Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2C

Orthogroup ID

OG0000287

Physical Location & Seq

Genomic Coordinates Forward (+)

65253917 .. 65255666

Gene Structure 1750 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2CG486300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 600 bp

ATGGCTTCAATTACATCTCATTCTAATGTTAAGTTTATTAGTGCAATTCATGAAAGTGAAAATGGTTACCATCCCAGTAGTCCCACAGCAGTTGCGGAGGTTGAAACAGTTGCTAAAGGAGATGCCGCAGTGAAGGAAGACTCCATTCAAAACCGAAACCATATAAAGGTTCCACTAATCGAAAATGATGAGGGTCTTTTCTTGACATGGGAAGATTTGTGGGTGAGAGTAGCCTCAAATTTAAATGAGCGAGAAGGAGAAAAGCATAGTAGTGATGGAAGAAGCTGCAGATCAATCCTCCGAGGGGTAACTGGTTATGCCAAACCAGGGCAACTCTTGGCTCTAATGGGTCCTTCTGGTTGTGGCAAATCTACTCTTCTTGATGCTTTAGCAGGTAGATTGAGTTCAAACACAAGGCAAACAGGGGATATCCGTATAAATGGACATAAACAAGCACTAGCTTATGGAACTTCGGCATATGTAACACAAGATGACACTCTAATGACCACATTAACGGTGAAAGGAGCTGTATACTACTCTGCTCAACTGCAGCTACCAGAGTCAATGTCTAAGTCAAAGAAGAAAGAGAGAGACAAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0001101 GO:0003002 GO:0003006 GO:0003674 GO:0003824 GO:0005215 GO:0005319 GO:0005342 GO:0005488 GO:0005515 GO:0005575 GO:0005623 GO:0005886 GO:0006810 GO:0006811 GO:0006820 GO:0006869 GO:0006950 GO:0006970 GO:0007275 GO:0007389 GO:0008028 GO:0008150 GO:0008509 GO:0008514 GO:0009611 GO:0009628 GO:0009651 GO:0009653 GO:0009719 GO:0009725 GO:0009737 GO:0009790 GO:0009791 GO:0009793 GO:0009897 GO:0009965 GO:0009986 GO:0010016 GO:0010033 GO:0010051 GO:0010154 GO:0010222 GO:0010588 GO:0010876 GO:0015075 GO:0015245 GO:0015318 GO:0015399 GO:0015405 GO:0015711 GO:0015718 GO:0015849 GO:0015908 GO:0016020 GO:0016021 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0022414 GO:0022804 GO:0022857 GO:0031224 GO:0032501 GO:0032502 GO:0033036 GO:0033993 GO:0034220 GO:0042221 GO:0042623 GO:0042626 GO:0042802 GO:0042803 GO:0043492 GO:0044425 GO:0044459 GO:0044464 GO:0046942 GO:0046943 GO:0046983 GO:0048316 GO:0048366 GO:0048367 GO:0048598 GO:0048608 GO:0048731 GO:0048825 GO:0048826 GO:0048827 GO:0048856 GO:0050896 GO:0051179 GO:0051234 GO:0055085 GO:0061458 GO:0071702 GO:0071944 GO:0080051 GO:0090698 GO:0097305 GO:0098552 GO:0098656 GO:0099402 GO:1901700 GO:1903825 GO:1905039 GO:1905392

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

ABC2_membrane ABC_tran

Protein Analysis

199

Amino Acids

21.61

Weight (kDa)

7.79

Isoelectric Point (pI)

38.72

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ABC_tran	PF00005	100 - 180	1.7e-12	ABC transporter

