC	5 cut(s)	372, 668, 673, 1071, 2061
EciI	GGCGGA	1 cut(s)	1749
Ecl136II	GAGCTC	1 cut(s)	1064
Eco130I	CCWWGG	2 cut(s)	621, 651
Eco24I	GRGCYC	2 cut(s)	102, 1066
Eco32I	GATATC	1 cut(s)	421
Eco47I	GGWCC	2 cut(s)	341, 911
Eco47III	AGCGCT	1 cut(s)	757
Eco53kI	GAGCTC	1 cut(s)	1064
Eco57I	CTGAAG	1 cut(s)	870
Eco91I	GGTNACC	1 cut(s)	65
EcoICRI	GAGCTC	1 cut(s)	1064
EcoO109I	RGGNCCY	2 cut(s)	341, 655
EcoO65I	GGTNACC	1 cut(s)	65
EcoRI	GAATTC	1 cut(s)	550
EcoRII	CCWGG	3 cut(s)	316, 1543, 1818
EcoRV	GATATC	1 cut(s)	421
EcoT14I	CCWWGG	2 cut(s)	621, 651
EcoT22I	ATGCAT	2 cut(s)	1345, 1816
EcoT38I	GRGCYC	2 cut(s)	102, 1066
ErhI	CCWWGG	2 cut(s)	621, 651
Esp3I	CGTCTC	1 cut(s)	813
FauNDI	CATATG	1 cut(s)	469
FbaI	TGATCA	1 cut(s)	1867
Fnu4HI	GCNGC	7 cut(s)	277, 323, 759, 924, 942, 1299, 1732
FokI	GGATG	3 cut(s)	57, 743, 818
FriOI	GRGCYC	2 cut(s)	102, 1066
Fsp4HI	GCNGC	7 cut(s)	277, 323, 759, 924, 942, 1299, 1732
FspBI	CTAG	7 cut(s)	114, 449, 843, 1176, 1295, 1370, 1976
GlaI	GCGC	2 cut(s)	757, 1274
GluI	GCNGC	7 cut(s)	277, 323, 759, 924, 942, 1299, 1732
GsuI	CTGGAG	1 cut(s)	1566
HaeII	RGCGCY	1 cut(s)	759
HaeIII	GGCC	3 cut(s)	657, 1305, 1403
HapII	CCGG	6 cut(s)	891, 1041, 1302, 1744, 1763, 2130
HgaI	GACGC	1 cut(s)	750
HhaI	GCGC	2 cut(s)	758, 1275
Hin6I	GCGC	2 cut(s)	756, 1273
HinP1I	GCGC	2 cut(s)	756, 1273
HinfI	GANTC	8 cut(s)	41, 140, 169, 681, 1540, 1737, 1878, 2098
HpaII	CCGG	6 cut(s)	891, 1041, 1302, 1744, 1763, 2130
HphI	GGTGA	5 cut(s)	235, 520, 905, 1100, 2107
Hpy166II	GTNNAC	1 cut(s)	1240
Hpy188I	TCNGA	8 cut(s)	293, 638, 813, 850, 982, 1099, 1860, 2073
Hpy188III	TCNNGA	8 cut(s)	50, 202, 371, 994, 1141, 1704, 1763, 2020
Hpy8I	GTNNAC	1 cut(s)	1240
HpyAV	CCTTC	7 cut(s)	243, 354, 1138, 1428, 1432, 1810, 1838
HpyCH4III	ACNGT	3 cut(s)	508, 901, 1580
HpyCH4IV	ACGT	3 cut(s)	1023, 1450, 1853
HpyF10VI	GCNNNNNNNGC	5 cut(s)	923, 1298, 1379, 1619, 2083
HpySE526I	ACGT	3 cut(s)	1023, 1450, 1853
HspAI	GCGC	2 cut(s)	756, 1273
Kpn2I	TCCGGA	1 cut(s)	1762
KroI	GCCGGC	1 cut(s)	1301
KroNI	GCCGGC	1 cut(s)	1303
Ksp22I	TGATCA	1 cut(s)	1867
LguI	GCTCTTC	2 cut(s)	1071, 2061
LmnI	GCTCC	5 cut(s)	97, 647, 1061, 1547, 2074
