Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000002

Orthogroup ID

OG0000287

Physical Location & Seq

Genomic Coordinates Reverse (-)

16573131 .. 16576852

Gene Structure 3722 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_2G00095190.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1938 bp

ATGGCTTCTGGTAGATTCCATTCAAATGTCCGACACATCGATGCTACGTTCGAAAATGAATATGGTTACCACACCAGTAATCCCACAGGATTACTGGAGATTGAAACAGTTGCTAGAGGAGCTTCCTTCCTGGAGATTGAAACAGTTGATGGAGGAGCTTCATTCAGAAACCAAAACCGAAACCATGTAGTTCCATTAACTGTAGGTGATGAGGGTGTTTCCTTGACATGGAAAGATTTGTGGGTGAGAGTAGAAGGAAGAAGCTGTAGATCAATCCTCCAAGGGCTAACTGGTTATGCCAAACCAGGGCAACTCTTGGCTATAATGGGTCCTTCTGGTTGTGGCAAGTCTACTCTTCTTGATGCTTTGGCAGGGAGACTCAGTTCAAACACAAGGCAAACAGGGGAGATCCTAATCAATGGACATAAACAAGCACTGGCTTATGGAACTTCTGCATATGTGACACAAGATGATACTCTAATCACAACATTAACAGTCGAAGAAGCCGTATATTACTCAGCTCAGCTGCAATTACCAGACTCCATGTCCAAGTCGGAAAAGAAAGAGAGAGCACAAATAACGATAAGAGAGATGGGTTTGCAAGATGCCATGAACACGAGGATCGGAGGTTGGGGAGCCAAAGGCCTCAGTGGAGGCCAAAAGAGAAGAGTCAGCATTTGCATTGAGCTTCTTACGCGACCAAAGCTTCTCTTCTTGGACGAGCCAACAAGCGGGCTTGACAGCGCTGCGTCTTATTATGTGATGAGCCGAATTGCAAATCTTGGTTGTCATAAATCCTCGCAGAGGACTATTGTTGCTTCCATCCATCAGCCTAGCTCTGAAGTCTTTCAACTCTTTGACAATCTTTGTCTTCTGTCTTCGGGTAGAACTGTGTATTTCGGTCCTGCTTCTGCAGCCAATGAGGACATTGAGAAAGGCATAGCTGGAACCACACCCGCAGAGGAAGCCATTGATACTCTAATAAAGTCTTACAAATCATCTGAAAATTCTCACCAACTTCAAATACATGTAGCTGAACTACAGAAGAAGAATTGTGAAGCATTAGAAAGGAGAAGCCATGCTGGCTTTCTTACACAATCTTTGGTGCTTACAAGAAGATCGTTCGTGAACATGTACAGAGATCGAGGCTACTACTGGTTGCGCCTTGTTATCTACACCGGCATAGCTGTAGGCTTAGGCGTCATCTATCATGATCTAGGACATACTTATGCATCGATCCAGGTATTTGAACGCGAGAGACTAAACGGGCACTATGGTGTTAGTGCATTTGTTTTCGGCAACACATTTTCCTCGGTCCCTTTCTTGATGTTAATTTCAGTGATTCCTGGAGCAACAGCATATTACCTTGCCGGACTTCACAGTGGATTCGAACACTTCTTCTACTTTGCTTCTGCACTATTTGCTTGCATAATGCTGGTTGAGAGCCTAATGATGATAATTGCGAGCATCGTGCCAAACTACCTGATGGGCATAATAGCTGGTGCTGGAATCCAAGGTGTAATGATTTTATGCGGTGGATTCTTCCAGCTGCCAAATGATCTCCCGGATGTTTTGTTCAAGTACCCATTATATCACATTGCTTTCCACAAGTATGCATTCCAGGGAATGTTTAAGAATGAATTTTCACAAACAAGATTTCTAAACGACAATCTTCTCGGAATGGGTTCTAAATGGCTCAGTGGTGAACGCATTTTGAAAGAAAAATGGCAGATGGAAATGGGTTACTCCAAATGGGTTAATCTTGCTATCTTGTTAGGAATGGTAGTTCTGTATCGAATTTTGTTCTTCGTTATCCTCAAGACCACTGAGAAAGTGAAGACTATTACCTCGGCTCTTCTGTCCGTGGCTCCCAAGCGAAGCATGCAAGTGCTGGTGAATCCCTCCTCTACTCCACTGCATGGAGAGTGTTCGAAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0001101 GO:0003002 GO:0003006 GO:0003674 GO:0003824 GO:0005215 GO:0005319 GO:0005342 GO:0005488 GO:0005515 GO:0005575 GO:0005623 GO:0005886 GO:0006810 GO:0006811 GO:0006820 GO:0006869 GO:0006950 GO:0006970 GO:0007275 GO:0007389 GO:0008028 GO:0008150 GO:0008509 GO:0008514 GO:0009611 GO:0009628 GO:0009651 GO:0009653 GO:0009719 GO:0009725 GO:0009737 GO:0009790 GO:0009791 GO:0009793 GO:0009897 GO:0009965 GO:0009986 GO:0010016 GO:0010033 GO:0010051 GO:0010154 GO:0010222 GO:0010588 GO:0010876 GO:0015075 GO:0015245 GO:0015318 GO:0015399 GO:0015405 GO:0015711 GO:0015718 GO:0015849 GO:0015908 GO:0016020 GO:0016021 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0022414 GO:0022804 GO:0022857 GO:0031224 GO:0032501 GO:0032502 GO:0033036 GO:0033993 GO:0034220 GO:0042221 GO:0042623 GO:0042626 GO:0042802 GO:0042803 GO:0043492 GO:0044425 GO:0044459 GO:0044464 GO:0046942 GO:0046943 GO:0046983 GO:0048316 GO:0048366 GO:0048367 GO:0048598 GO:0048608 GO:0048731 GO:0048825 GO:0048826 GO:0048827 GO:0048856 GO:0050896 GO:0051179 GO:0051234 GO:0055085 GO:0061458 GO:0071702 GO:0071944 GO:0080051 GO:0090698 GO:0097305 GO:0098552 GO:0098656 GO:0099402 GO:1901700 GO:1903825 GO:1905039 GO:1905392

