Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000002

Orthogroup ID

OG0000287

Physical Location & Seq

Genomic Coordinates Reverse (-)

16441379 .. 16447048

Gene Structure 5670 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_2G00095130.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 681 bp

ATGGCCATTGGTGGGTTTCCTTCCTTTGTGGAAGACATGAAGCTGGTTCGGATTGCAAGGGATTATGTTGTTATGCGGCGGTTCTTCCGGCTACCAAATGATCTTCCGGATCTTGTGTGGAAATACCCATTGTACCATATTGCCTTCCACAAGTATCCATTCCGGGGAATGTTTAAGAATGAATTTGAAGGAACAACGTTTCCGAGTAATGATCAACTTAGAATCGGTAACTCTAAGTGGCTTAGTGGCGACAGCATTTTGAGAGATATATGGCAGGTGGAAATGGGTTACTCTAAATGGGTTGACCTTGGTGTCTTGCTAGGAATGATAGTTCTGTATCGAGCTTTGTTCTTGGTTATCATCAAGATCACCGAGAAAAGGAAGACTATTACCTTAGCTCTTACGCCCATGGCTCCGAAGCAAAGCATGCAAGTATTGGCTGGAGGGGTGGTAAGATGTTTCGACCTAGCGAGTTCTACTAGGGTTGGGAGAGCGCAACCCTCGAGCTTGGCTTCTCTGTACCTCTTTCCGTCCCGTATGGAGTATAACTACGAGGGACTTCTTTGGGGGCTCCTAAATCAAGACCGGCTATCACCGCGTCCCCTATGTCGCGGACTCTTTCGTGCCATCTTTGTCGGCGAGCATGGTAGCTCGTGTCCTACCGCATTTTCTACCTCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0001101 GO:0003002 GO:0003006 GO:0003674 GO:0003824 GO:0005215 GO:0005319 GO:0005342 GO:0005488 GO:0005515 GO:0005575 GO:0005623 GO:0005886 GO:0006810 GO:0006811 GO:0006820 GO:0006869 GO:0006950 GO:0006970 GO:0007275 GO:0007389 GO:0008028 GO:0008150 GO:0008509 GO:0008514 GO:0009611 GO:0009628 GO:0009651 GO:0009653 GO:0009719 GO:0009725 GO:0009737 GO:0009790 GO:0009791 GO:0009793 GO:0009897 GO:0009965 GO:0009986 GO:0010016 GO:0010033 GO:0010051 GO:0010154 GO:0010222 GO:0010588 GO:0010876 GO:0015075 GO:0015245 GO:0015318 GO:0015399 GO:0015405 GO:0015711 GO:0015718 GO:0015849 GO:0015908 GO:0016020 GO:0016021 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0022414 GO:0022804 GO:0022857 GO:0031224 GO:0032501 GO:0032502 GO:0033036 GO:0033993 GO:0034220 GO:0042221 GO:0042623 GO:0042626 GO:0042802 GO:0042803 GO:0043492 GO:0044425 GO:0044459 GO:0044464 GO:0046942 GO:0046943 GO:0046983 GO:0048316 GO:0048366 GO:0048367 GO:0048598 GO:0048608 GO:0048731 GO:0048825 GO:0048826 GO:0048827 GO:0048856 GO:0050896 GO:0051179 GO:0051234 GO:0055085 GO:0061458 GO:0071702 GO:0071944 GO:0080051 GO:0090698 GO:0097305 GO:0098552 GO:0098656 GO:0099402 GO:1901700 GO:1903825 GO:1905039 GO:1905392

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

ABC2_membrane ABC_tran

Protein Analysis

226

Amino Acids

25.83

Weight (kDa)

9.71

Isoelectric Point (pI)