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000287)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g20390 FvH4_1g20390 FvH4_1g20390 FvH4_1g20390 FvH4_1g20390 FvH4_1g20400 FvH4_1g20400 FvH4_1g20400 FvH4_1g20400 FvH4_1g20400 FvH4_1g20410 FvH4_1g20410 FvH4_6g39250 FvH4_6g39250
malus_domestica	MD00G1036800.v1.1 MD05G1042600.v1.1 MD10G1049900.v1.1
prunus_persica	Prupe.6G191500_v2.0.a1 Prupe.8G064300_v2.0.a1 Prupe.8G064300_v2.0.a1 Prupe.8G064400_v2.0.a1
pyrus_communis	pycom05g03520 pycom10g03500 pycom10g03510 pycom15g28250
rosa_chinensis	RchiOBHm_Chr1g0336561 RchiOBHm_Chr2g0112551 RchiOBHm_Chr2g0112561 RchiOBHm_Chr2g0112631 RchiOBHm_Chr2g0112641 RchiOBHm_Chr2g0153091 RchiOBHm_Chr2g0153111 RchiOBHm_Chr2g0153141 RchiOBHm_Chr2g0153161 RchiOBHm_Chr2g0153171
rosa_laevigata	RLG00000017991 RLG00000017992 RLG00000017995 RLG00000017997 RLG00000020676 RLG00000020677 RLG00000020678 RLG00000020682
rosa_multiflora	Rmu_co8208234.1_g000001 Rmu_co8218328.1_g000001 Rmu_co8425243.1_g000001 Rmu_sc0000218.1_g000037 Rmu_sc0000218.1_g000044 Rmu_sc0000218.1_g000047 Rmu_sc0000218.1_g000052 Rmu_sc0001155.1_g000011 Rmu_sc0001155.1_g000026 Rmu_sc0001155.1_g000029 Rmu_sc0001499.1_g000001 Rmu_sc0001499.1_g000040 Rmu_sc0002401.1_g000032 Rmu_sc0002401.1_g000033 Rmu_sc0004070.1_g000003 Rmu_sc0004070.1_g000004 Rmu_sc0005547.1_g000001 Rmu_sc0006062.1_g000002 Rmu_sc0009780.1_g000005 Rmu_sc0013071.1_g000001 Rmu_sc0013071.1_g000012
rosa_roxburghii	Rroxscaffold_2G00095130 Rroxscaffold_2G00095140 Rroxscaffold_2G00095160 Rroxscaffold_2G00095180 Rroxscaffold_2G00095190 Rroxscaffold_2G00095200 Rroxscaffold_2G00131290 Rroxscaffold_2G00131320 Rroxscaffold_2G00131350
rosa_rugosa	Rorug02G0181500 Rorug02G0181500 Rorug02G0181600 Rorug02G0181700 Rorug02G0437300 Rorug02G0437400
rosa_samantha	Rh1DG154100 Rh2AG235200 Rh2AG235300 Rh2AG235400 Rh2AG235600 Rh2AG235800 Rh2AG499700 Rh2AG499800 Rh2AG500000 Rh2AG500100 Rh2AG500200 Rh2BG248500 Rh2BG248700 Rh2BG248800 Rh2BG511000 Rh2BG511200 Rh2BG511300 Rh2BG511600 Rh2CG239600 Rh2CG239700 Rh2CG239900 Rh2CG240000 Rh2CG485900 Rh2CG486000 Rh2CG486200 Rh2CG486300 Rh2CG486400 Rh2DG242500 Rh2DG242600 Rh2DG242700 Rh2DG242900 Rh2DG243100 Rh2DG522800 Rh2DG523100 Rh2DG523200 Rh2DG523500 Rh2DG523600 Rh5DG200200
rosa_wichuraiana	Rw2G018200 Rw2G018210 Rw2G018230 Rw2G018240 Rw2G041010 Rw2G041020 Rw2G041030 Rw2G041050