Lsp1109I	GCAGC	6 cut(s)	263, 334, 745, 928, 935, 1285
LweI	GCATC	6 cut(s)	112, 364, 696, 1352, 1620, 1674
MaeI	CTAG	7 cut(s)	114, 449, 843, 1176, 1295, 1370, 1976
MaeII	ACGT	3 cut(s)	1023, 1450, 1853
MaeIII	GTNAC	9 cut(s)	65, 298, 472, 543, 589, 1201, 1883, 1943, 2140
MflI	RGATCY	4 cut(s)	14, 1178, 1229, 1765
MhlI	GDGCHC	4 cut(s)	102, 586, 1066, 1470
MlsI	TGGCCA	1 cut(s)	1403
MluCI	AATT	8 cut(s)	45, 238, 550, 783, 932, 1347, 1675, 1838
MluNI	TGGCCA	1 cut(s)	1403
MlyI	GAGTC	1 cut(s)	690
Mox20I	TGGCCA	1 cut(s)	1403
Mph1103I	ATGCAT	2 cut(s)	1345, 1816
MroI	TCCGGA	1 cut(s)	1762
MroNI	GCCGGC	1 cut(s)	1301
MroXI	GAANNNNTTC	1 cut(s)	855
MscI	TGGCCA	1 cut(s)	1403
MseI	TTAA	5 cut(s)	176, 242, 503, 1089, 1830
MslI	CAYNNNNRTG	4 cut(s)	24, 491, 1473, 1809
Msp20I	TGGCCA	1 cut(s)	1403
MspI	CCGG	6 cut(s)	891, 1041, 1302, 1744, 1763, 2130
MspR9I	CCNGG	3 cut(s)	318, 1545, 1820
Mva1269I	GAATGC	3 cut(s)	1195, 1484, 1814
MvaI	CCWGG	3 cut(s)	318, 1545, 1820
MwoI	GCNNNNNNNGC	5 cut(s)	923, 1298, 1379, 1619, 2083
NaeI	GCCGGC	1 cut(s)	1303
NcoI	CCATGG	1 cut(s)	621
NdeI	CATATG	1 cut(s)	469
NgoMIV	GCCGGC	1 cut(s)	1301
NlaIV	GGNNCC	4 cut(s)	99, 342, 649, 2070
NmeAIII	GCCGAG	1 cut(s)	1287
NmuCI	GTSAC	3 cut(s)	472, 589, 1201
NsiI	ATGCAT	2 cut(s)	1345, 1816
NspI	RCATGY	2 cut(s)	1246, 2086
OliI	CACNNNNGTG	1 cut(s)	1473
PaeI	GCATGC	1 cut(s)	2086
PagI	TCATGA	1 cut(s)	49
PaqCI	CACCTGC	1 cut(s)	1921
PciI	ACATGT	1 cut(s)	1242
PciSI	GCTCTTC	2 cut(s)	1071, 2061
PctI	GAATGC	3 cut(s)	1195, 1484, 1814
PdiI	GCCGGC	1 cut(s)	1303
PdmI	GAANNNNTTC	1 cut(s)	855
PfeI	GAWTC	7 cut(s)	41, 140, 169, 1540, 1737, 1878, 2098
PflMI	CCANNNNNTGG	1 cut(s)	2119
PfoI	TCCNGGA	1 cut(s)	1543
PkrI	GCNGC	7 cut(s)	278, 324, 760, 925, 943, 1300, 1733
PleI	GAGTC	1 cut(s)	689
PpsI	GAGTC	1 cut(s)	689
PpuMI	RGGWCCY	1 cut(s)	341
PscI	ACATGT	1 cut(s)	1242
PshBI	ATTAAT	1 cut(s)	176
PsiI	TTATAA	1 cut(s)	1323
Psp124BI	GAGCTC	1 cut(s)	1066
Psp1406I	AACGTT	1 cut(s)	1853
Psp5II	RGGWCCY	1 cut(s)	341
Psp6I	CCWGG	3 cut(s)	316, 1543, 1818
PspEI	GGTNACC	1 cut(s)	65
PspGI	CCWGG	3 cut(s)	316, 1543, 1818
PspN4I	GGNNCC	4 cut(s)	99, 342, 649, 2070
PspPI	GGNCC	3 cut(s)	341, 655, 911
PspPPI	RGGWCCY	1 cut(s)	341
