Rh2CG239700

ABC transporter G family member

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2C
Physical Location & Seq
Forward (+)
24851332 .. 24853699
2368 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2CG239700.1

Sequence Viewer

Length: 612 bp
ATGGAGTCTTCTTCTCCAGATAACTTTCCAAGATGGGCACCAAGTCCAAGCCCCTCGAGAGTATTACTATCACCTGTGGAAGACACCAAGATCAAGTCGAATGCTGCTCGTGATTCTGCAGAGAATGGCTTATCCTTATCATGTTCTAGCATGGAAAGGATTTTCCCATTTAGCATTGGATTCAAAAGCACTGCTACTACTAGTACTGCTTATGCTTCTGCGGTTGAAAAGTTACTAGAAGCTGAATGTGCTTACGTTAAAAGCAGTGGTACTACTGATATTGAAATTGCATCAAGAAAGAAAGGTATTTCTTTGACATGGGAGGACTTGTGGGTTGGAGTAGCAGATCGGAAAAGGGAGCAGCGAATGATTTTGCAGAAGCTTACCGGGTTTGCTCAACCTGGTGAGGTTTTGGCTATTATGGGTCCTTCTGGCTGTGGCAAATCAACCCTTTTGGATGCTTTAGCAGGAAGGCTAAGTTCAAGCACACAGCACAGAGGGAAGATCCTAATCAATGGCCGGAAAGAAACACTTGCCTACGGGCTACGGAACCTCGGTAGGGAAATTGAGGGGAATAAACTCACAGAGTATGGAAGTATGGGTAACCGGTAA

Protein Analysis

203

Amino Acids

21.95

Weight (kDa)

9.17

Isoelectric Point (pI)

48.82

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
RsgA_GTPase PF03193 120 - 179 7.8e-06 RsgA GTPase
ABC_tran PF00005 129 - 175 3.9e-10 ABC transporter
AAA_29 PF13555 135 - 163 7.2e-06 P-loop containing region of AAA domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000287)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g20390 FvH4_1g20390 FvH4_1g20390 FvH4_1g20390 FvH4_1g20390 FvH4_1g20400 FvH4_1g20400 FvH4_1g20400 FvH4_1g20400 FvH4_1g20400 FvH4_1g20410 FvH4_1g20410 FvH4_6g39250 FvH4_6g39250
malus_domestica MD00G1036800.v1.1 MD05G1042600.v1.1 MD10G1049900.v1.1
prunus_persica Prupe.6G191500_v2.0.a1 Prupe.8G064300_v2.0.a1 Prupe.8G064300_v2.0.a1 Prupe.8G064400_v2.0.a1
pyrus_communis pycom05g03520 pycom10g03500 pycom10g03510 pycom15g28250
rosa_chinensis RchiOBHm_Chr1g0336561 RchiOBHm_Chr2g0112551 RchiOBHm_Chr2g0112561 RchiOBHm_Chr2g0112631 RchiOBHm_Chr2g0112641 RchiOBHm_Chr2g0153091 RchiOBHm_Chr2g0153111 RchiOBHm_Chr2g0153141 RchiOBHm_Chr2g0153161 RchiOBHm_Chr2g0153171
rosa_laevigata RLG00000017991 RLG00000017992 RLG00000017995 RLG00000017997 RLG00000020676 RLG00000020677 RLG00000020678 RLG00000020682
rosa_multiflora Rmu_co8208234.1_g000001 Rmu_co8218328.1_g000001 Rmu_co8425243.1_g000001 Rmu_sc0000218.1_g000037 Rmu_sc0000218.1_g000044 Rmu_sc0000218.1_g000047 Rmu_sc0000218.1_g000052 Rmu_sc0001155.1_g000011 Rmu_sc0001155.1_g000026 Rmu_sc0001155.1_g000029 Rmu_sc0001499.1_g000001 Rmu_sc0001499.1_g000040 Rmu_sc0002401.1_g000032 Rmu_sc0002401.1_g000033 Rmu_sc0004070.1_g000003 Rmu_sc0004070.1_g000004 Rmu_sc0005547.1_g000001 Rmu_sc0006062.1_g000002 Rmu_sc0009780.1_g000005 Rmu_sc0013071.1_g000001 Rmu_sc0013071.1_g000012
rosa_roxburghii Rroxscaffold_2G00095130 Rroxscaffold_2G00095140 Rroxscaffold_2G00095160 Rroxscaffold_2G00095180 Rroxscaffold_2G00095190 Rroxscaffold_2G00095200 Rroxscaffold_2G00131290 Rroxscaffold_2G00131320 Rroxscaffold_2G00131350
rosa_rugosa Rorug02G0181500 Rorug02G0181500 Rorug02G0181600 Rorug02G0181700 Rorug02G0437300 Rorug02G0437400
rosa_samantha Rh1DG154100 Rh2AG235200 Rh2AG235300 Rh2AG235400 Rh2AG235600 Rh2AG235800 Rh2AG499700 Rh2AG499800 Rh2AG500000 Rh2AG500100 Rh2AG500200 Rh2BG248500 Rh2BG248700 Rh2BG248800 Rh2BG511000 Rh2BG511200 Rh2BG511300 Rh2BG511600 Rh2CG239600 Rh2CG239700 Rh2CG239900 Rh2CG240000 Rh2CG485900 Rh2CG486000 Rh2CG486200 Rh2CG486300 Rh2CG486400 Rh2DG242500 Rh2DG242600 Rh2DG242700 Rh2DG242900 Rh2DG243100 Rh2DG522800 Rh2DG523100 Rh2DG523200 Rh2DG523500 Rh2DG523600 Rh5DG200200
rosa_wichuraiana Rw2G018200 Rw2G018210 Rw2G018230 Rw2G018240 Rw2G041010 Rw2G041020 Rw2G041030 Rw2G041050

