Rh2CG486400

ABC transporter G family member

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2C
Physical Location & Seq
Forward (+)
65255678 .. 65275971
20294 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2CG486400.1

Sequence Viewer

Length: 1023 bp
ATGGGTTTGCAAAATGCCATGAACACGAGGATCGGAGGTTGGGGAGCCAAGGGCCTCAGTGGTGGCGAAAAGAGAAGAGTTAGTATCTGCATTGAGCTTCTTACACAACCAAAACTTCTCTTTCTGGATGAACCAACAAGCGGACTTGACAGTGCTGCGTCTTTTTATGTGATGAGCAGAATTGCAAATCTTGGTCATAAATCGTCTCAGAGGACCATAGTTGCTTCCATCCATCAGCCTAGCTCTGAAGTCTTTCAACTCTTTGACAATCTTTGTCTTCTGTCTTCCGGCGAAACTGTATATTTTGGTCCTGCTTTTGCAGCGAATGAATTTTTCGCTGCAAGTGGTTTTCCATGTCCAACTCTCCTACATCCATCGGATCACTTCCTCAAGACCATAAACAATGATTTTGAGCTGGACATCGACAAAGGTATAGCAGGAAAGACACCCACAGAGGAAGCTATTCATACTCTAATGAAGTCATATGAAACATTTGAAAGTTATCACCAACTTCAAAGACAAATAGCTGAATTATACAAGAAGGTATTTGAACGTGAAAGACTGAACGGGCACTATGGTGTTAGTGCATTTGTTTTCGCCAACACATTTTCTTCAATGCCTTTGTTAATGTTGATTTCACTGATTCCTGGCGCAACAACCTACTATCTTGCTGGACTTCACAGTGGATTTGAACACTTCTTCTACTTTGCTTCTGCTCTATTTGCTTGCATGATGCTGGTTGAGAGCCTAATGATGATAGTTGCGAGCATTGTACCGAATTTCCTAATGGGCATAATAGCTGGTTCTGGATTGCAAGGGATTGTGTTGTTATGCGGCGGATTCTTCCGGCTACCAAATGATCTTCCGGATATCTTGTGTGGAAATACCCATTGTACCATATTGCCTTCCACAAGTATGCATTCCAGGGAATGTTTAAGAATGAATTTGAAGGAACAACGTTTCCGAATGATGATCAACTTAGAATCGGTAACTCTAAGTGGCTTAGTGGCTACAGCATTTTGA

Protein Analysis

340

Amino Acids

37.54

Weight (kDa)

6.25

Isoelectric Point (pI)