39.61

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000287)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g20390 FvH4_1g20390 FvH4_1g20390 FvH4_1g20390 FvH4_1g20390 FvH4_1g20400 FvH4_1g20400 FvH4_1g20400 FvH4_1g20400 FvH4_1g20400 FvH4_1g20410 FvH4_1g20410 FvH4_6g39250 FvH4_6g39250
malus_domestica	MD00G1036800.v1.1 MD05G1042600.v1.1 MD10G1049900.v1.1
prunus_persica	Prupe.6G191500_v2.0.a1 Prupe.8G064300_v2.0.a1 Prupe.8G064300_v2.0.a1 Prupe.8G064400_v2.0.a1
pyrus_communis	pycom05g03520 pycom10g03500 pycom10g03510 pycom15g28250
rosa_chinensis	RchiOBHm_Chr1g0336561 RchiOBHm_Chr2g0112551 RchiOBHm_Chr2g0112561 RchiOBHm_Chr2g0112631 RchiOBHm_Chr2g0112641 RchiOBHm_Chr2g0153091 RchiOBHm_Chr2g0153111 RchiOBHm_Chr2g0153141 RchiOBHm_Chr2g0153161 RchiOBHm_Chr2g0153171
rosa_laevigata	RLG00000017991 RLG00000017992 RLG00000017995 RLG00000017997 RLG00000020676 RLG00000020677 RLG00000020678 RLG00000020682
rosa_multiflora	Rmu_co8208234.1_g000001 Rmu_co8218328.1_g000001 Rmu_co8425243.1_g000001 Rmu_sc0000218.1_g000037 Rmu_sc0000218.1_g000044 Rmu_sc0000218.1_g000047 Rmu_sc0000218.1_g000052 Rmu_sc0001155.1_g000011 Rmu_sc0001155.1_g000026 Rmu_sc0001155.1_g000029 Rmu_sc0001499.1_g000001 Rmu_sc0001499.1_g000040 Rmu_sc0002401.1_g000032 Rmu_sc0002401.1_g000033 Rmu_sc0004070.1_g000003 Rmu_sc0004070.1_g000004 Rmu_sc0005547.1_g000001 Rmu_sc0006062.1_g000002 Rmu_sc0009780.1_g000005 Rmu_sc0013071.1_g000001 Rmu_sc0013071.1_g000012
rosa_roxburghii	Rroxscaffold_2G00095130 Rroxscaffold_2G00095140 Rroxscaffold_2G00095160 Rroxscaffold_2G00095180 Rroxscaffold_2G00095190 Rroxscaffold_2G00095200 Rroxscaffold_2G00131290 Rroxscaffold_2G00131320 Rroxscaffold_2G00131350
rosa_rugosa	Rorug02G0181500 Rorug02G0181500 Rorug02G0181600 Rorug02G0181700 Rorug02G0437300 Rorug02G0437400
rosa_samantha	Rh1DG154100 Rh2AG235200 Rh2AG235300 Rh2AG235400 Rh2AG235600 Rh2AG235800 Rh2AG499700 Rh2AG499800 Rh2AG500000 Rh2AG500100 Rh2AG500200 Rh2BG248500 Rh2BG248700 Rh2BG248800 Rh2BG511000 Rh2BG511200 Rh2BG511300 Rh2BG511600 Rh2CG239600 Rh2CG239700 Rh2CG239900 Rh2CG240000 Rh2CG485900 Rh2CG486000 Rh2CG486200 Rh2CG486300 Rh2CG486400 Rh2DG242500 Rh2DG242600 Rh2DG242700 Rh2DG242900 Rh2DG243100 Rh2DG522800 Rh2DG523100 Rh2DG523200 Rh2DG523500 Rh2DG523600 Rh5DG200200
rosa_wichuraiana	Rw2G018200 Rw2G018210 Rw2G018230 Rw2G018240 Rw2G041010 Rw2G041020 Rw2G041030 Rw2G041050

