Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000002

Orthogroup ID

OG0000287

Physical Location & Seq

Genomic Coordinates Reverse (-)

67923313 .. 67928556

Gene Structure 5244 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_2G00131350.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2121 bp

ATGGAGTCTTCTTCTCCAGCTAGTTTTCCCAGATGGGCACCAGGTCCAAGCTCCTCAAGAGTACTATTATCACCTGTGGAAGACCCCAGGTTTGAGGCAAGTGCTGATCATAATGATCATGATTCTGTAGAGGATGGCATATCCTCATTATCTTCTAGTATGGACAGGATTTTCCCATTTAGCGTTGAATTCAATGGCACCACTACTACTACCGCTGCTGCTTCTGTGGTTAAAAAGTCACTAGATGATCAAAGTGCTTATGTTAGAAGCACAAGTGGTACTATGCTTGTTTCTTTGACATGGGAGGACCTGTGGGTTGGAGTAGGTGATGAGAAAGGTGGGCAGAGAATGATTTTGCAGGGGCTTACTGGGTTTGCACAACCTGGTCAGGTTTTGGCTATTATGGGTCCTTCTGGCTGTGGCAAATCCACCCTTTTGGATGCTTTAGCGGGAAGGCTAAATTCAAACACACAGCAGAGAGGGAAGATCCTGATCAATGGCCGCAAAGAAAAACTTGTTTGCGGAACCTCGGCATATGTGACACAAGATGACACACTAATGACAACCTTAACAGTAAGGGAAGTTGTGTATTACTCGGCGCAGCTCCAACTGCCTAACTCCATGTCGAAAGCAGAAAAGAAGGAAAGAGCAGAGACAACAATAAGGGAGATGGGCCTGCAAGACGCCATGCACACAAGAATAGGAGGTTGGAGCAGCAAAGGTCTCAGTGGTGGACAAAAAAGAAGAGTTAGCATCTGCATTGAAATCTTGACTCGTCCCAAGCTTCTCTTCCTTGATGAGCCTACTAGTGGGCTAGACAGTGCTGCTTCTTACCACGTCATGAAACGCATTGTGAAGCTGGCTCACCGGGATGGAAGGACAGTTATTGCATCAATTCATCAACCTAGCAGTGAAGTTTTTGAGCTTTTCCAAAACCTCTGTCTTCTTTCCTCTGGCAAAACAGTCTATTTTGGCCCTGCTTCAAAGGCAGAGCAGTTCTTTGCTTCAAATGGCTTCCCATGTCCAACTATGACAAACCCATCGGATCATTACCTTAGAACAATTAACAAGGACTTTGATGTTGACATCGAACAAGGACATGATGGCAAAACAAGCACTGAGGAAGCAATCAATATTCTCATAAGATCATACGAGTCTTCAAATACTTTAAAGCAAGTTCACCTCAGGGTAAACGAGATCTGCCAACAGAGAGGTGGAGCTCTGGAGAAGGGAAGCCAAGCCAACTTCATAACTCAATGCCTGGTTTTGACAAGGAGATCATTTGTGAACATGTATCGCGATCTAGGCTACTACTGGCTTCGACTTGCAATTTACATTGCCTTGTGCTTATGTGTAGGGACTATTTTTCACGACATCGGCTCGACTTTTGGGTCAATACAGGCTAGAGGATCAATGCTCATGTTTGTTGCAGCATTCTTAACTTTCATGGCAATAGGTGGATTTCCTTCTTTTGTAGAAGACATGAAGATTTTCGAGCGTGAAAGATTAAACGGGCACTATGGCGTTGCTGCATATGTGGTTGGAAACACACTTTCCTCCATTCCATATTTGCTAATGGTATCTTTAATTCCTGGAGCAATTGCCTATTACCTTGTTGGCCTTCAGAAGAGCTTTGACCACTTCGCCTATTTTGGATTGGTTCTATTTGTGTGTCTGATGTTGGTTGAGAGCCTGATGATGATTGTAGCAAGCATTGTGCCAGATTTCCTCATGGGGATCATCACAGGTGCTGGGATTCAAGGAATAATGATGTTGAATGGAGGTTTCTTCCGTTTGCCGGACGATCTTCCGAAGCCCTTTTGGAGATACCCAATGTACTACATTGCATTCCACAAGTATGCAAATCAAGGATTCTACAAGAATGAGTTTGAAGGACTAACATTCCCCAATAACCAAGCAGGAGGGCCACCCACCATTACAGGTGAAGAAATATTGAAGAGTACTTGGCAAGTGGAGATGGGCTATTCTAAGTGGGTTGATCTTGCCATTTTGTTGGGAATGGTAATTGCTTACAGGCTGATGTTTTTGGGAATAATAAAGATAAGTGAAAAGGTTGTGCCAATGACCAAAACTCTTCTTGTTGGTGCCCCCAAACACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0001101 GO:0003002 GO:0003006 GO:0003674 GO:0003824 GO:0005215 GO:0005319 GO:0005342 GO:0005488 GO:0005515 GO:0005575 GO:0005623 GO:0005886 GO:0006810 GO:0006811 GO:0006820 GO:0006869 GO:0006950 GO:0006970 GO:0007275 GO:0007389 GO:0008028 GO:0008150 GO:0008509 GO:0008514 GO:0009611 GO:0009628 GO:0009651 GO:0009653 GO:0009719 GO:0009725 GO:0009737 GO:0009790 GO:0009791 GO:0009793 GO:0009897 GO:0009965 GO:0009986 GO:0010016 GO:0010033 GO:0010051 GO:0010154 GO:0010222 GO:0010588 GO:0010876 GO:0015075 GO:0015245 GO:0015318 GO:0015399 GO:0015405 GO:0015711 GO:0015718 GO:0015849 GO:0015908 GO:0016020 GO:0016021 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0022414 GO:0022804 GO:0022857 GO:0031224 GO:0032501 GO:0032502 GO:0033036 GO:0033993 GO:0034220 GO:0042221 GO:0042623 GO:0042626 GO:0042802 GO:0042803 GO:0043492 GO:0044425 GO:0044459 GO:0044464 GO:0046942 GO:0046943 GO:0046983 GO:0048316 GO:0048366 GO:0048367 GO:0048598 GO:0048608 GO:0048731 GO:0048825 GO:0048826 GO:0048827 GO:0048856 GO:0050896 GO:0051179 GO:0051234 GO:0055085 GO:0061458 GO:0071702 GO:0071944 GO:0080051 GO:0090698 GO:0097305 GO:0098552 GO:0098656 GO:0099402 GO:1901700 GO:1903825 GO:1905039 GO:1905392

