Rh1DG154100

ABC transporter G family member

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1D
OG0000287
Physical Location & Seq
Reverse (-)
32194991 .. 32195290
300 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1DG154100.1

Sequence Viewer

Length: 300 bp
ATGACAAAACAAGAGAAAAATGACGTTGTGGAAGAGTCCCTCACCAAAATGGGTCTTCAAGATTGTGCTGAGACTCATATCGGGAACTGGCATTTGAGAGGTATAAGTAATGGAGAAAAGAGGAGACTTGGCATATGTATTGAAATATTAACACAGCCTCATGTTTTGTTGCTTGATGAACCCACTAGCGGTCTAGATAGTGCTTCATCTTTCTTTGTAATATGGGCATTGAGAAACATTGCTCAGGATGGAAGGATAGTCATTTGTTCTGTTCGCCAACCAATGATCTGGTTCTCATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
ABC2_membrane ABC_tran

Protein Analysis

99

Amino Acids

11.19

Weight (kDa)

5.85

Isoelectric Point (pI)

64.49

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
ABC_tran PF00005 5 - 63 4e-10 ABC transporter
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000287)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g20390 FvH4_1g20390 FvH4_1g20390 FvH4_1g20390 FvH4_1g20390 FvH4_1g20400 FvH4_1g20400 FvH4_1g20400 FvH4_1g20400 FvH4_1g20400 FvH4_1g20410 FvH4_1g20410 FvH4_6g39250 FvH4_6g39250
malus_domestica MD00G1036800.v1.1 MD05G1042600.v1.1 MD10G1049900.v1.1
prunus_persica Prupe.6G191500_v2.0.a1 Prupe.8G064300_v2.0.a1 Prupe.8G064300_v2.0.a1 Prupe.8G064400_v2.0.a1
pyrus_communis pycom05g03520 pycom10g03500 pycom10g03510 pycom15g28250
rosa_chinensis RchiOBHm_Chr1g0336561 RchiOBHm_Chr2g0112551 RchiOBHm_Chr2g0112561 RchiOBHm_Chr2g0112631 RchiOBHm_Chr2g0112641 RchiOBHm_Chr2g0153091 RchiOBHm_Chr2g0153111 RchiOBHm_Chr2g0153141 RchiOBHm_Chr2g0153161 RchiOBHm_Chr2g0153171
rosa_laevigata RLG00000017991 RLG00000017992 RLG00000017995 RLG00000017997 RLG00000020676 RLG00000020677 RLG00000020678 RLG00000020682
rosa_multiflora Rmu_co8208234.1_g000001 Rmu_co8218328.1_g000001 Rmu_co8425243.1_g000001 Rmu_sc0000218.1_g000037 Rmu_sc0000218.1_g000044 Rmu_sc0000218.1_g000047 Rmu_sc0000218.1_g000052 Rmu_sc0001155.1_g000011 Rmu_sc0001155.1_g000026 Rmu_sc0001155.1_g000029 Rmu_sc0001499.1_g000001 Rmu_sc0001499.1_g000040 Rmu_sc0002401.1_g000032 Rmu_sc0002401.1_g000033 Rmu_sc0004070.1_g000003 Rmu_sc0004070.1_g000004 Rmu_sc0005547.1_g000001 Rmu_sc0006062.1_g000002 Rmu_sc0009780.1_g000005 Rmu_sc0013071.1_g000001 Rmu_sc0013071.1_g000012
rosa_roxburghii Rroxscaffold_2G00095130 Rroxscaffold_2G00095140 Rroxscaffold_2G00095160 Rroxscaffold_2G00095180 Rroxscaffold_2G00095190 Rroxscaffold_2G00095200 Rroxscaffold_2G00131290 Rroxscaffold_2G00131320 Rroxscaffold_2G00131350
rosa_rugosa Rorug02G0181500 Rorug02G0181500 Rorug02G0181600 Rorug02G0181700 Rorug02G0437300 Rorug02G0437400
rosa_samantha Rh1DG154100 Rh2AG235200 Rh2AG235300 Rh2AG235400 Rh2AG235600 Rh2AG235800 Rh2AG499700 Rh2AG499800 Rh2AG500000 Rh2AG500100 Rh2AG500200 Rh2BG248500 Rh2BG248700 Rh2BG248800 Rh2BG511000 Rh2BG511200 Rh2BG511300 Rh2BG511600 Rh2CG239600 Rh2CG239700 Rh2CG239900 Rh2CG240000 Rh2CG485900 Rh2CG486000 Rh2CG486200 Rh2CG486300 Rh2CG486400 Rh2DG242500 Rh2DG242600 Rh2DG242700 Rh2DG242900 Rh2DG243100 Rh2DG522800 Rh2DG523100 Rh2DG523200 Rh2DG523500 Rh2DG523600 Rh5DG200200
rosa_wichuraiana Rw2G018200 Rw2G018210 Rw2G018230 Rw2G018240 Rw2G041010 Rw2G041020 Rw2G041030 Rw2G041050