42.92

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
ABC_tran PF00005 3 - 47 5.9e-08 ABC transporter
ABC2_membrane_7 PF19055 78 - 134 1.6e-08 ABC-2 type transporter
ABC2_membrane PF01061 180 - 289 3e-19 ABC-2 type transporter
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000287)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g20390 FvH4_1g20390 FvH4_1g20390 FvH4_1g20390 FvH4_1g20390 FvH4_1g20400 FvH4_1g20400 FvH4_1g20400 FvH4_1g20400 FvH4_1g20400 FvH4_1g20410 FvH4_1g20410 FvH4_6g39250 FvH4_6g39250
malus_domestica MD00G1036800.v1.1 MD05G1042600.v1.1 MD10G1049900.v1.1
prunus_persica Prupe.6G191500_v2.0.a1 Prupe.8G064300_v2.0.a1 Prupe.8G064300_v2.0.a1 Prupe.8G064400_v2.0.a1
pyrus_communis pycom05g03520 pycom10g03500 pycom10g03510 pycom15g28250
rosa_chinensis RchiOBHm_Chr1g0336561 RchiOBHm_Chr2g0112551 RchiOBHm_Chr2g0112561 RchiOBHm_Chr2g0112631 RchiOBHm_Chr2g0112641 RchiOBHm_Chr2g0153091 RchiOBHm_Chr2g0153111 RchiOBHm_Chr2g0153141 RchiOBHm_Chr2g0153161 RchiOBHm_Chr2g0153171
rosa_laevigata RLG00000017991 RLG00000017992 RLG00000017995 RLG00000017997 RLG00000020676 RLG00000020677 RLG00000020678 RLG00000020682
rosa_multiflora Rmu_co8208234.1_g000001 Rmu_co8218328.1_g000001 Rmu_co8425243.1_g000001 Rmu_sc0000218.1_g000037 Rmu_sc0000218.1_g000044 Rmu_sc0000218.1_g000047 Rmu_sc0000218.1_g000052 Rmu_sc0001155.1_g000011 Rmu_sc0001155.1_g000026 Rmu_sc0001155.1_g000029 Rmu_sc0001499.1_g000001 Rmu_sc0001499.1_g000040 Rmu_sc0002401.1_g000032 Rmu_sc0002401.1_g000033 Rmu_sc0004070.1_g000003 Rmu_sc0004070.1_g000004 Rmu_sc0005547.1_g000001 Rmu_sc0006062.1_g000002 Rmu_sc0009780.1_g000005 Rmu_sc0013071.1_g000001 Rmu_sc0013071.1_g000012
rosa_roxburghii Rroxscaffold_2G00095130 Rroxscaffold_2G00095140 Rroxscaffold_2G00095160 Rroxscaffold_2G00095180 Rroxscaffold_2G00095190 Rroxscaffold_2G00095200 Rroxscaffold_2G00131290 Rroxscaffold_2G00131320 Rroxscaffold_2G00131350
rosa_rugosa Rorug02G0181500 Rorug02G0181500 Rorug02G0181600 Rorug02G0181700 Rorug02G0437300 Rorug02G0437400
rosa_samantha Rh1DG154100 Rh2AG235200 Rh2AG235300 Rh2AG235400 Rh2AG235600 Rh2AG235800 Rh2AG499700 Rh2AG499800 Rh2AG500000 Rh2AG500100 Rh2AG500200 Rh2BG248500 Rh2BG248700 Rh2BG248800 Rh2BG511000 Rh2BG511200 Rh2BG511300 Rh2BG511600 Rh2CG239600 Rh2CG239700 Rh2CG239900 Rh2CG240000 Rh2CG485900 Rh2CG486000 Rh2CG486200 Rh2CG486300 Rh2CG486400 Rh2DG242500 Rh2DG242600 Rh2DG242700 Rh2DG242900 Rh2DG243100 Rh2DG522800 Rh2DG523100 Rh2DG523200 Rh2DG523500 Rh2DG523600 Rh5DG200200
rosa_wichuraiana Rw2G018200 Rw2G018210 Rw2G018230 Rw2G018240 Rw2G041010 Rw2G041020 Rw2G041030 Rw2G041050