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 37
AciI CCGC 1 cut(s) 221
AclWI GGATC 1 cut(s) 499
AcoI YGGCCR 1 cut(s) 517
AfaI GTAC 2 cut(s) 205, 271
AfiI CCNNNNNNNGG 1 cut(s) 559
AgeI ACCGGT 1 cut(s) 606
AgsI TTSAA 4 cut(s) 184, 227, 284, 483
AhlI ACTAGT 1 cut(s) 200
AjnI CCWGG 1 cut(s) 400
AluBI AGCT 2 cut(s) 242, 382
AluI AGCT 2 cut(s) 242, 382
AlwI GGATC 1 cut(s) 499
Ama87I CYCGRG 1 cut(s) 55
AoxI GGCC 1 cut(s) 517
ApeKI GCWGC 2 cut(s) 104, 361
AsiGI ACCGGT 1 cut(s) 606
AspS9I GGNCC 1 cut(s) 425
AsuC2I CCSGG 1 cut(s) 388
AsuHPI GGTGA 2 cut(s) 63, 416
AvaI CYCGRG 1 cut(s) 55
AvaII GGWCC 1 cut(s) 425
BaeGI GKGCMC 1 cut(s) 40
BanI GGYRCC 1 cut(s) 37
BauI CACGAG 1 cut(s) 108
BbsI GAAGAC 1 cut(s) 87
BbvI GCAGC 2 cut(s) 91, 373
BccI CCATC 1 cut(s) 27
BciT130I CCWGG 1 cut(s) 402
BcnI CCSGG 1 cut(s) 388
BcuI ACTAGT 1 cut(s) 200
BfaI CTAG 3 cut(s) 147, 201, 236
BfmI CTRYAG 1 cut(s) 117
BisI GCNGC 2 cut(s) 105, 362
BlsI GCNGC 2 cut(s) 106, 363
BmcAI AGTACT 1 cut(s) 205
Bme1390I CCNGG 2 cut(s) 388, 402
Bme18I GGWCC 1 cut(s) 425
BmeT110I CYCGRG 1 cut(s) 55
BmgT120I GGNCC 1 cut(s) 425
BmiI GGNNCC 3 cut(s) 39, 426, 551
BmrFI CCNGG 2 cut(s) 388, 402
BmsI GCATC 2 cut(s) 299, 448
BpiI GAAGAC 1 cut(s) 87
BpuMI CCSGG 1 cut(s) 388
BsaBI GATNNNNATC 1 cut(s) 509
BsaJI CCNNGG 1 cut(s) 553
BsaWI WCCGGW 1 cut(s) 606
BsaXI ACNNNNNCTCC 2 cut(s) 314, 344
Bsc4I CCNNNNNNNGG 1 cut(s) 559
Bse118I RCCGGY 1 cut(s) 606
Bse8I GATNNNNATC 1 cut(s) 509
BseBI CCWGG 1 cut(s) 402
BseDI CCNNGG 1 cut(s) 553
BseGI GGATG 1 cut(s) 463
BseJI GATNNNNATC 1 cut(s) 509
BseLI CCNNNNNNNGG 1 cut(s) 559
BseSI GKGCMC 1 cut(s) 40
BseXI GCAGC 2 cut(s) 91, 373
BshFI GGCC 1 cut(s) 519
BshNI GGYRCC 1 cut(s) 37
BshTI ACCGGT 1 cut(s) 606
BsiHKCI CYCGRG 1 cut(s) 55
BsiSI CCGG 3 cut(s) 387, 520, 607
BslI CCNNNNNNNGG 1 cut(s) 559
BsmI GAATGC 1 cut(s) 106
BsnI GGCC 1 cut(s) 519
BsoBI CYCGRG 1 cut(s) 55
Bsp1286I GDGCHC 1 cut(s) 40
Bsp143I GATC 3 cut(s) 90, 346, 504
BspACI CCGC 1 cut(s) 221
BspANI GGCC 1 cut(s) 519
BspLI GGNNCC 3 cut(s) 39, 426, 551
BspMAI CTGCAG 1 cut(s) 121
BspPI GGATC 1 cut(s) 499
BspT107I GGYRCC 1 cut(s) 37
BsrFI RCCGGY 1 cut(s) 606
BssAI RCCGGY 1 cut(s) 606
BssECI CCNNGG 1 cut(s) 553
BssMI GATC 3 cut(s) 90, 346, 504
