Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8425243.1

Orthogroup ID

OG0000287

Physical Location & Seq

Genomic Coordinates Reverse (-)

410 .. 1415

Gene Structure 1006 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8425243.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 831 bp

atgtatcgcgatctaggctactactggcttcgacttgcaatttacattgccctgtgcttatgtgtagggactatttttcatgacatcggctccacttttgggtcaatacaggctagaggatcaatgctcatgtttgttgcatcattcttgactttcatggcaattggtggattcccttcttttgttgaagacatgaagatcttcgggcgggaaagattaaacgggcactatggcgttgctgcatatgtggttggaaacacactttcctccattccatatttgctaatggtatccttaattcctggagcaattgcctattaccttgttggccttcagaagagctttgaccacttcgcctattttgcattggttctatttgtgtgtctgatgttggttgagagcctgatgatgattgtagcaagcattgtgccagatttcctcatggggatcatcacaggtgctgggattcaaggaataatgatgttgaatggaggtttcttccgtttgccagacgatcttccgaagcccttttggagatacccaatgtactacattgcattccacaagtatgcaaatcaaggattctacaagaatgagtttgaaggacgaacattccccaataaccaagcaggagggccacccaccattacaggtgaagaaatattgaagagtacttggcaagtggagatgggctattctaagtgggttgatcttgccattttgttgggaatggtaattgtttacaggctgatgtttttgggaataataaagataagtgaaaaggttgtgccaatgatcaaagctcttcttgttggtgttcccaaacactga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0001101 GO:0003002 GO:0003006 GO:0003674 GO:0003824 GO:0005215 GO:0005319 GO:0005342 GO:0005488 GO:0005515 GO:0005575 GO:0005623 GO:0005886 GO:0006810 GO:0006811 GO:0006820 GO:0006869 GO:0006950 GO:0006970 GO:0007275 GO:0007389 GO:0008028 GO:0008150 GO:0008509 GO:0008514 GO:0009611 GO:0009628 GO:0009651 GO:0009653 GO:0009719 GO:0009725 GO:0009737 GO:0009790 GO:0009791 GO:0009793 GO:0009897 GO:0009965 GO:0009986 GO:0010016 GO:0010033 GO:0010051 GO:0010154 GO:0010222 GO:0010588 GO:0010876 GO:0015075 GO:0015245 GO:0015318 GO:0015399 GO:0015405 GO:0015711 GO:0015718 GO:0015849 GO:0015908 GO:0016020 GO:0016021 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0022414 GO:0022804 GO:0022857 GO:0031224 GO:0032501 GO:0032502 GO:0033036 GO:0033993 GO:0034220 GO:0042221 GO:0042623 GO:0042626 GO:0042802 GO:0042803 GO:0043492 GO:0044425 GO:0044459 GO:0044464 GO:0046942 GO:0046943 GO:0046983 GO:0048316 GO:0048366 GO:0048367 GO:0048598 GO:0048608 GO:0048731 GO:0048825 GO:0048826 GO:0048827 GO:0048856 GO:0050896 GO:0051179 GO:0051234 GO:0055085 GO:0061458 GO:0071702 GO:0071944 GO:0080051 GO:0090698 GO:0097305 GO:0098552 GO:0098656 GO:0099402 GO:1901700 GO:1903825 GO:1905039 GO:1905392

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

ABC2_membrane ABC_tran

Protein Analysis

276

Amino Acids

31.01

Weight (kDa)

8.63

Isoelectric Point (pI)