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	383
AccI	GTMKAC	1 cut(s)	531
AciI	CCGC	2 cut(s)	95, 126
AcsI	RAATTY	1 cut(s)	238
AfiI	CCNNNNNNNGG	3 cut(s)	166, 304, 327
AgsI	TTSAA	4 cut(s)	9, 104, 149, 408
AjnI	CCWGG	1 cut(s)	325
AluBI	AGCT	4 cut(s)	285, 461, 527, 553
AluI	AGCT	4 cut(s)	285, 461, 527, 553
Alw26I	GTCTC	1 cut(s)	585
ApeKI	GCWGC	2 cut(s)	285, 550
ApoI	RAATTY	1 cut(s)	238
AspS9I	GGNCC	1 cut(s)	350
AsuHPI	GGTGA	2 cut(s)	235, 529
AvaII	GGWCC	1 cut(s)	350
BbsI	GAAGAC	1 cut(s)	144
BbvI	GCAGC	2 cut(s)	272, 562
BccI	CCATC	2 cut(s)	78, 269
BciT130I	CCWGG	1 cut(s)	327
BcoDI	GTCTC	1 cut(s)	585
BfaI	CTAG	1 cut(s)	458
BfmI	CTRYAG	2 cut(s)	286, 548
BfuAI	ACCTGC	1 cut(s)	383
BisI	GCNGC	3 cut(s)	126, 286, 551
BlsI	GCNGC	3 cut(s)	127, 287, 552
Bme1390I	CCNGG	1 cut(s)	327
Bme18I	GGWCC	1 cut(s)	350
BmgT120I	GGNCC	1 cut(s)	350
BmiI	GGNNCC	2 cut(s)	171, 351
BmrFI	CCNGG	1 cut(s)	327
BmrI	ACTGGG	1 cut(s)	69
BmsI	GCATC	2 cut(s)	112, 373
BmuI	ACTGGG	1 cut(s)	69
BpiI	GAAGAC	1 cut(s)	144
BsaJI	CCNNGG	2 cut(s)	301, 326
Bsc4I	CCNNNNNNNGG	3 cut(s)	166, 304, 327
Bse1I	ACTGG	2 cut(s)	75, 316
BseBI	CCWGG	1 cut(s)	327
BseDI	CCNNGG	2 cut(s)	301, 326
BseGI	GGATG	1 cut(s)	70
BseLI	CCNNNNNNNGG	3 cut(s)	166, 304, 327
BseNI	ACTGG	2 cut(s)	75, 316
BseXI	GCAGC	2 cut(s)	272, 562
BslFI	GGGAC	1 cut(s)	66
BslI	CCNNNNNNNGG	3 cut(s)	166, 304, 327
BsmAI	GTCTC	1 cut(s)	585
BsmFI	GGGAC	1 cut(s)	66
Bsp143I	GATC	1 cut(s)	290
BspACI	CCGC	2 cut(s)	95, 126
BspHI	TCATGA	1 cut(s)	49
BspLI	GGNNCC	2 cut(s)	171, 351
BspMAI	CTGCAG	2 cut(s)	290, 552
BspMI	ACCTGC	1 cut(s)	383
BsrI	ACTGG	2 cut(s)	75, 316
BssECI	CCNNGG	2 cut(s)	301, 326
BssMI	GATC	1 cut(s)	290
BssNAI	GTATAC	1 cut(s)	532
Bst1107I	GTATAC	1 cut(s)	532
Bst2UI	CCWGG	1 cut(s)	327
Bst4CI	ACNGT	2 cut(s)	109, 517
Bst6I	CTCTTC	1 cut(s)	381
BstDEI	CTNAG	1 cut(s)	570
BstEII	GGTNACC	1 cut(s)	65
BstF5I	GGATG	1 cut(s)	70
BstKTI	GATC	1 cut(s)	293
BstMAI	GTCTC	1 cut(s)	585
BstMBI	GATC	1 cut(s)	290
BstNI	CCWGG	1 cut(s)	327
BstPI	GGTNACC	1 cut(s)	65
BstSCI	CCNGG	1 cut(s)	325
BstSFI	CTRYAG	2 cut(s)	286, 548
BstV1I	GCAGC	2 cut(s)	272, 562
BstV2I	GAAGAC	1 cut(s)	144
BstZ17I	GTATAC	1 cut(s)	532
BtsCI	GGATG	1 cut(s)	70
BtsI	GCAGTG	1 cut(s)	135
BtsIMutI	CAGTG	1 cut(s)	135
BveI	ACCTGC	1 cut(s)	383
CciI	TCATGA	1 cut(s)	49
Cfr13I	GGNCC	1 cut(s)	350
CspCI	CAANNNNNGTGG	2 cut(s)	73, 108
CviAII	CATG	2 cut(s)	50, 207
CviJI	RGCY	7 cut(s)	5, 233, 285, 341, 461, 527, 553
CviKI_1	RGCY	7 cut(s)	5, 233, 285, 341, 461, 527, 553
DdeI	CTNAG	1 cut(s)	570
DpnI	GATC	1 cut(s)	292
DpnII	GATC	1 cut(s)	290
DraI	TTTAAA	1 cut(s)	243
Eam1104I	CTCTTC	1 cut(s)	381
EarI	CTCTTC	1 cut(s)	381
Eco32I	GATATC	1 cut(s)	430
Eco47I	GGWCC	1 cut(s)	350
Eco91I	GGTNACC	1 cut(s)	65
EcoO109I	RGGNCCY	1 cut(s)	350
EcoO65I	GGTNACC	1 cut(s)	65
EcoRII	CCWGG	1 cut(s)	325