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

ABC2_membrane ABC_tran

Protein Analysis

645

Amino Acids

71.37

Weight (kDa)

8.64

Isoelectric Point (pI)

41.73

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ABC_tran	PF00005	93 - 244	1.2e-28	ABC transporter
ABC2_membrane	PF01061	413 - 548	1.7e-23	ABC-2 type transporter

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0000287)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g20390 FvH4_1g20390 FvH4_1g20390 FvH4_1g20390 FvH4_1g20390 FvH4_1g20400 FvH4_1g20400 FvH4_1g20400 FvH4_1g20400 FvH4_1g20400 FvH4_1g20410 FvH4_1g20410 FvH4_6g39250 FvH4_6g39250
malus_domestica	MD00G1036800.v1.1 MD05G1042600.v1.1 MD10G1049900.v1.1
prunus_persica	Prupe.6G191500_v2.0.a1 Prupe.8G064300_v2.0.a1 Prupe.8G064300_v2.0.a1 Prupe.8G064400_v2.0.a1
pyrus_communis	pycom05g03520 pycom10g03500 pycom10g03510 pycom15g28250
rosa_chinensis	RchiOBHm_Chr1g0336561 RchiOBHm_Chr2g0112551 RchiOBHm_Chr2g0112561 RchiOBHm_Chr2g0112631 RchiOBHm_Chr2g0112641 RchiOBHm_Chr2g0153091 RchiOBHm_Chr2g0153111 RchiOBHm_Chr2g0153141 RchiOBHm_Chr2g0153161 RchiOBHm_Chr2g0153171
rosa_laevigata	RLG00000017991 RLG00000017992 RLG00000017995 RLG00000017997 RLG00000020676 RLG00000020677 RLG00000020678 RLG00000020682
rosa_multiflora	Rmu_co8208234.1_g000001 Rmu_co8218328.1_g000001 Rmu_co8425243.1_g000001 Rmu_sc0000218.1_g000037 Rmu_sc0000218.1_g000044 Rmu_sc0000218.1_g000047 Rmu_sc0000218.1_g000052 Rmu_sc0001155.1_g000011 Rmu_sc0001155.1_g000026 Rmu_sc0001155.1_g000029 Rmu_sc0001499.1_g000001 Rmu_sc0001499.1_g000040 Rmu_sc0002401.1_g000032 Rmu_sc0002401.1_g000033 Rmu_sc0004070.1_g000003 Rmu_sc0004070.1_g000004 Rmu_sc0005547.1_g000001 Rmu_sc0006062.1_g000002 Rmu_sc0009780.1_g000005 Rmu_sc0013071.1_g000001 Rmu_sc0013071.1_g000012
rosa_roxburghii	Rroxscaffold_2G00095130 Rroxscaffold_2G00095140 Rroxscaffold_2G00095160 Rroxscaffold_2G00095180 Rroxscaffold_2G00095190 Rroxscaffold_2G00095200 Rroxscaffold_2G00131290 Rroxscaffold_2G00131320 Rroxscaffold_2G00131350
rosa_rugosa	Rorug02G0181500 Rorug02G0181500 Rorug02G0181600 Rorug02G0181700 Rorug02G0437300 Rorug02G0437400
rosa_samantha	Rh1DG154100 Rh2AG235200 Rh2AG235300 Rh2AG235400 Rh2AG235600 Rh2AG235800 Rh2AG499700 Rh2AG499800 Rh2AG500000 Rh2AG500100 Rh2AG500200 Rh2BG248500 Rh2BG248700 Rh2BG248800 Rh2BG511000 Rh2BG511200 Rh2BG511300 Rh2BG511600 Rh2CG239600 Rh2CG239700 Rh2CG239900 Rh2CG240000 Rh2CG485900 Rh2CG486000 Rh2CG486200 Rh2CG486300 Rh2CG486400 Rh2DG242500 Rh2DG242600 Rh2DG242700 Rh2DG242900 Rh2DG243100 Rh2DG522800 Rh2DG523100 Rh2DG523200 Rh2DG523500 Rh2DG523600 Rh5DG200200
rosa_wichuraiana	Rw2G018200 Rw2G018210 Rw2G018230 Rw2G018240 Rw2G041010 Rw2G041020 Rw2G041030 Rw2G041050