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	265
AasI	GACNNNNNNGTC	1 cut(s)	311
Acc36I	ACCTGC	1 cut(s)	265
AccII	CGCG	2 cut(s)	598, 612
AccIII	TCCGGA	1 cut(s)	106
AciI	CCGC	5 cut(s)	76, 79, 596, 612, 663
AclI	AACGTT	1 cut(s)	197
AclWI	GGATC	1 cut(s)	117
AcoI	YGGCCR	1 cut(s)	3
AcsI	RAATTY	1 cut(s)	182
AfaI	GTAC	2 cut(s)	134, 521
AfiI	CCNNNNNNNGG	3 cut(s)	12, 164, 378
AgsI	TTSAA	1 cut(s)	188
AloI	GAACNNNNNNTCC	4 cut(s)	184, 216, 315, 347
AluBI	AGCT	5 cut(s)	43, 344, 398, 507, 651
AluI	AGCT	5 cut(s)	43, 344, 398, 507, 651
AlwI	GGATC	1 cut(s)	117
Ama87I	CYCGRG	1 cut(s)	502
Aor13HI	TCCGGA	1 cut(s)	106
AoxI	GGCC	1 cut(s)	3
ApoI	RAATTY	1 cut(s)	182
AspLEI	GCGC	1 cut(s)	496
AsuC2I	CCSGG	1 cut(s)	164
AsuHPI	GGTGA	2 cut(s)	361, 585
AvaI	CYCGRG	1 cut(s)	502
BalI	TGGCCA	1 cut(s)	5
BanII	GRGCYC	1 cut(s)	573
BauI	CACGAG	1 cut(s)	652
BbsI	GAAGAC	2 cut(s)	39, 389
BccI	CCATC	1 cut(s)	635
BciVI	GTATCC	1 cut(s)	165
BclI	TGATCA	1 cut(s)	211
BcnI	CCSGG	1 cut(s)	164
BfaI	CTAG	3 cut(s)	320, 467, 480
BfuAI	ACCTGC	1 cut(s)	265
BfuI	GTATCC	1 cut(s)	165
BisI	GCNGC	1 cut(s)	77
BlsI	GCNGC	1 cut(s)	78
Bme1390I	CCNGG	1 cut(s)	164
BmeT110I	CYCGRG	1 cut(s)	502
BmiI	GGNNCC	2 cut(s)	414, 572
BmrFI	CCNGG	1 cut(s)	164
BpiI	GAAGAC	2 cut(s)	39, 389
BpmI	CTGGAG	1 cut(s)	462
Bpu10I	CCTNAGC	1 cut(s)	394
BpuMI	CCSGG	1 cut(s)	164
BsaJI	CCNNGG	3 cut(s)	163, 307, 408
BsaWI	WCCGGW	1 cut(s)	106
BsaXI	ACNNNNNCTCC	2 cut(s)	435, 465
Bsc4I	CCNNNNNNNGG	3 cut(s)	12, 164, 378
Bse118I	RCCGGY	1 cut(s)	585
BseAI	TCCGGA	1 cut(s)	106
BseDI	CCNNGG	3 cut(s)	163, 307, 408
BseLI	CCNNNNNNNGG	3 cut(s)	12, 164, 378
Bsh1236I	CGCG	2 cut(s)	598, 612
BshFI	GGCC	1 cut(s)	5
BsiHKCI	CYCGRG	1 cut(s)	502
BsiSI	CCGG	4 cut(s)	88, 107, 163, 586
BslFI	GGGAC	3 cut(s)	517, 570, 585
BslI	CCNNNNNNNGG	3 cut(s)	12, 164, 378
BsmFI	GGGAC	3 cut(s)	517, 570, 585
BsnI	GGCC	1 cut(s)	5
BsoBI	CYCGRG	1 cut(s)	502
Bsp1286I	GDGCHC	1 cut(s)	573
Bsp13I	TCCGGA	1 cut(s)	106
Bsp143I	GATC	4 cut(s)	100, 109, 211, 366
Bsp19I	CCATGG	1 cut(s)	408
BspACI	CCGC	5 cut(s)	76, 79, 596, 612, 663
BspANI	GGCC	1 cut(s)	5
BspEI	TCCGGA	1 cut(s)	106
BspFNI	CGCG	2 cut(s)	598, 612
BspLI	GGNNCC	2 cut(s)	414, 572
BspMI	ACCTGC	1 cut(s)	265
BspPI	GGATC	1 cut(s)	117
BsrFI	RCCGGY	1 cut(s)	585
BssAI	RCCGGY	1 cut(s)	585
BssECI	CCNNGG	3 cut(s)	163, 307, 408