EcoRV	GATATC	1 cut(s)	430
FaeI	CATG	2 cut(s)	53, 210
FaqI	GGGAC	1 cut(s)	66
FatI	CATG	2 cut(s)	49, 206
FauNDI	CATATG	1 cut(s)	478
FblI	GTMKAC	1 cut(s)	531
Fnu4HI	GCNGC	3 cut(s)	126, 286, 551
FokI	GGATG	1 cut(s)	57
Fsp4HI	GCNGC	3 cut(s)	126, 286, 551
FspBI	CTAG	1 cut(s)	458
GluI	GCNGC	3 cut(s)	126, 286, 551
Hin1II	CATG	2 cut(s)	53, 210
HinfI	GANTC	2 cut(s)	140, 560
HphI	GGTGA	2 cut(s)	235, 529
Hpy166II	GTNNAC	1 cut(s)	532
Hpy188I	TCNGA	1 cut(s)	302
Hpy188III	TCNNGA	3 cut(s)	50, 202, 380
Hpy8I	GTNNAC	1 cut(s)	532
HpyAV	CCTTC	3 cut(s)	127, 248, 363
HpyCH4III	ACNGT	2 cut(s)	109, 517
HpyCH4V	TGCA	3 cut(s)	44, 288, 550
HpyF3I	CTNAG	1 cut(s)	570
Hsp92II	CATG	2 cut(s)	53, 210
Kzo9I	GATC	1 cut(s)	290
LmnI	GCTCC	1 cut(s)	524
LpnPI	CCDG	8 cut(s)	88, 297, 312, 339, 342, 378, 408, 570
Lsp1109I	GCAGC	2 cut(s)	272, 562
LweI	GCATC	2 cut(s)	112, 373
MaeI	CTAG	1 cut(s)	458
MaeIII	GTNAC	3 cut(s)	65, 307, 481
MalI	GATC	1 cut(s)	292
MboI	GATC	1 cut(s)	290
MboII	GAAGA	5 cut(s)	149, 224, 291, 368, 592
MluCI	AATT	3 cut(s)	9, 45, 238
MlyI	GAGTC	2 cut(s)	134, 569
MnlI	CCTC	5 cut(s)	91, 184, 244, 296, 308
MseI	TTAA	3 cut(s)	30, 242, 512
MslI	CAYNNNNRTG	4 cut(s)	24, 54, 270, 500
MspR9I	CCNGG	1 cut(s)	327
MvaI	CCWGG	1 cut(s)	327
NdeI	CATATG	1 cut(s)	478
NdeII	GATC	1 cut(s)	290
NlaIII	CATG	2 cut(s)	53, 210
NlaIV	GGNNCC	2 cut(s)	171, 351
PagI	TCATGA	1 cut(s)	49
PkrI	GCNGC	3 cut(s)	127, 287, 552
PleI	GAGTC	2 cut(s)	134, 568
PpsI	GAGTC	2 cut(s)	134, 568
PpuMI	RGGWCCY	1 cut(s)	350
Psp5II	RGGWCCY	1 cut(s)	350
Psp6I	CCWGG	1 cut(s)	325
PspEI	GGTNACC	1 cut(s)	65
PspGI	CCWGG	1 cut(s)	325
PspN4I	GGNNCC	2 cut(s)	171, 351
PspPI	GGNCC	1 cut(s)	350
PspPPI	RGGWCCY	1 cut(s)	350
PsrI	GAACNNNNNNTAC	2 cut(s)	388, 420
PstI	CTGCAG	2 cut(s)	290, 552
RseI	CAYNNNNRTG	4 cut(s)	24, 54, 270, 500
SaqAI	TTAA	3 cut(s)	30, 242, 512
SatI	GCNGC	3 cut(s)	126, 286, 551
Sau3AI	GATC	1 cut(s)	290
Sau96I	GGNCC	1 cut(s)	350
SchI	GAGTC	2 cut(s)	134, 569
ScrFI	CCNGG	1 cut(s)	327
SetI	ASST	7 cut(s)	102, 171, 287, 397, 463, 529, 555
SfaNI	GCATC	2 cut(s)	112, 373
SfcI	CTRYAG	2 cut(s)	286, 548
SinI	GGWCC	1 cut(s)	350
SmiI	ATTTAAAT	1 cut(s)	243
SmiMI	CAYNNNNRTG	4 cut(s)	24, 54, 270, 500
Sse9I	AATT	3 cut(s)	9, 45, 238
SsiI	CCGC	2 cut(s)	95, 126
SspMI	CTAG	1 cut(s)	458
StyD4I	CCNGG	1 cut(s)	325
SwaI	ATTTAAAT	1 cut(s)	243
TaaI	ACNGT	2 cut(s)	109, 517
TaqI	TCGA	1 cut(s)	180
TasI	AATT	3 cut(s)	9, 45, 238
TauI	GCSGC	1 cut(s)	128
Tru1I	TTAA	3 cut(s)	30, 242, 512
Tru9I	TTAA	3 cut(s)	30, 242, 512
TscAI	CASTG	1 cut(s)	135
TseI	GCWGC	2 cut(s)	285, 550
TspDTI	ATGAA	2 cut(s)	38, 66
TspGWI	ACGGA	1 cut(s)	422
TspRI	CASTG	1 cut(s)	135
VpaK11BI	GGWCC	1 cut(s)	350
XapI	RAATTY	1 cut(s)	238
XmiI	GTMKAC	1 cut(s)	531
XspI	CTAG	1 cut(s)	458

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.