Restriction Enzyme Sites

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Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	1919
AccI	GTMKAC	1 cut(s)	350
AccII	CGCG	2 cut(s)	697, 1254
AciI	CCGC	3 cut(s)	732, 957, 1533
AclWI	GGATC	3 cut(s)	403, 629, 1231
AcsI	RAATTY	3 cut(s)	1006, 1640, 1797
AcuI	CTGAAG	1 cut(s)	861
AcyI	GRCGYC	1 cut(s)	1200
AfaI	GTAC	2 cut(s)	1136, 1583
AfeI	AGCGCT	1 cut(s)	745
AfiI	CCNNNNNNNGG	5 cut(s)	228, 306, 731, 804, 1919
AflIII	ACRYGT	2 cut(s)	1027, 1131
AgsI	TTSAA	9 cut(s)	24, 104, 140, 387, 851, 1022, 1250, 1579, 1717
AhdI	GACNNNNNGTC	1 cut(s)	544
AjnI	CCWGG	5 cut(s)	129, 304, 1239, 1345, 1620
AleI	CACNNNNGTG	1 cut(s)	1275
AloI	GAACNNNNNNTCC	6 cut(s)	367, 399, 1559, 1591, 1770, 1802
Alw21I	GWGCWC	1 cut(s)	574
Alw26I	GTCTC	2 cut(s)	370, 1252
AlwI	GGATC	3 cut(s)	403, 629, 1231
Aor51HI	AGCGCT	1 cut(s)	745
AoxI	GGCC	2 cut(s)	643, 655
ApeKI	GCWGC	4 cut(s)	526, 746, 914, 1549
ApoI	RAATTY	3 cut(s)	1006, 1640, 1797
Asp700I	GAANNNNTTC	2 cut(s)	846, 1684
AspLEI	GCGC	2 cut(s)	746, 1164
AspS9I	GGNCC	3 cut(s)	329, 902, 1315
AsuC2I	CCSGG	1 cut(s)	1565
AsuHPI	GGTGA	5 cut(s)	218, 256, 1004, 1715, 1906
AsuII	TTCGAA	3 cut(s)	51, 1389, 1931
AvaII	GGWCC	3 cut(s)	329, 902, 1315
BaeGI	GKGCMC	1 cut(s)	1272
BauI	CACGAG	1 cut(s)	616
BbsI	GAAGAC	3 cut(s)	863, 870, 1844
Bbv12I	GWGCWC	1 cut(s)	574
BbvI	GCAGC	4 cut(s)	513, 733, 926, 1536
BccI	CCATC	6 cut(s)	143, 586, 830, 834, 1480, 1726
BceAI	ACGGC	1 cut(s)	491
BcgI	CGANNNNNNTGC	2 cut(s)	1453, 1487
BciT130I	CCWGG	5 cut(s)	131, 306, 1241, 1347, 1622
BcnI	CCSGG	1 cut(s)	1565
BcoDI	GTCTC	2 cut(s)	370, 1252
BfaI	CTAG	3 cut(s)	114, 834, 1217
BfmI	CTRYAG	5 cut(s)	201, 265, 912, 1040, 1188
BfoI	RGCGCY	1 cut(s)	747
BglI	GCCNNNNNGGC	1 cut(s)	1083
BisI	GCNGC	4 cut(s)	527, 747, 915, 1550
BlpI	GCTNAGC	1 cut(s)	522
BlsI	GCNGC	4 cut(s)	528, 748, 916, 1551
Bme1390I	CCNGG	6 cut(s)	131, 306, 1241, 1347, 1565, 1622
Bme18I	GGWCC	3 cut(s)	329, 902, 1315
BmeRI	GACNNNNNGTC	1 cut(s)	544
BmgT120I	GGNCC	3 cut(s)	329, 902, 1315
BmiI	GGNNCC	5 cut(s)	330, 637, 949, 1317, 1869
BmrFI	CCNGG	6 cut(s)	131, 306, 1241, 1347, 1565, 1622
BmsI	GCATC	5 cut(s)	31, 352, 595, 1241, 1476