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccIII TCCGGA 1 cut(s) 865
AciI CCGC 3 cut(s) 141, 834, 837
AclI AACGTT 1 cut(s) 958
AclWI GGATC 2 cut(s) 38, 387
AcsI RAATTY 3 cut(s) 329, 778, 943
AcuI CTGAAG 1 cut(s) 267
AfaI GTAC 2 cut(s) 774, 895
AfiI CCNNNNNNNGG 1 cut(s) 140
AgsI TTSAA 7 cut(s) 257, 497, 515, 551, 615, 692, 949
AjnI CCWGG 2 cut(s) 646, 923
AleI CACNNNNGTG 1 cut(s) 576
AloI GAACNNNNNNTCC 2 cut(s) 945, 977
AluBI AGCT 6 cut(s) 97, 243, 415, 461, 527, 800
AluI AGCT 6 cut(s) 97, 243, 415, 461, 527, 800
Alw26I GTCTC 1 cut(s) 210
AlwI GGATC 2 cut(s) 38, 387
Aor13HI TCCGGA 1 cut(s) 865
AoxI GGCC 1 cut(s) 52
ApeKI GCWGC 3 cut(s) 155, 320, 338
ApoI RAATTY 3 cut(s) 329, 778, 943
Asp700I GAANNNNTTC 2 cut(s) 252, 462
AspLEI GCGC 1 cut(s) 653
AspS9I GGNCC 3 cut(s) 52, 213, 308
AsuHPI GGTGA 1 cut(s) 497
AvaII GGWCC 2 cut(s) 213, 308
BaeGI GKGCMC 1 cut(s) 573
BauI CACGAG 1 cut(s) 25
BbsI GAAGAC 2 cut(s) 269, 276
BbvI GCAGC 3 cut(s) 142, 325, 332
BccI CCATC 3 cut(s) 236, 240, 382
BciT130I CCWGG 2 cut(s) 648, 925
BclI TGATCA 1 cut(s) 972
BcoDI GTCTC 1 cut(s) 210
BfaI CTAG 1 cut(s) 240
BfmI CTRYAG 1 cut(s) 1011
BisI GCNGC 4 cut(s) 156, 321, 339, 835
BlsI GCNGC 4 cut(s) 157, 322, 340, 836
Bme1390I CCNGG 2 cut(s) 648, 925
Bme18I GGWCC 2 cut(s) 213, 308
BmgT120I GGNCC 3 cut(s) 52, 213, 308
BmiI GGNNCC 1 cut(s) 46
BmrFI CCNGG 2 cut(s) 648, 925
BmsI GCATC 1 cut(s) 723
BpiI GAAGAC 2 cut(s) 269, 276
BpuEI CTTGAG 1 cut(s) 374
BsaJI CCNNGG 2 cut(s) 48, 924
BsaWI WCCGGW 1 cut(s) 865
Bsc4I CCNNNNNNNGG 1 cut(s) 140
BseAI TCCGGA 1 cut(s) 865
BseBI CCWGG 2 cut(s) 648, 925
BseDI CCNNGG 2 cut(s) 48, 924
BseGI GGATG 3 cut(s) 133, 228, 370
BseLI CCNNNNNNNGG 1 cut(s) 140
BseMII CTCAG 2 cut(s) 70, 221
BseSI GKGCMC 1 cut(s) 573
BseXI GCAGC 3 cut(s) 142, 325, 332
BshFI GGCC 1 cut(s) 54
BsiSI CCGG 3 cut(s) 288, 847, 866
BslI CCNNNNNNNGG 1 cut(s) 140
BsmAI GTCTC 1 cut(s) 210
BsmBI CGTCTC 1 cut(s) 210
BsmI GAATGC 1 cut(s) 919
BsnI GGCC 1 cut(s) 54
Bsp1286I GDGCHC 1 cut(s) 573
Bsp13I TCCGGA 1 cut(s) 865
Bsp143I GATC 4 cut(s) 30, 379, 859, 972
BspACI CCGC 3 cut(s) 141, 834, 837
BspANI GGCC 1 cut(s) 54
BspCNI CTCAG 2 cut(s) 69, 220
BspEI TCCGGA 1 cut(s) 865
BspLI GGNNCC 1 cut(s) 46
BspPI GGATC 2 cut(s) 38, 387
BssECI CCNNGG 2 cut(s) 48, 924
BssMI GATC 4 cut(s) 30, 379, 859, 972
BssSI CACGAG 1 cut(s) 25
BssT1I CCWWGG 1 cut(s) 48
Bst2BI CACGAG 1 cut(s) 25
Bst2UI CCWGG 2 cut(s) 648, 925
Bst4CI ACNGT 3 cut(s) 152, 298, 683