BssSI CACGAG 1 cut(s) 108
Bst2BI CACGAG 1 cut(s) 108
Bst2UI CCWGG 1 cut(s) 402
BstDEI CTNAG 1 cut(s) 476
BstEII GGTNACC 1 cut(s) 602
BstF5I GGATG 1 cut(s) 463
BstKTI GATC 3 cut(s) 93, 349, 507
BstMBI GATC 3 cut(s) 90, 346, 504
BstMWI GCNNNNNNNGC 1 cut(s) 248
BstNI CCWGG 1 cut(s) 402
BstPI GGTNACC 1 cut(s) 602
BstSCI CCNGG 2 cut(s) 386, 400
BstSFI CTRYAG 1 cut(s) 117
BstSLI GKGCMC 1 cut(s) 40
BstV1I GCAGC 2 cut(s) 91, 373
BstV2I GAAGAC 1 cut(s) 87
BstX2I RGATCY 1 cut(s) 504
BstYI RGATCY 1 cut(s) 504
BsuRI GGCC 1 cut(s) 519
BtsCI GGATG 1 cut(s) 463
BtsI GCAGTG 2 cut(s) 189, 271
BtsIMutI CAGTG 2 cut(s) 189, 271
Cfr10I RCCGGY 1 cut(s) 606
Cfr13I GGNCC 1 cut(s) 425
CsiI ACCWGGT 1 cut(s) 400
Csp6I GTAC 2 cut(s) 204, 270
CspAI ACCGGT 1 cut(s) 606
CviAII CATG 3 cut(s) 141, 151, 318
CviJI RGCY 9 cut(s) 51, 129, 242, 382, 416, 435, 475, 519, 544
CviKI_1 RGCY 9 cut(s) 51, 129, 242, 382, 416, 435, 475, 519, 544
CviQI GTAC 2 cut(s) 204, 270
DdeI CTNAG 1 cut(s) 476
DpnI GATC 3 cut(s) 92, 348, 506
DpnII GATC 3 cut(s) 90, 346, 504
EaeI YGGCCR 1 cut(s) 517
Eco47I GGWCC 1 cut(s) 425
Eco88I CYCGRG 1 cut(s) 55
Eco91I GGTNACC 1 cut(s) 602
EcoO109I RGGNCCY 1 cut(s) 425
EcoO65I GGTNACC 1 cut(s) 602
EcoRII CCWGG 1 cut(s) 400
FaeI CATG 3 cut(s) 144, 154, 321
FaiI YATR 7 cut(s) 142, 152, 213, 319, 422, 591, 599
FalI AAGNNNNNCTT 2 cut(s) 516, 548
FatI CATG 3 cut(s) 140, 150, 317
Fnu4HI GCNGC 2 cut(s) 105, 362
FokI GGATG 1 cut(s) 470
Fsp4HI GCNGC 2 cut(s) 105, 362
FspBI CTAG 3 cut(s) 147, 201, 236
GluI GCNGC 2 cut(s) 105, 362
HaeIII GGCC 1 cut(s) 519
HapII CCGG 3 cut(s) 387, 520, 607
Hin1II CATG 3 cut(s) 144, 154, 321
HindIII AAGCTT 1 cut(s) 380
HinfI GANTC 3 cut(s) 5, 113, 180
HpaII CCGG 3 cut(s) 387, 520, 607
HphI GGTGA 2 cut(s) 63, 416
Hpy188I TCNGA 1 cut(s) 351
Hpy188III TCNNGA 4 cut(s) 17, 57, 110, 294
HpyAV CCTTC 2 cut(s) 438, 465
HpyCH4IV ACGT 1 cut(s) 255
HpyCH4V TGCA 3 cut(s) 119, 290, 376
HpyF10VI GCNNNNNNNGC 1 cut(s) 248
HpyF3I CTNAG 1 cut(s) 476
HpySE526I ACGT 1 cut(s) 255
Hsp92II CATG 3 cut(s) 144, 154, 321
Kzo9I GATC 3 cut(s) 90, 346, 504
LmnI GCTCC 1 cut(s) 358
LpnPI CCDG 8 cut(s) 30, 87, 387, 400, 414, 417, 453, 533
Lsp1109I GCAGC 2 cut(s) 91, 373
LweI GCATC 2 cut(s) 299, 448
MabI ACCWGGT 1 cut(s) 400