BpiI	GAAGAC	3 cut(s)	863, 870, 1844
BpmI	CTGGAG	3 cut(s)	116, 152, 1368
Bpu10I	CCTNAGC	1 cut(s)	1195
Bpu1102I	GCTNAGC	1 cut(s)	522
Bpu14I	TTCGAA	3 cut(s)	51, 1389, 1931
BpuEI	CTTGAG	1 cut(s)	1802
BpuMI	CCSGG	1 cut(s)	1565
Bsa29I	ATCGAT	2 cut(s)	39, 1235
BsaBI	GATNNNNATC	1 cut(s)	413
BsaHI	GRCGYC	1 cut(s)	1200
BsaJI	CCNNGG	7 cut(s)	280, 305, 1311, 1513, 1621, 1848, 1863
BsaXI	ACNNNNNCTCC	2 cut(s)	367, 397
Bsc4I	CCNNNNNNNGG	5 cut(s)	228, 306, 731, 804, 1919
Bse118I	RCCGGY	1 cut(s)	1178
Bse1I	ACTGG	5 cut(s)	75, 99, 295, 441, 1160
Bse3DI	GCAATG	1 cut(s)	1596
Bse8I	GATNNNNATC	1 cut(s)	413
BseBI	CCWGG	5 cut(s)	131, 306, 1241, 1347, 1622
BseCI	ATCGAT	2 cut(s)	39, 1235
BseDI	CCNNGG	7 cut(s)	280, 305, 1311, 1513, 1621, 1848, 1863
BseGI	GGATG	2 cut(s)	822, 1573
BseJI	GATNNNNATC	1 cut(s)	413
BseLI	CCNNNNNNNGG	5 cut(s)	228, 306, 731, 804, 1919
BseMI	GCAATG	1 cut(s)	1596
BseMII	CTCAG	6 cut(s)	394, 531, 536, 661, 1711, 1818
BseNI	ACTGG	5 cut(s)	75, 99, 295, 441, 1160
BseRI	GAGGAG	3 cut(s)	132, 168, 1894
BseSI	GKGCMC	1 cut(s)	1272
BseXI	GCAGC	4 cut(s)	513, 733, 926, 1536
BsgI	GTGCAG	1 cut(s)	1398
Bsh1236I	CGCG	2 cut(s)	697, 1254
BshFI	GGCC	2 cut(s)	645, 657
BshVI	ATCGAT	2 cut(s)	39, 1235
BsiHKAI	GWGCWC	1 cut(s)	574
BsiSI	CCGG	3 cut(s)	1179, 1371, 1565
BslFI	GGGAC	1 cut(s)	1301
BslI	CCNNNNNNNGG	5 cut(s)	228, 306, 731, 804, 1919
BsmAI	GTCTC	2 cut(s)	370, 1252
BsmFI	GGGAC	1 cut(s)	1301
BsmI	GAATGC	1 cut(s)	1616
BsnI	GGCC	2 cut(s)	645, 657
Bsp119I	TTCGAA	3 cut(s)	51, 1389, 1931
Bsp1286I	GDGCHC	2 cut(s)	574, 1272
Bsp1407I	TGTACA	1 cut(s)	1134
Bsp143I	GATC	8 cut(s)	269, 408, 621, 1118, 1141, 1213, 1236, 1558
Bsp1720I	GCTNAGC	1 cut(s)	522
BspACI	CCGC	3 cut(s)	732, 957, 1533
BspANI	GGCC	2 cut(s)	645, 657
BspCNI	CTCAG	6 cut(s)	393, 530, 535, 660, 1710, 1819
BspDI	ATCGAT	2 cut(s)	39, 1235
BspFNI	CGCG	2 cut(s)	697, 1254
BspHI	TCATGA	1 cut(s)	1210
BspLI	GGNNCC	5 cut(s)	330, 637, 949, 1317, 1869
BspMAI	CTGCAG	1 cut(s)	916
BspPI	GGATC	3 cut(s)	403, 629, 1231
BspQI	GCTCTTC	1 cut(s)	1860
BspT104I	TTCGAA	3 cut(s)	51, 1389, 1931
BsrDI	GCAATG	1 cut(s)	1596
BsrFI	RCCGGY	1 cut(s)	1178
BsrGI	TGTACA	1 cut(s)	1134
BsrI	ACTGG	5 cut(s)	75, 99, 295, 441, 1160