Bst6I CTCTTC 1 cut(s) 70
BstC8I GCNNGC 2 cut(s) 727, 766
BstDEI CTNAG 5 cut(s) 56, 207, 979, 995, 1003
BstF5I GGATG 3 cut(s) 133, 228, 370
BstHHI GCGC 1 cut(s) 653
BstKTI GATC 4 cut(s) 33, 382, 862, 975
BstMAI GTCTC 1 cut(s) 210
BstMBI GATC 4 cut(s) 30, 379, 859, 972
BstMWI GCNNNNNNNGC 2 cut(s) 320, 722
BstNI CCWGG 2 cut(s) 648, 925
BstSCI CCNGG 2 cut(s) 646, 923
BstSFI CTRYAG 1 cut(s) 1011
BstSLI GKGCMC 1 cut(s) 573
BstV1I GCAGC 3 cut(s) 142, 325, 332
BstV2I GAAGAC 2 cut(s) 269, 276
BsuRI GGCC 1 cut(s) 54
BtsCI GGATG 3 cut(s) 133, 228, 370
BtsIMutI CAGTG 4 cut(s) 64, 157, 638, 688
Cac8I GCNNGC 2 cut(s) 727, 766
CfoI GCGC 1 cut(s) 653
Cfr13I GGNCC 3 cut(s) 52, 213, 308
CseI GACGC 1 cut(s) 147
Csp6I GTAC 2 cut(s) 773, 894
CviAII CATG 3 cut(s) 19, 354, 730
CviQI GTAC 2 cut(s) 773, 894
DdeI CTNAG 5 cut(s) 56, 207, 979, 995, 1003
DpnI GATC 4 cut(s) 32, 381, 861, 974
DpnII GATC 4 cut(s) 30, 379, 859, 972
Eam1104I CTCTTC 1 cut(s) 70
EarI CTCTTC 1 cut(s) 70
EciI GGCGGA 1 cut(s) 852
Eco130I CCWWGG 1 cut(s) 48
Eco32I GATATC 1 cut(s) 871
Eco47I GGWCC 2 cut(s) 213, 308
Eco57I CTGAAG 1 cut(s) 267
EcoO109I RGGNCCY 1 cut(s) 52
EcoRII CCWGG 2 cut(s) 646, 923
EcoRV GATATC 1 cut(s) 871
EcoT14I CCWWGG 1 cut(s) 48
EcoT22I ATGCAT 1 cut(s) 921
ErhI CCWWGG 1 cut(s) 48
Esp3I CGTCTC 1 cut(s) 210
FaeI CATG 3 cut(s) 22, 357, 733
FatI CATG 3 cut(s) 18, 353, 729
FauNDI CATATG 1 cut(s) 484
FbaI TGATCA 1 cut(s) 972
Fnu4HI GCNGC 4 cut(s) 156, 321, 339, 835
FokI GGATG 3 cut(s) 140, 215, 357
Fsp4HI GCNGC 4 cut(s) 156, 321, 339, 835
FspBI CTAG 1 cut(s) 240
GlaI GCGC 1 cut(s) 652
GluI GCNGC 4 cut(s) 156, 321, 339, 835
HaeIII GGCC 1 cut(s) 54
HapII CCGG 3 cut(s) 288, 847, 866
HgaI GACGC 1 cut(s) 147
HhaI GCGC 1 cut(s) 653
Hin1II CATG 3 cut(s) 22, 357, 733
Hin6I GCGC 1 cut(s) 651
HinP1I GCGC 1 cut(s) 651
HinfI GANTC 3 cut(s) 643, 840, 983
HpaII CCGG 3 cut(s) 288, 847, 866
HphI GGTGA 1 cut(s) 497
Hpy188I TCNGA 5 cut(s) 35, 210, 247, 379, 965
Hpy188III TCNNGA 4 cut(s) 125, 391, 807, 866
HpyAV CCTTC 3 cut(s) 535, 915, 943
HpyCH4III ACNGT 3 cut(s) 152, 298, 683
HpyCH4IV ACGT 2 cut(s) 553, 958
HpyCH4V TGCA 9 cut(s) 10, 90, 185, 320, 341, 587, 729, 814, 919
HpyF10VI GCNNNNNNNGC 2 cut(s) 320, 722
HpyF3I CTNAG 5 cut(s) 56, 207, 979, 995, 1003
HpySE526I ACGT 2 cut(s) 553, 958
Hsp92II CATG 3 cut(s) 22, 357, 733
HspAI GCGC 1 cut(s) 651
Kpn2I TCCGGA 1 cut(s) 865
Ksp22I TGATCA 1 cut(s) 972
Kzo9I GATC 4 cut(s) 30, 379, 859, 972