MaeI CTAG 3 cut(s) 147, 201, 236
MaeII ACGT 1 cut(s) 255
MaeIII GTNAC 2 cut(s) 231, 602
MalI GATC 3 cut(s) 92, 348, 506
MboI GATC 3 cut(s) 90, 346, 504
MboII GAAGA 3 cut(s) 3, 92, 514
MflI RGATCY 1 cut(s) 504
MhlI GDGCHC 1 cut(s) 40
MluCI AATT 2 cut(s) 285, 564
MlyI GAGTC 1 cut(s) 14
MmeI TCCRAC 1 cut(s) 316
MnlI CCTC 6 cut(s) 64, 316, 400, 491, 562, 563
MseI TTAA 1 cut(s) 258
MspI CCGG 3 cut(s) 387, 520, 607
MspR9I CCNGG 2 cut(s) 388, 402
Mva1269I GAATGC 1 cut(s) 106
MvaI CCWGG 1 cut(s) 402
MwoI GCNNNNNNNGC 1 cut(s) 248
NciI CCSGG 1 cut(s) 388
NdeII GATC 3 cut(s) 90, 346, 504
NlaIII CATG 3 cut(s) 144, 154, 321
NlaIV GGNNCC 3 cut(s) 39, 426, 551
PaeR7I CTCGAG 1 cut(s) 55
PctI GAATGC 1 cut(s) 106
PfeI GAWTC 2 cut(s) 113, 180
PinAI ACCGGT 1 cut(s) 606
PkrI GCNGC 2 cut(s) 106, 363
PleI GAGTC 1 cut(s) 13
PpsI GAGTC 1 cut(s) 13
PpuMI RGGWCCY 1 cut(s) 425
Psp5II RGGWCCY 1 cut(s) 425
Psp6I CCWGG 1 cut(s) 400
PspEI GGTNACC 1 cut(s) 602
PspGI CCWGG 1 cut(s) 400
PspN4I GGNNCC 3 cut(s) 39, 426, 551
PspPI GGNCC 1 cut(s) 425
PspPPI RGGWCCY 1 cut(s) 425
PstI CTGCAG 1 cut(s) 121
PsuI RGATCY 1 cut(s) 504
RsaI GTAC 2 cut(s) 205, 271
RsaNI GTAC 2 cut(s) 204, 270
SaqAI TTAA 1 cut(s) 258
SatI GCNGC 2 cut(s) 105, 362
Sau3AI GATC 3 cut(s) 90, 346, 504
Sau96I GGNCC 1 cut(s) 425
ScaI AGTACT 1 cut(s) 205
SchI GAGTC 1 cut(s) 14
ScrFI CCNGG 2 cut(s) 388, 402
SduI GDGCHC 1 cut(s) 40
SetI ASST 8 cut(s) 76, 244, 258, 307, 384, 403, 411, 555
SexAI ACCWGGT 1 cut(s) 400
SfaNI GCATC 2 cut(s) 299, 448
SfcI CTRYAG 1 cut(s) 117
Sfr274I CTCGAG 1 cut(s) 55
SinI GGWCC 1 cut(s) 425
SlaI CTCGAG 1 cut(s) 55
SmlI CTYRAG 1 cut(s) 55
SmoI CTYRAG 1 cut(s) 55
SpeI ACTAGT 1 cut(s) 200
Sse9I AATT 2 cut(s) 285, 564
SsiI CCGC 1 cut(s) 221
SspMI CTAG 3 cut(s) 147, 201, 236
StyD4I CCNGG 2 cut(s) 386, 400
TaiI ACGT 1 cut(s) 258
TaqI TCGA 2 cut(s) 56, 98
TasI AATT 2 cut(s) 285, 564
TatI WGTACW 1 cut(s) 203
TfiI GAWTC 2 cut(s) 113, 180
Tru1I TTAA 1 cut(s) 258
Tru9I TTAA 1 cut(s) 258
TscAI CASTG 2 cut(s) 196, 271
TseI GCWGC 2 cut(s) 104, 361
TspGWI ACGGA 1 cut(s) 562
TspRI CASTG 2 cut(s) 196, 271
VpaK11BI GGWCC 1 cut(s) 425
XhoI CTCGAG 1 cut(s) 55
XspI CTAG 3 cut(s) 147, 201, 236
ZrmI AGTACT 1 cut(s) 205
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.