BssMI	GATC	4 cut(s)	100, 109, 211, 366
BssSI	CACGAG	1 cut(s)	652
BssT1I	CCWWGG	2 cut(s)	307, 408
Bst2BI	CACGAG	1 cut(s)	652
BstAPI	GCANNNNNTGC	1 cut(s)	427
BstC8I	GCNNGC	2 cut(s)	428, 641
BstDEI	CTNAG	4 cut(s)	218, 234, 242, 394
BstDSI	CCRYGG	1 cut(s)	408
BstFNI	CGCG	2 cut(s)	598, 612
BstHHI	GCGC	1 cut(s)	496
BstKTI	GATC	4 cut(s)	103, 112, 214, 369
BstMBI	GATC	4 cut(s)	100, 109, 211, 366
BstMWI	GCNNNNNNNGC	2 cut(s)	427, 595
BstNSI	RCATGY	1 cut(s)	430
BstSCI	CCNGG	1 cut(s)	162
BstUI	CGCG	2 cut(s)	598, 612
BstV2I	GAAGAC	2 cut(s)	39, 389
BstX2I	RGATCY	1 cut(s)	109
BstYI	RGATCY	1 cut(s)	109
BsuI	GTATCC	1 cut(s)	165
BsuRI	GGCC	1 cut(s)	5
BtgI	CCRYGG	1 cut(s)	408
BveI	ACCTGC	1 cut(s)	265
Cac8I	GCNNGC	2 cut(s)	428, 641
CfoI	GCGC	1 cut(s)	496
Cfr10I	RCCGGY	1 cut(s)	585
CseI	GACGC	1 cut(s)	587
Csp6I	GTAC	2 cut(s)	133, 520
CviAII	CATG	4 cut(s)	37, 409, 427, 644
CviQI	GTAC	2 cut(s)	133, 520
DdeI	CTNAG	4 cut(s)	218, 234, 242, 394
DpnI	GATC	4 cut(s)	102, 111, 213, 368
DpnII	GATC	4 cut(s)	100, 109, 211, 366
DrdI	GACNNNNNNGTC	1 cut(s)	311
DseDI	GACNNNNNNGTC	1 cut(s)	311
EaeI	YGGCCR	1 cut(s)	3
Eco130I	CCWWGG	2 cut(s)	307, 408
Eco24I	GRGCYC	1 cut(s)	573
Eco88I	CYCGRG	1 cut(s)	502
EcoT14I	CCWWGG	2 cut(s)	307, 408
EcoT38I	GRGCYC	1 cut(s)	573
ErhI	CCWWGG	2 cut(s)	307, 408
FaeI	CATG	4 cut(s)	40, 412, 430, 647
FaqI	GGGAC	3 cut(s)	517, 570, 585
FatI	CATG	4 cut(s)	36, 408, 426, 643
FbaI	TGATCA	1 cut(s)	211
Fnu4HI	GCNGC	1 cut(s)	77
FriOI	GRGCYC	1 cut(s)	573
Fsp4HI	GCNGC	1 cut(s)	77
FspBI	CTAG	3 cut(s)	320, 467, 480
GlaI	GCGC	1 cut(s)	495
GluI	GCNGC	1 cut(s)	77
GsuI	CTGGAG	1 cut(s)	462
HaeIII	GGCC	1 cut(s)	5
HapII	CCGG	4 cut(s)	88, 107, 163, 586
HgaI	GACGC	1 cut(s)	587
HhaI	GCGC	1 cut(s)	496
Hin1II	CATG	4 cut(s)	40, 412, 430, 647
Hin6I	GCGC	1 cut(s)	494
HinP1I	GCGC	1 cut(s)	494
HincII	GTYRAC	1 cut(s)	304
HindII	GTYRAC	1 cut(s)	304
HinfI	GANTC	2 cut(s)	222, 615
HpaII	CCGG	4 cut(s)	88, 107, 163, 586
HphI	GGTGA	2 cut(s)	361, 585
Hpy166II	GTNNAC	1 cut(s)	304
Hpy188I	TCNGA	3 cut(s)	51, 204, 417
Hpy188III	TCNNGA	4 cut(s)	107, 364, 581, 678
Hpy8I	GTNNAC	1 cut(s)	304
HpyAV	CCTTC	3 cut(s)	30, 154, 182
HpyCH4IV	ACGT	1 cut(s)	197
HpyCH4V	TGCA	2 cut(s)	56, 430
HpyF10VI	GCNNNNNNNGC	2 cut(s)	427, 595
HpyF3I	CTNAG	4 cut(s)	218, 234, 242, 394