PsrI	GAACNNNNNNTAC	2 cut(s)	379, 411
PstI	CTGCAG	3 cut(s)	281, 543, 925
PstNI	CAGNNNCTG	1 cut(s)	690
PsuI	RGATCY	4 cut(s)	14, 1178, 1229, 1765
RsaI	GTAC	4 cut(s)	231, 1218, 1247, 1790
RsaNI	GTAC	4 cut(s)	230, 1217, 1246, 1789
RseI	CAYNNNNRTG	4 cut(s)	24, 491, 1473, 1809
SacI	GAGCTC	1 cut(s)	1066
SapI	GCTCTTC	2 cut(s)	1071, 2061
SaqAI	TTAA	5 cut(s)	176, 242, 503, 1089, 1830
SatI	GCNGC	7 cut(s)	277, 323, 759, 924, 942, 1299, 1732
Sau96I	GGNCC	3 cut(s)	341, 655, 911
SchI	GAGTC	1 cut(s)	690
ScrFI	CCNGG	3 cut(s)	318, 1545, 1820
SduI	GDGCHC	4 cut(s)	102, 586, 1066, 1470
SfaNI	GCATC	6 cut(s)	112, 364, 696, 1352, 1620, 1674
SfcI	CTRYAG	4 cut(s)	277, 539, 819, 921
SinI	GGWCC	2 cut(s)	341, 911
SmiI	ATTTAAAT	1 cut(s)	243
SmiMI	CAYNNNNRTG	4 cut(s)	24, 491, 1473, 1809
SmlI	CTYRAG	1 cut(s)	992
SmoI	CTYRAG	1 cut(s)	992
SphI	GCATGC	1 cut(s)	2086
Sse9I	AATT	8 cut(s)	45, 238, 550, 783, 932, 1347, 1675, 1838
SsiI	CCGC	4 cut(s)	125, 744, 1731, 1734
SspI	AATATT	1 cut(s)	1137
SspMI	CTAG	7 cut(s)	114, 449, 843, 1176, 1295, 1370, 1976
SstI	GAGCTC	1 cut(s)	1066
StyD4I	CCNGG	3 cut(s)	316, 1543, 1818
StyI	CCWWGG	2 cut(s)	621, 651
SwaI	ATTTAAAT	1 cut(s)	243
TaaI	ACNGT	3 cut(s)	508, 901, 1580
TaiI	ACGT	3 cut(s)	1026, 1453, 1856
TaqI	TCGA	4 cut(s)	180, 566, 1255, 1996
TasI	AATT	8 cut(s)	45, 238, 550, 783, 932, 1347, 1675, 1838
TatI	WGTACW	1 cut(s)	1216
TauI	GCSGC	1 cut(s)	1734
TfiI	GAWTC	7 cut(s)	41, 140, 169, 1540, 1737, 1878, 2098
Tru1I	TTAA	5 cut(s)	176, 242, 503, 1089, 1830
Tru9I	TTAA	5 cut(s)	176, 242, 503, 1089, 1830
TscAI	CASTG	3 cut(s)	667, 1060, 2032
TseFI	GTSAC	3 cut(s)	472, 589, 1201
TseI	GCWGC	6 cut(s)	276, 322, 758, 923, 941, 1298
Tsp45I	GTSAC	3 cut(s)	472, 589, 1201
TspGWI	ACGGA	2 cut(s)	413, 2053
TspRI	CASTG	3 cut(s)	667, 1060, 2032
Van91I	CCANNNNNTGG	1 cut(s)	2119
VpaK11BI	GGWCC	2 cut(s)	341, 911
VspI	ATTAAT	1 cut(s)	176
XapI	RAATTY	5 cut(s)	238, 550, 932, 1675, 1838
XceI	RCATGY	2 cut(s)	1246, 2086
XcmI	CCANNNNNNNNNTGG	2 cut(s)	91, 601
XmnI	GAANNNNTTC	1 cut(s)	855
XspI	CTAG	7 cut(s)	114, 449, 843, 1176, 1295, 1370, 1976
Zsp2I	ATGCAT	2 cut(s)	1345, 1816

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.