BssAI	RCCGGY	1 cut(s)	1178
BssECI	CCNNGG	7 cut(s)	280, 305, 1311, 1513, 1621, 1848, 1863
BssMI	GATC	8 cut(s)	269, 408, 621, 1118, 1141, 1213, 1236, 1558
BssNI	GRCGYC	1 cut(s)	1200
BssSI	CACGAG	1 cut(s)	616
BssT1I	CCWWGG	2 cut(s)	280, 1513
Bst2BI	CACGAG	1 cut(s)	616
Bst2UI	CCWGG	5 cut(s)	131, 306, 1241, 1347, 1622
Bst4CI	ACNGT	6 cut(s)	109, 145, 202, 496, 892, 1382
Bst6I	CTCTTC	4 cut(s)	360, 661, 716, 1860
BstACI	GRCGYC	1 cut(s)	1200
BstAPI	GCANNNNNTGC	1 cut(s)	1421
BstAUI	TGTACA	1 cut(s)	1134
BstBI	TTCGAA	3 cut(s)	51, 1389, 1931
BstC8I	GCNNGC	5 cut(s)	734, 1084, 1426, 1465, 1883
BstDEI	CTNAG	7 cut(s)	380, 517, 522, 647, 1195, 1697, 1827
BstDSI	CCRYGG	1 cut(s)	1863
BstEII	GGTNACC	1 cut(s)	65
BstENI	CCTNNNNNAGG	1 cut(s)	802
BstF5I	GGATG	2 cut(s)	822, 1573
BstFNI	CGCG	2 cut(s)	697, 1254
BstH2I	RGCGCY	1 cut(s)	747
BstHHI	GCGC	2 cut(s)	746, 1164
BstKTI	GATC	8 cut(s)	272, 411, 624, 1121, 1144, 1216, 1239, 1561
BstMAI	GTCTC	2 cut(s)	370, 1252
BstMBI	GATC	8 cut(s)	269, 408, 621, 1118, 1141, 1213, 1236, 1558
BstMWI	GCNNNNNNNGC	8 cut(s)	119, 694, 703, 914, 965, 1083, 1421, 1882
BstNI	CCWGG	5 cut(s)	131, 306, 1241, 1347, 1622
BstNSI	RCATGY	3 cut(s)	1031, 1135, 1885
BstPI	GGTNACC	1 cut(s)	65
BstSCI	CCNGG	6 cut(s)	129, 304, 1239, 1345, 1563, 1620
BstSFI	CTRYAG	5 cut(s)	201, 265, 912, 1040, 1188
BstSLI	GKGCMC	1 cut(s)	1272
BstUI	CGCG	2 cut(s)	697, 1254
BstV1I	GCAGC	4 cut(s)	513, 733, 926, 1536
BstV2I	GAAGAC	3 cut(s)	863, 870, 1844
BstX2I	RGATCY	1 cut(s)	408
BstYI	RGATCY	1 cut(s)	408
Bsu15I	ATCGAT	2 cut(s)	39, 1235
BsuRI	GGCC	2 cut(s)	645, 657
BsuTUI	ATCGAT	2 cut(s)	39, 1235
BtgI	CCRYGG	1 cut(s)	1863
BtsCI	GGATG	2 cut(s)	822, 1573
BtsI	GCAGTG	1 cut(s)	1913
BtsIMutI	CAGTG	7 cut(s)	434, 655, 1344, 1387, 1705, 1824, 1913
Cac8I	GCNNGC	5 cut(s)	734, 1084, 1426, 1465, 1883
CciI	TCATGA	1 cut(s)	1210
CfoI	GCGC	2 cut(s)	746, 1164
Cfr10I	RCCGGY	1 cut(s)	1178
Cfr13I	GGNCC	3 cut(s)	329, 902, 1315
ClaI	ATCGAT	2 cut(s)	39, 1235
CseI	GACGC	2 cut(s)	738, 1189
Csp6I	GTAC	2 cut(s)	1135, 1582
CviQI	GTAC	2 cut(s)	1135, 1582
DdeI	CTNAG	7 cut(s)	380, 517, 522, 647, 1195, 1697, 1827
DpnI	GATC	8 cut(s)	271, 410, 623, 1120, 1143, 1215, 1238, 1560