HpySE526I	ACGT	1 cut(s)	197
Hsp92II	CATG	4 cut(s)	40, 412, 430, 647
HspAI	GCGC	1 cut(s)	494
Kpn2I	TCCGGA	1 cut(s)	106
Ksp22I	TGATCA	1 cut(s)	211
Kzo9I	GATC	4 cut(s)	100, 109, 211, 366
LmnI	GCTCC	2 cut(s)	418, 576
LpnPI	CCDG	7 cut(s)	29, 101, 120, 176, 260, 426, 599
MaeI	CTAG	3 cut(s)	320, 467, 480
MaeII	ACGT	1 cut(s)	197
MaeIII	GTNAC	2 cut(s)	227, 287
MalI	GATC	4 cut(s)	102, 111, 213, 368
MboI	GATC	4 cut(s)	100, 109, 211, 366
MboII	GAAGA	4 cut(s)	44, 76, 95, 394
MflI	RGATCY	1 cut(s)	109
MhlI	GDGCHC	1 cut(s)	573
MlsI	TGGCCA	1 cut(s)	5
MluCI	AATT	1 cut(s)	182
MluNI	TGGCCA	1 cut(s)	5
MlyI	GAGTC	1 cut(s)	609
MnlI	CCTC	4 cut(s)	437, 511, 533, 547
Mox20I	TGGCCA	1 cut(s)	5
MroI	TCCGGA	1 cut(s)	106
MscI	TGGCCA	1 cut(s)	5
MseI	TTAA	1 cut(s)	174
Msp20I	TGGCCA	1 cut(s)	5
MspI	CCGG	4 cut(s)	88, 107, 163, 586
MspR9I	CCNGG	1 cut(s)	164
MvnI	CGCG	2 cut(s)	598, 612
MwoI	GCNNNNNNNGC	2 cut(s)	427, 595
NciI	CCSGG	1 cut(s)	164
NcoI	CCATGG	1 cut(s)	408
NdeII	GATC	4 cut(s)	100, 109, 211, 366
NlaIII	CATG	4 cut(s)	40, 412, 430, 647
NlaIV	GGNNCC	2 cut(s)	414, 572
NspI	RCATGY	1 cut(s)	430
PaeI	GCATGC	1 cut(s)	430
PaeR7I	CTCGAG	1 cut(s)	502
PaqCI	CACCTGC	1 cut(s)	265
PfeI	GAWTC	1 cut(s)	222
PkrI	GCNGC	1 cut(s)	78
PleI	GAGTC	1 cut(s)	609
PpsI	GAGTC	1 cut(s)	609
Psp1406I	AACGTT	1 cut(s)	197
PspN4I	GGNNCC	2 cut(s)	414, 572
PspXI	VCTCGAGB	1 cut(s)	502
PsuI	RGATCY	1 cut(s)	109
RsaI	GTAC	2 cut(s)	134, 521
RsaNI	GTAC	2 cut(s)	133, 520
SaqAI	TTAA	1 cut(s)	174
SatI	GCNGC	1 cut(s)	77
Sau3AI	GATC	4 cut(s)	100, 109, 211, 366
SchI	GAGTC	1 cut(s)	609
ScrFI	CCNGG	1 cut(s)	164
SduI	GDGCHC	1 cut(s)	573
Sfr274I	CTCGAG	1 cut(s)	502
SlaI	CTCGAG	1 cut(s)	502
SmlI	CTYRAG	1 cut(s)	502
SmoI	CTYRAG	1 cut(s)	502
SphI	GCATGC	1 cut(s)	430
Sse9I	AATT	1 cut(s)	182
SsiI	CCGC	5 cut(s)	76, 79, 596, 612, 663
SspMI	CTAG	3 cut(s)	320, 467, 480
StyD4I	CCNGG	1 cut(s)	162
StyI	CCWWGG	2 cut(s)	307, 408
TaiI	ACGT	1 cut(s)	200
TaqI	TCGA	3 cut(s)	340, 462, 503
TasI	AATT	1 cut(s)	182
TauI	GCSGC	1 cut(s)	79
TfiI	GAWTC	1 cut(s)	222
Tru1I	TTAA	1 cut(s)	174
Tru9I	TTAA	1 cut(s)	174
TspDTI	ATGAA	2 cut(s)	53, 195
TspGWI	ACGGA	1 cut(s)	519
XapI	RAATTY	1 cut(s)	182
XceI	RCATGY	1 cut(s)	430
XhoI	CTCGAG	1 cut(s)	502
XspI	CTAG	3 cut(s)	320, 467, 480

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.