21.26

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000287)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g20390 FvH4_1g20390 FvH4_1g20390 FvH4_1g20390 FvH4_1g20390 FvH4_1g20400 FvH4_1g20400 FvH4_1g20400 FvH4_1g20400 FvH4_1g20400 FvH4_1g20410 FvH4_1g20410 FvH4_6g39250 FvH4_6g39250
malus_domestica	MD00G1036800.v1.1 MD05G1042600.v1.1 MD10G1049900.v1.1
prunus_persica	Prupe.6G191500_v2.0.a1 Prupe.8G064300_v2.0.a1 Prupe.8G064300_v2.0.a1 Prupe.8G064400_v2.0.a1
pyrus_communis	pycom05g03520 pycom10g03500 pycom10g03510 pycom15g28250
rosa_chinensis	RchiOBHm_Chr1g0336561 RchiOBHm_Chr2g0112551 RchiOBHm_Chr2g0112561 RchiOBHm_Chr2g0112631 RchiOBHm_Chr2g0112641 RchiOBHm_Chr2g0153091 RchiOBHm_Chr2g0153111 RchiOBHm_Chr2g0153141 RchiOBHm_Chr2g0153161 RchiOBHm_Chr2g0153171
rosa_laevigata	RLG00000017991 RLG00000017992 RLG00000017995 RLG00000017997 RLG00000020676 RLG00000020677 RLG00000020678 RLG00000020682
rosa_multiflora	Rmu_co8208234.1_g000001 Rmu_co8218328.1_g000001 Rmu_co8425243.1_g000001 Rmu_sc0000218.1_g000037 Rmu_sc0000218.1_g000044 Rmu_sc0000218.1_g000047 Rmu_sc0000218.1_g000052 Rmu_sc0001155.1_g000011 Rmu_sc0001155.1_g000026 Rmu_sc0001155.1_g000029 Rmu_sc0001499.1_g000001 Rmu_sc0001499.1_g000040 Rmu_sc0002401.1_g000032 Rmu_sc0002401.1_g000033 Rmu_sc0004070.1_g000003 Rmu_sc0004070.1_g000004 Rmu_sc0005547.1_g000001 Rmu_sc0006062.1_g000002 Rmu_sc0009780.1_g000005 Rmu_sc0013071.1_g000001 Rmu_sc0013071.1_g000012
rosa_roxburghii	Rroxscaffold_2G00095130 Rroxscaffold_2G00095140 Rroxscaffold_2G00095160 Rroxscaffold_2G00095180 Rroxscaffold_2G00095190 Rroxscaffold_2G00095200 Rroxscaffold_2G00131290 Rroxscaffold_2G00131320 Rroxscaffold_2G00131350
rosa_rugosa	Rorug02G0181500 Rorug02G0181500 Rorug02G0181600 Rorug02G0181700 Rorug02G0437300 Rorug02G0437400
rosa_samantha	Rh1DG154100 Rh2AG235200 Rh2AG235300 Rh2AG235400 Rh2AG235600 Rh2AG235800 Rh2AG499700 Rh2AG499800 Rh2AG500000 Rh2AG500100 Rh2AG500200 Rh2BG248500 Rh2BG248700 Rh2BG248800 Rh2BG511000 Rh2BG511200 Rh2BG511300 Rh2BG511600 Rh2CG239600 Rh2CG239700 Rh2CG239900 Rh2CG240000 Rh2CG485900 Rh2CG486000 Rh2CG486200 Rh2CG486300 Rh2CG486400 Rh2DG242500 Rh2DG242600 Rh2DG242700 Rh2DG242900 Rh2DG243100 Rh2DG522800 Rh2DG523100 Rh2DG523200 Rh2DG523500 Rh2DG523600 Rh5DG200200
rosa_wichuraiana	Rw2G018200 Rw2G018210 Rw2G018230 Rw2G018240 Rw2G041010 Rw2G041020 Rw2G041030 Rw2G041050