DpnII	GATC	8 cut(s)	269, 408, 621, 1118, 1141, 1213, 1236, 1558
DriI	GACNNNNNGTC	1 cut(s)	544
Eam1104I	CTCTTC	4 cut(s)	360, 661, 716, 1860
Eam1105I	GACNNNNNGTC	1 cut(s)	544
EarI	CTCTTC	4 cut(s)	360, 661, 716, 1860
Eco130I	CCWWGG	2 cut(s)	280, 1513
Eco147I	AGGCCT	1 cut(s)	645
Eco47I	GGWCC	3 cut(s)	329, 902, 1315
Eco47III	AGCGCT	1 cut(s)	745
Eco57I	CTGAAG	1 cut(s)	861
Eco91I	GGTNACC	1 cut(s)	65
EcoNI	CCTNNNNNAGG	1 cut(s)	802
EcoO109I	RGGNCCY	1 cut(s)	329
EcoO65I	GGTNACC	1 cut(s)	65
EcoRII	CCWGG	5 cut(s)	129, 304, 1239, 1345, 1620
EcoT14I	CCWWGG	2 cut(s)	280, 1513
EcoT22I	ATGCAT	2 cut(s)	1234, 1618
ErhI	CCWWGG	2 cut(s)	280, 1513
FalI	AAGNNNNNCTT	2 cut(s)	695, 727
FaqI	GGGAC	1 cut(s)	1301
FauI	CCCGC	2 cut(s)	725, 964
FauNDI	CATATG	1 cut(s)	457
FblI	GTMKAC	1 cut(s)	350
Fnu4HI	GCNGC	4 cut(s)	527, 747, 915, 1550
FokI	GGATG	2 cut(s)	809, 1580
Fsp4HI	GCNGC	4 cut(s)	527, 747, 915, 1550
FspBI	CTAG	3 cut(s)	114, 834, 1217
GlaI	GCGC	2 cut(s)	745, 1163
GluI	GCNGC	4 cut(s)	527, 747, 915, 1550
GsuI	CTGGAG	3 cut(s)	116, 152, 1368
HaeII	RGCGCY	1 cut(s)	747
HaeIII	GGCC	2 cut(s)	645, 657
HapII	CCGG	3 cut(s)	1179, 1371, 1565
HgaI	GACGC	2 cut(s)	738, 1189
HhaI	GCGC	2 cut(s)	746, 1164
Hin1I	GRCGYC	1 cut(s)	1200
Hin6I	GCGC	2 cut(s)	744, 1162
HinP1I	GCGC	2 cut(s)	744, 1162
HindIII	AAGCTT	1 cut(s)	704
HinfI	GANTC	9 cut(s)	15, 378, 539, 669, 1342, 1386, 1509, 1539, 1897
HpaII	CCGG	3 cut(s)	1179, 1371, 1565
HphI	GGTGA	5 cut(s)	218, 256, 1004, 1715, 1906
Hpy166II	GTNNAC	3 cut(s)	351, 1129, 1706
Hpy188I	TCNGA	7 cut(s)	32, 167, 556, 626, 841, 1003, 1679
Hpy188III	TCNNGA	5 cut(s)	359, 1126, 1211, 1324, 1819
Hpy8I	GTNNAC	3 cut(s)	351, 1129, 1706
HpyAV	CCTTC	3 cut(s)	136, 248, 342
HpyCH4III	ACNGT	6 cut(s)	109, 145, 202, 496, 892, 1382
HpyCH4IV	ACGT	1 cut(s)	47
HpyF10VI	GCNNNNNNNGC	8 cut(s)	119, 694, 703, 914, 965, 1083, 1421, 1882
HpyF3I	CTNAG	7 cut(s)	380, 517, 522, 647, 1195, 1697, 1827
HpySE526I	ACGT	1 cut(s)	47
Hsp92I	GRCGYC	1 cut(s)	1200
HspAI	GCGC	2 cut(s)	744, 1162
Kzo9I	GATC	8 cut(s)	269, 408, 621, 1118, 1141, 1213, 1236, 1558
LguI	GCTCTTC	1 cut(s)	1860
LmnI	GCTCC	5 cut(s)	119, 155, 635, 1349, 1873