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 189
AfiI CCNNNNNNNGG 1 cut(s) 188
AgsI TTSAA 2 cut(s) 59, 143
Alw26I GTCTC 2 cut(s) 65, 118
AsuHPI GGTGA 1 cut(s) 34
BbsI GAAGAC 1 cut(s) 47
BccI CCATC 1 cut(s) 242
BcoDI GTCTC 2 cut(s) 65, 118
BfaI CTAG 2 cut(s) 186, 194
BpiI GAAGAC 1 cut(s) 47
Bpu10I CCTNAGC 1 cut(s) 243
Bsc4I CCNNNNNNNGG 1 cut(s) 188
Bse1I ACTGG 1 cut(s) 92
Bse3DI GCAATG 1 cut(s) 237
BseGI GGATG 1 cut(s) 253
BseLI CCNNNNNNNGG 1 cut(s) 188
BseMI GCAATG 1 cut(s) 237
BseMII CTCAG 2 cut(s) 60, 257
BseNI ACTGG 1 cut(s) 92
BseRI GAGGAG 1 cut(s) 136
BslFI GGGAC 1 cut(s) 22
BslI CCNNNNNNNGG 1 cut(s) 188
BsmAI GTCTC 2 cut(s) 65, 118
BsmFI GGGAC 1 cut(s) 22
Bsp143I GATC 1 cut(s) 285
BspACI CCGC 1 cut(s) 189
BspCNI CTCAG 2 cut(s) 61, 256
BsrDI GCAATG 1 cut(s) 237
BsrI ACTGG 1 cut(s) 92
BssMI GATC 1 cut(s) 285
Bst6I CTCTTC 1 cut(s) 27
BstDEI CTNAG 2 cut(s) 69, 243
BstF5I GGATG 1 cut(s) 253
BstKTI GATC 1 cut(s) 288
BstMAI GTCTC 2 cut(s) 65, 118
BstMBI GATC 1 cut(s) 285
BstV2I GAAGAC 1 cut(s) 47
BstXI CCANNNNNNTGG 1 cut(s) 288
BtsCI GGATG 1 cut(s) 253
CviAII CATG 1 cut(s) 161
CviJI RGCY 1 cut(s) 157
CviKI_1 RGCY 1 cut(s) 157
DdeI CTNAG 2 cut(s) 69, 243
DpnI GATC 1 cut(s) 287
DpnII GATC 1 cut(s) 285
Eam1104I CTCTTC 1 cut(s) 27
EarI CTCTTC 1 cut(s) 27
FaeI CATG 1 cut(s) 164
FaiI YATR 7 cut(s) 78, 104, 134, 136, 162, 223, 298
FaqI GGGAC 1 cut(s) 22
FatI CATG 1 cut(s) 160
FauNDI CATATG 1 cut(s) 134
FokI GGATG 1 cut(s) 260
FspBI CTAG 2 cut(s) 186, 194
Hin1II CATG 1 cut(s) 164
HinfI GANTC 2 cut(s) 35, 73
HphI GGTGA 1 cut(s) 34
Hpy188III TCNNGA 4 cut(s) 59, 82, 194, 245
HpyAV CCTTC 1 cut(s) 246
HpyCH4IV ACGT 1 cut(s) 24
HpyF3I CTNAG 2 cut(s) 69, 243
HpySE526I ACGT 1 cut(s) 24
Hsp92II CATG 1 cut(s) 164
Kzo9I GATC 1 cut(s) 285
LpnPI CCDG 3 cut(s) 73, 230, 274
MaeI CTAG 2 cut(s) 186, 194
MaeII ACGT 1 cut(s) 24
MalI GATC 1 cut(s) 287
MboI GATC 1 cut(s) 285
MboII GAAGA 2 cut(s) 44, 47
MlyI GAGTC 2 cut(s) 44, 67
MnlI CCTC 4 cut(s) 50, 92, 114, 168
MseI TTAA 1 cut(s) 149
MslI CAYNNNNRTG 1 cut(s) 47
NdeI CATATG 1 cut(s) 134
NdeII GATC 1 cut(s) 285
NlaIII CATG 1 cut(s) 164
PleI GAGTC 2 cut(s) 43, 67
PpsI GAGTC 2 cut(s) 43, 67
RseI CAYNNNNRTG 1 cut(s) 47
SaqAI TTAA 1 cut(s) 149
Sau3AI GATC 1 cut(s) 285
SchI GAGTC 2 cut(s) 44, 67
SetI ASST 2 cut(s) 27, 103
SmiMI CAYNNNNRTG 1 cut(s) 47
SsiI CCGC 1 cut(s) 189
SspI AATATT 1 cut(s) 147
SspMI CTAG 2 cut(s) 186, 194
TaiI ACGT 1 cut(s) 27
Tru1I TTAA 1 cut(s) 149
Tru9I TTAA 1 cut(s) 149
TspDTI ATGAA 2 cut(s) 192, 195
XbaI TCTAGA 1 cut(s) 193
XspI CTAG 2 cut(s) 186, 194
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.