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	9
AciI	CCGC	1 cut(s)	208
AclWI	GGATC	2 cut(s)	127, 455
AcuI	CTGAAG	1 cut(s)	317
AfaI	GTAC	2 cut(s)	548, 673
AfiI	CCNNNNNNNGG	1 cut(s)	99
AgsI	TTSAA	5 cut(s)	188, 470, 487, 602, 667
AjnI	CCWGG	1 cut(s)	301
AluBI	AGCT	2 cut(s)	342, 803
AluI	AGCT	2 cut(s)	342, 803
AlwI	GGATC	2 cut(s)	127, 455
AlwNI	CAGNNNCTG	1 cut(s)	461
AoxI	GGCC	2 cut(s)	328, 635
ApeKI	GCWGC	1 cut(s)	239
Asp700I	GAANNNNTTC	1 cut(s)	200
AspS9I	GGNCC	1 cut(s)	635
AsuHPI	GGTGA	1 cut(s)	665
BaeGI	GKGCMC	1 cut(s)	228
BbsI	GAAGAC	1 cut(s)	195
BbvI	GCAGC	1 cut(s)	226
BccI	CCATC	1 cut(s)	682
BciT130I	CCWGG	1 cut(s)	303
BciVI	GTATCC	1 cut(s)	301
BclI	TGATCA	1 cut(s)	795
BfaI	CTAG	2 cut(s)	14, 114
BfuI	GTATCC	1 cut(s)	301
BglII	AGATCT	1 cut(s)	198
BisI	GCNGC	1 cut(s)	240
BlsI	GCNGC	1 cut(s)	241
BmcAI	AGTACT	1 cut(s)	673
Bme1390I	CCNGG	1 cut(s)	303
BmgT120I	GGNCC	1 cut(s)	635
BmiI	GGNNCC	1 cut(s)	91
BmrFI	CCNGG	1 cut(s)	303
BmsI	GCATC	1 cut(s)	149
BpiI	GAAGAC	1 cut(s)	195
BpmI	CTGGAG	1 cut(s)	324
BsaXI	ACNNNNNCTCC	2 cut(s)	74, 104
Bsc4I	CCNNNNNNNGG	1 cut(s)	99
Bse1I	ACTGG	1 cut(s)	29
Bse3DI	GCAATG	2 cut(s)	45, 552
BseBI	CCWGG	1 cut(s)	303
BseLI	CCNNNNNNNGG	1 cut(s)	99
BseMI	GCAATG	2 cut(s)	45, 552
BseNI	ACTGG	1 cut(s)	29
BseSI	GKGCMC	1 cut(s)	228
BseXI	GCAGC	1 cut(s)	226
BseYI	CCCAGC	1 cut(s)	461
Bsh1236I	CGCG	1 cut(s)	9
BshFI	GGCC	2 cut(s)	330, 637
BslFI	GGGAC	1 cut(s)	82
BslI	CCNNNNNNNGG	1 cut(s)	99
BsmFI	GGGAC	1 cut(s)	82
BsmI	GAATGC	1 cut(s)	557
BsnI	GGCC	2 cut(s)	330, 637
Bsp1286I	GDGCHC	1 cut(s)	228
Bsp143I	GATC	7 cut(s)	10, 119, 198, 447, 514, 709, 795
Bsp68I	TCGCGA	1 cut(s)	9
BspACI	CCGC	1 cut(s)	208
BspANI	GGCC	2 cut(s)	330, 637
BspFNI	CGCG	1 cut(s)	9
BspHI	TCATGA	1 cut(s)	79
BspLI	GGNNCC	1 cut(s)	91
BspPI	GGATC	2 cut(s)	127, 455
BspQI	GCTCTTC	2 cut(s)	332, 810
BsrDI	GCAATG	2 cut(s)	45, 552
BsrI	ACTGG	1 cut(s)	29
BssMI	GATC	7 cut(s)	10, 119, 198, 447, 514, 709, 795
Bst2UI	CCWGG	1 cut(s)	303
Bst6I	CTCTTC	3 cut(s)	332, 662, 810
BstC8I	GCNNGC	1 cut(s)	421
BstDEI	CTNAG	1 cut(s)	699
BstFNI	CGCG	1 cut(s)	9