Lsp1109I	GCAGC	4 cut(s)	513, 733, 926, 1536
LweI	GCATC	5 cut(s)	31, 352, 595, 1241, 1476
MaeI	CTAG	3 cut(s)	114, 834, 1217
MaeII	ACGT	1 cut(s)	47
MaeIII	GTNAC	3 cut(s)	65, 460, 1742
MalI	GATC	8 cut(s)	271, 410, 623, 1120, 1143, 1215, 1238, 1560
MboI	GATC	8 cut(s)	269, 408, 621, 1118, 1141, 1213, 1236, 1558
MflI	RGATCY	1 cut(s)	408
MhlI	GDGCHC	2 cut(s)	574, 1272
MluCI	AATT	8 cut(s)	530, 771, 1006, 1051, 1332, 1458, 1640, 1797
MlyI	GAGTC	3 cut(s)	372, 533, 678
MmeI	TCCRAC	2 cut(s)	55, 534
Mph1103I	ATGCAT	2 cut(s)	1234, 1618
MroXI	GAANNNNTTC	2 cut(s)	846, 1684
MseI	TTAA	5 cut(s)	197, 491, 1331, 1632, 1758
MslI	CAYNNNNRTG	6 cut(s)	24, 39, 1227, 1275, 1611, 1886
MspA1I	CMGCKG	2 cut(s)	526, 1549
MspI	CCGG	3 cut(s)	1179, 1371, 1565
MspR9I	CCNGG	6 cut(s)	131, 306, 1241, 1347, 1565, 1622
Mva1269I	GAATGC	1 cut(s)	1616
MvaI	CCWGG	5 cut(s)	131, 306, 1241, 1347, 1622
MvnI	CGCG	2 cut(s)	697, 1254
MwoI	GCNNNNNNNGC	8 cut(s)	119, 694, 703, 914, 965, 1083, 1421, 1882
NciI	CCSGG	1 cut(s)	1565
NdeI	CATATG	1 cut(s)	457
NdeII	GATC	8 cut(s)	269, 408, 621, 1118, 1141, 1213, 1236, 1558
NlaIV	GGNNCC	5 cut(s)	330, 637, 949, 1317, 1869
NmeAIII	GCCGAG	1 cut(s)	1829
NmuCI	GTSAC	1 cut(s)	460
NsiI	ATGCAT	2 cut(s)	1234, 1618
NspI	RCATGY	3 cut(s)	1031, 1135, 1885
NspV	TTCGAA	3 cut(s)	51, 1389, 1931
OliI	CACNNNNGTG	1 cut(s)	1275
PaeI	GCATGC	1 cut(s)	1885
PagI	TCATGA	1 cut(s)	1210
PceI	AGGCCT	1 cut(s)	645
PciI	ACATGT	2 cut(s)	1027, 1131
PciSI	GCTCTTC	1 cut(s)	1860
PcsI	WCGNNNNNNNCGW	1 cut(s)	504
PctI	GAATGC	1 cut(s)	1616
PdmI	GAANNNNTTC	2 cut(s)	846, 1684
PfeI	GAWTC	6 cut(s)	15, 1342, 1386, 1509, 1539, 1897
PflMI	CCANNNNNTGG	1 cut(s)	1919
PfoI	TCCNGGA	3 cut(s)	129, 1345, 1563
PkrI	GCNGC	4 cut(s)	528, 748, 916, 1551
PleI	GAGTC	3 cut(s)	372, 533, 677
PpsI	GAGTC	3 cut(s)	372, 533, 677
PpuMI	RGGWCCY	1 cut(s)	329
PscI	ACATGT	2 cut(s)	1027, 1131
Psp5II	RGGWCCY	1 cut(s)	329
Psp6I	CCWGG	5 cut(s)	129, 304, 1239, 1345, 1620
PspEI	GGTNACC	1 cut(s)	65
PspGI	CCWGG	5 cut(s)	129, 304, 1239, 1345, 1620
PspN4I	GGNNCC	5 cut(s)	330, 637, 949, 1317, 1869
PspPI	GGNCC	3 cut(s)	329, 902, 1315
PspPPI	RGGWCCY	1 cut(s)	329
PstI	CTGCAG	1 cut(s)	916
PsuI	RGATCY	1 cut(s)	408