LmnI GCTCC 1 cut(s) 44
Lsp1109I GCAGC 3 cut(s) 142, 325, 332
LweI GCATC 1 cut(s) 723
MaeI CTAG 1 cut(s) 240
MaeII ACGT 2 cut(s) 553, 958
MaeIII GTNAC 1 cut(s) 988
MalI GATC 4 cut(s) 32, 381, 861, 974
MboI GATC 4 cut(s) 30, 379, 859, 972
MboII GAAGA 7 cut(s) 87, 269, 276, 603, 691, 835, 854
MhlI GDGCHC 1 cut(s) 573
MluCI AATT 5 cut(s) 180, 329, 530, 778, 943
MmeI TCCRAC 1 cut(s) 383
MnlI CCTC 6 cut(s) 21, 29, 65, 204, 398, 448
Mph1103I ATGCAT 1 cut(s) 921
MroI TCCGGA 1 cut(s) 865
MroXI GAANNNNTTC 2 cut(s) 252, 462
MseI TTAA 2 cut(s) 626, 935
MslI CAYNNNNRTG 2 cut(s) 576, 914
MspI CCGG 3 cut(s) 288, 847, 866
MspR9I CCNGG 2 cut(s) 648, 925
Mva1269I GAATGC 1 cut(s) 919
MvaI CCWGG 2 cut(s) 648, 925
MwoI GCNNNNNNNGC 2 cut(s) 320, 722
NdeI CATATG 1 cut(s) 484
NdeII GATC 4 cut(s) 30, 379, 859, 972
NlaIII CATG 3 cut(s) 22, 357, 733
NlaIV GGNNCC 1 cut(s) 46
NsiI ATGCAT 1 cut(s) 921
OliI CACNNNNGTG 1 cut(s) 576
PctI GAATGC 1 cut(s) 919
PdmI GAANNNNTTC 2 cut(s) 252, 462
PfeI GAWTC 3 cut(s) 643, 840, 983
PkrI GCNGC 4 cut(s) 157, 322, 340, 836
Psp1406I AACGTT 1 cut(s) 958
Psp6I CCWGG 2 cut(s) 646, 923
PspGI CCWGG 2 cut(s) 646, 923
PspN4I GGNNCC 1 cut(s) 46
PspPI GGNCC 3 cut(s) 52, 213, 308
RsaI GTAC 2 cut(s) 774, 895
RsaNI GTAC 2 cut(s) 773, 894
RseI CAYNNNNRTG 2 cut(s) 576, 914
SaqAI TTAA 2 cut(s) 626, 935
SatI GCNGC 4 cut(s) 156, 321, 339, 835
Sau3AI GATC 4 cut(s) 30, 379, 859, 972
Sau96I GGNCC 3 cut(s) 52, 213, 308
ScrFI CCNGG 2 cut(s) 648, 925
SduI GDGCHC 1 cut(s) 573
SfaNI GCATC 1 cut(s) 723
SfcI CTRYAG 1 cut(s) 1011
SinI GGWCC 2 cut(s) 213, 308
SmiMI CAYNNNNRTG 2 cut(s) 576, 914
SmlI CTYRAG 1 cut(s) 389
SmoI CTYRAG 1 cut(s) 389
Sse9I AATT 5 cut(s) 180, 329, 530, 778, 943
SsiI CCGC 3 cut(s) 141, 834, 837
SspMI CTAG 1 cut(s) 240
StyD4I CCNGG 2 cut(s) 646, 923
StyI CCWWGG 1 cut(s) 48
TaaI ACNGT 3 cut(s) 152, 298, 683
TaiI ACGT 2 cut(s) 556, 961
TaqI TCGA 1 cut(s) 423
TasI AATT 5 cut(s) 180, 329, 530, 778, 943
TauI GCSGC 1 cut(s) 837
TfiI GAWTC 3 cut(s) 643, 840, 983
Tru1I TTAA 2 cut(s) 626, 935
Tru9I TTAA 2 cut(s) 626, 935
TscAI CASTG 4 cut(s) 64, 157, 645, 688
TseI GCWGC 3 cut(s) 155, 320, 338
TspDTI ATGAA 7 cut(s) 35, 144, 342, 455, 491, 501, 956
TspRI CASTG 4 cut(s) 64, 157, 645, 688
VpaK11BI GGWCC 2 cut(s) 213, 308
XapI RAATTY 3 cut(s) 329, 778, 943
XmnI GAANNNNTTC 2 cut(s) 252, 462
XspI CTAG 1 cut(s) 240
Zsp2I ATGCAT 1 cut(s) 921
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.