BstKTI	GATC	7 cut(s)	13, 122, 201, 450, 517, 712, 798
BstMBI	GATC	7 cut(s)	10, 119, 198, 447, 514, 709, 795
BstMWI	GCNNNNNNNGC	2 cut(s)	15, 362
BstNI	CCWGG	1 cut(s)	303
BstSCI	CCNGG	1 cut(s)	301
BstSLI	GKGCMC	1 cut(s)	228
BstUI	CGCG	1 cut(s)	9
BstV1I	GCAGC	1 cut(s)	226
BstV2I	GAAGAC	1 cut(s)	195
BstX2I	RGATCY	1 cut(s)	198
BstXI	CCANNNNNNTGG	1 cut(s)	724
BstYI	RGATCY	1 cut(s)	198
BsuI	GTATCC	1 cut(s)	301
BsuRI	GGCC	2 cut(s)	330, 637
BtsIMutI	CAGTG	1 cut(s)	826
BtuMI	TCGCGA	1 cut(s)	9
Cac8I	GCNNGC	1 cut(s)	421
CaiI	CAGNNNCTG	1 cut(s)	461
CciI	TCATGA	1 cut(s)	79
Cfr13I	GGNCC	1 cut(s)	635
Csp6I	GTAC	2 cut(s)	547, 672
CviAII	CATG	5 cut(s)	80, 130, 157, 193, 442
CviQI	GTAC	2 cut(s)	547, 672
DdeI	CTNAG	1 cut(s)	699
DpnI	GATC	7 cut(s)	12, 121, 200, 449, 516, 711, 797
DpnII	GATC	7 cut(s)	10, 119, 198, 447, 514, 709, 795
Eam1104I	CTCTTC	3 cut(s)	332, 662, 810
EarI	CTCTTC	3 cut(s)	332, 662, 810
Eco57I	CTGAAG	1 cut(s)	317
EcoRII	CCWGG	1 cut(s)	301
FaeI	CATG	5 cut(s)	83, 133, 160, 196, 445
FalI	AAGNNNNNCTT	2 cut(s)	792, 824
FaqI	GGGAC	1 cut(s)	82
FatI	CATG	5 cut(s)	79, 129, 156, 192, 441
FauI	CCCGC	1 cut(s)	201
FauNDI	CATATG	1 cut(s)	244
FbaI	TGATCA	1 cut(s)	795
Fnu4HI	GCNGC	1 cut(s)	240
Fsp4HI	GCNGC	1 cut(s)	240
FspBI	CTAG	2 cut(s)	14, 114
GluI	GCNGC	1 cut(s)	240
GsaI	CCCAGC	1 cut(s)	465
GsuI	CTGGAG	1 cut(s)	324
HaeIII	GGCC	2 cut(s)	330, 637
Hin1II	CATG	5 cut(s)	83, 133, 160, 196, 445
HinfI	GANTC	3 cut(s)	171, 466, 582
HphI	GGTGA	1 cut(s)	665
Hpy166II	GTNNAC	1 cut(s)	742
Hpy188I	TCNGA	3 cut(s)	336, 387, 522
Hpy188III	TCNNGA	3 cut(s)	8, 80, 148
Hpy8I	GTNNAC	1 cut(s)	742
HpyAV	CCTTC	3 cut(s)	186, 341, 596
HpyCH4V	TGCA	6 cut(s)	38, 140, 242, 365, 557, 572
HpyF10VI	GCNNNNNNNGC	2 cut(s)	15, 362
HpyF3I	CTNAG	1 cut(s)	699
Hsp92II	CATG	5 cut(s)	83, 133, 160, 196, 445
Ksp22I	TGATCA	1 cut(s)	795
Kzo9I	GATC	7 cut(s)	10, 119, 198, 447, 514, 709, 795
LguI	GCTCTTC	2 cut(s)	332, 810
LmnI	GCTCC	2 cut(s)	95, 305
Lsp1109I	GCAGC	1 cut(s)	226
LweI	GCATC	1 cut(s)	149
MaeI	CTAG	2 cut(s)	14, 114
MalI	GATC	7 cut(s)	12, 121, 200, 449, 516, 711, 797
MboI	GATC	7 cut(s)	10, 119, 198, 447, 514, 709, 795