PvuII	CAGCTG	2 cut(s)	526, 1549
RsaI	GTAC	2 cut(s)	1136, 1583
RsaNI	GTAC	2 cut(s)	1135, 1582
RseI	CAYNNNNRTG	6 cut(s)	24, 39, 1227, 1275, 1611, 1886
SapI	GCTCTTC	1 cut(s)	1860
SaqAI	TTAA	5 cut(s)	197, 491, 1331, 1632, 1758
SatI	GCNGC	4 cut(s)	527, 747, 915, 1550
Sau3AI	GATC	8 cut(s)	269, 408, 621, 1118, 1141, 1213, 1236, 1558
Sau96I	GGNCC	3 cut(s)	329, 902, 1315
SchI	GAGTC	3 cut(s)	372, 533, 678
ScrFI	CCNGG	6 cut(s)	131, 306, 1241, 1347, 1565, 1622
SduI	GDGCHC	2 cut(s)	574, 1272
SfaNI	GCATC	5 cut(s)	31, 352, 595, 1241, 1476
SfcI	CTRYAG	5 cut(s)	201, 265, 912, 1040, 1188
SfuI	TTCGAA	3 cut(s)	51, 1389, 1931
SinI	GGWCC	3 cut(s)	329, 902, 1315
SmiMI	CAYNNNNRTG	6 cut(s)	24, 39, 1227, 1275, 1611, 1886
SmlI	CTYRAG	1 cut(s)	1817
SmoI	CTYRAG	1 cut(s)	1817
SphI	GCATGC	1 cut(s)	1885
Sse9I	AATT	8 cut(s)	530, 771, 1006, 1051, 1332, 1458, 1640, 1797
SseBI	AGGCCT	1 cut(s)	645
SsiI	CCGC	3 cut(s)	732, 957, 1533
SspMI	CTAG	3 cut(s)	114, 834, 1217
StuI	AGGCCT	1 cut(s)	645
StyD4I	CCNGG	6 cut(s)	129, 304, 1239, 1345, 1563, 1620
StyI	CCWWGG	2 cut(s)	280, 1513
TaaI	ACNGT	6 cut(s)	109, 145, 202, 496, 892, 1382
TaiI	ACGT	1 cut(s)	50
TaqI	TCGA	8 cut(s)	39, 51, 498, 1144, 1235, 1389, 1795, 1931
TaqII	GACCGA	2 cut(s)	890, 1303
TasI	AATT	8 cut(s)	530, 771, 1006, 1051, 1332, 1458, 1640, 1797
TatI	WGTACW	1 cut(s)	1134
TfiI	GAWTC	6 cut(s)	15, 1342, 1386, 1509, 1539, 1897
Tru1I	TTAA	5 cut(s)	197, 491, 1331, 1632, 1758
Tru9I	TTAA	5 cut(s)	197, 491, 1331, 1632, 1758
TscAI	CASTG	7 cut(s)	441, 655, 1344, 1387, 1705, 1831, 1920
TseFI	GTSAC	1 cut(s)	460
TseI	GCWGC	4 cut(s)	526, 746, 914, 1549
Tsp45I	GTSAC	1 cut(s)	460
TspDTI	ATGAA	4 cut(s)	72, 150, 626, 1653
TspGWI	ACGGA	1 cut(s)	1852
TspRI	CASTG	7 cut(s)	441, 655, 1344, 1387, 1705, 1831, 1920
Van91I	CCANNNNNTGG	1 cut(s)	1919
VpaK11BI	GGWCC	3 cut(s)	329, 902, 1315
XagI	CCTNNNNNAGG	1 cut(s)	802
XapI	RAATTY	3 cut(s)	1006, 1640, 1797
XceI	RCATGY	3 cut(s)	1031, 1135, 1885
XcmI	CCANNNNNNNNNTGG	2 cut(s)	91, 287
XmiI	GTMKAC	1 cut(s)	350
XmnI	GAANNNNTTC	2 cut(s)	846, 1684
XspI	CTAG	3 cut(s)	114, 834, 1217
Zsp2I	ATGCAT	2 cut(s)	1234, 1618

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.