MboII	GAAGA	9 cut(s)	193, 200, 208, 349, 490, 509, 668, 679, 797
MfeI	CAATTG	2 cut(s)	162, 309
MflI	RGATCY	1 cut(s)	198
MhlI	GDGCHC	1 cut(s)	228
MluCI	AATT	5 cut(s)	39, 162, 297, 309, 735
MmeI	TCCRAC	1 cut(s)	232
MnlI	CCTC	5 cut(s)	110, 277, 449, 485, 626
MroXI	GAANNNNTTC	1 cut(s)	200
MseI	TTAA	2 cut(s)	218, 296
MslI	CAYNNNNRTG	1 cut(s)	567
MspR9I	CCNGG	1 cut(s)	303
MunI	CAATTG	2 cut(s)	162, 309
Mva1269I	GAATGC	1 cut(s)	557
MvaI	CCWGG	1 cut(s)	303
MvnI	CGCG	1 cut(s)	9
MwoI	GCNNNNNNNGC	2 cut(s)	15, 362
NdeI	CATATG	1 cut(s)	244
NdeII	GATC	7 cut(s)	10, 119, 198, 447, 514, 709, 795
NlaIII	CATG	5 cut(s)	83, 133, 160, 196, 445
NlaIV	GGNNCC	1 cut(s)	91
NruI	TCGCGA	1 cut(s)	9
PagI	TCATGA	1 cut(s)	79
PciSI	GCTCTTC	2 cut(s)	332, 810
PctI	GAATGC	1 cut(s)	557
PdmI	GAANNNNTTC	1 cut(s)	200
PfeI	GAWTC	3 cut(s)	171, 466, 582
PfoI	TCCNGGA	1 cut(s)	301
PkrI	GCNGC	1 cut(s)	241
Psp6I	CCWGG	1 cut(s)	301
PspFI	CCCAGC	1 cut(s)	461
PspGI	CCWGG	1 cut(s)	301
PspN4I	GGNNCC	1 cut(s)	91
PspPI	GGNCC	1 cut(s)	635
PstNI	CAGNNNCTG	1 cut(s)	461
PsuI	RGATCY	1 cut(s)	198
RruI	TCGCGA	1 cut(s)	9
RsaI	GTAC	2 cut(s)	548, 673
RsaNI	GTAC	2 cut(s)	547, 672
RseI	CAYNNNNRTG	1 cut(s)	567
SapI	GCTCTTC	2 cut(s)	332, 810
SaqAI	TTAA	2 cut(s)	218, 296
SatI	GCNGC	1 cut(s)	240
Sau3AI	GATC	7 cut(s)	10, 119, 198, 447, 514, 709, 795
Sau96I	GGNCC	1 cut(s)	635
ScaI	AGTACT	1 cut(s)	673
ScrFI	CCNGG	1 cut(s)	303
SduI	GDGCHC	1 cut(s)	228
SetI	ASST	7 cut(s)	324, 344, 460, 496, 655, 786, 805
SfaNI	GCATC	1 cut(s)	149
SmiMI	CAYNNNNRTG	1 cut(s)	567
Sse9I	AATT	5 cut(s)	39, 162, 297, 309, 735
SsiI	CCGC	1 cut(s)	208
SspI	AATATT	1 cut(s)	663
SspMI	CTAG	2 cut(s)	14, 114
StyD4I	CCNGG	1 cut(s)	301
TaqI	TCGA	1 cut(s)	31
TasI	AATT	5 cut(s)	39, 162, 297, 309, 735
TatI	WGTACW	2 cut(s)	546, 671
TfiI	GAWTC	3 cut(s)	171, 466, 582
Tru1I	TTAA	2 cut(s)	218, 296
Tru9I	TTAA	2 cut(s)	218, 296
TseI	GCWGC	1 cut(s)	239
TspDTI	ATGAA	3 cut(s)	68, 145, 209
TspGWI	ACGGA	1 cut(s)	491
XmnI	GAANNNNTTC	1 cut(s)	200
XspI	CTAG	2 cut(s)	14, 114
ZrmI	AGTACT	1 cut(s)	673

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.