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

ABC2_membrane ABC_tran

Protein Analysis

706

Amino Acids

77.97

Weight (kDa)

7.58

Isoelectric Point (pI)

38.22

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ABC_tran	PF00005	123 - 270	8.2e-29	ABC transporter
ABC2_membrane_7	PF19055	300 - 355	8.8e-10	ABC-2 type transporter
ABC2_membrane	PF01061	418 - 630	2.3e-43	ABC-2 type transporter

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000287)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g20390 FvH4_1g20390 FvH4_1g20390 FvH4_1g20390 FvH4_1g20390 FvH4_1g20400 FvH4_1g20400 FvH4_1g20400 FvH4_1g20400 FvH4_1g20400 FvH4_1g20410 FvH4_1g20410 FvH4_6g39250 FvH4_6g39250
malus_domestica	MD00G1036800.v1.1 MD05G1042600.v1.1 MD10G1049900.v1.1
prunus_persica	Prupe.6G191500_v2.0.a1 Prupe.8G064300_v2.0.a1 Prupe.8G064300_v2.0.a1 Prupe.8G064400_v2.0.a1
pyrus_communis	pycom05g03520 pycom10g03500 pycom10g03510 pycom15g28250
rosa_chinensis	RchiOBHm_Chr1g0336561 RchiOBHm_Chr2g0112551 RchiOBHm_Chr2g0112561 RchiOBHm_Chr2g0112631 RchiOBHm_Chr2g0112641 RchiOBHm_Chr2g0153091 RchiOBHm_Chr2g0153111 RchiOBHm_Chr2g0153141 RchiOBHm_Chr2g0153161 RchiOBHm_Chr2g0153171
rosa_laevigata	RLG00000017991 RLG00000017992 RLG00000017995 RLG00000017997 RLG00000020676 RLG00000020677 RLG00000020678 RLG00000020682
rosa_multiflora	Rmu_co8208234.1_g000001 Rmu_co8218328.1_g000001 Rmu_co8425243.1_g000001 Rmu_sc0000218.1_g000037 Rmu_sc0000218.1_g000044 Rmu_sc0000218.1_g000047 Rmu_sc0000218.1_g000052 Rmu_sc0001155.1_g000011 Rmu_sc0001155.1_g000026 Rmu_sc0001155.1_g000029 Rmu_sc0001499.1_g000001 Rmu_sc0001499.1_g000040 Rmu_sc0002401.1_g000032 Rmu_sc0002401.1_g000033 Rmu_sc0004070.1_g000003 Rmu_sc0004070.1_g000004 Rmu_sc0005547.1_g000001 Rmu_sc0006062.1_g000002 Rmu_sc0009780.1_g000005 Rmu_sc0013071.1_g000001 Rmu_sc0013071.1_g000012
rosa_roxburghii	Rroxscaffold_2G00095130 Rroxscaffold_2G00095140 Rroxscaffold_2G00095160 Rroxscaffold_2G00095180 Rroxscaffold_2G00095190 Rroxscaffold_2G00095200 Rroxscaffold_2G00131290 Rroxscaffold_2G00131320 Rroxscaffold_2G00131350
rosa_rugosa	Rorug02G0181500 Rorug02G0181500 Rorug02G0181600 Rorug02G0181700 Rorug02G0437300 Rorug02G0437400
rosa_samantha	Rh1DG154100 Rh2AG235200 Rh2AG235300 Rh2AG235400 Rh2AG235600 Rh2AG235800 Rh2AG499700 Rh2AG499800 Rh2AG500000 Rh2AG500100 Rh2AG500200 Rh2BG248500 Rh2BG248700 Rh2BG248800 Rh2BG511000 Rh2BG511200 Rh2BG511300 Rh2BG511600 Rh2CG239600 Rh2CG239700 Rh2CG239900 Rh2CG240000 Rh2CG485900 Rh2CG486000 Rh2CG486200 Rh2CG486300 Rh2CG486400 Rh2DG242500 Rh2DG242600 Rh2DG242700 Rh2DG242900 Rh2DG243100 Rh2DG522800 Rh2DG523100 Rh2DG523200 Rh2DG523500 Rh2DG523600 Rh5DG200200
rosa_wichuraiana	Rw2G018200 Rw2G018210 Rw2G018230 Rw2G018240 Rw2G041010 Rw2G041020 Rw2G041030 Rw2G041050

Restriction Enzyme Sites

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Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	1390
AccB1I	GGYRCC	3 cut(s)	37, 197, 2105
AccII	CGCG	1 cut(s)	1299
AciI	CCGC	4 cut(s)	213, 449, 502, 522
AclWI	GGATC	4 cut(s)	481, 1053, 1417, 1745
AcoI	YGGCCR	1 cut(s)	499
AcsI	RAATTY	2 cut(s)	188, 460
AcuI	CTGAAG	1 cut(s)	1607
AcyI	GRCGYC	1 cut(s)	684
AfaI	GTAC	4 cut(s)	63, 280, 1838, 1963
AfiI	CCNNNNNNNGG	2 cut(s)	809, 1798
AflIII	ACRYGT	1 cut(s)	1290
AhlI	ACTAGT	1 cut(s)	806
AjiI	CACGTC	1 cut(s)	838
AjnI	CCWGG	5 cut(s)	40, 86, 382, 1260, 1591
AjuI	GAANNNNNNNTTGG	4 cut(s)	691, 723, 773, 805
AluBI	AGCT	8 cut(s)	20, 51, 604, 784, 859, 925, 1220, 1632
AluI	AGCT	8 cut(s)	20, 51, 604, 784, 859, 925, 1220, 1632
Alw21I	GWGCWC	1 cut(s)	1222
Alw26I	GTCTC	2 cut(s)	647, 728
AlwI	GGATC	4 cut(s)	481, 1053, 1417, 1745
AlwNI	CAGNNNCTG	1 cut(s)	1751
AoxI	GGCC	5 cut(s)	499, 673, 973, 1618, 1925
ApeKI	GCWGC	7 cut(s)	215, 218, 601, 714, 824, 1430, 1529
ApoI	RAATTY	2 cut(s)	188, 460
ArsI	GACNNNNNNTTYG	4 cut(s)	74, 106, 925, 957
Asp700I	GAANNNNTTC	1 cut(s)	1490
AspLEI	GCGC	1 cut(s)	601
AspS9I	GGNCC	6 cut(s)	44, 307, 407, 673, 974, 1925
AsuC2I	CCSGG	1 cut(s)	869
AsuHPI	GGTGA	5 cut(s)	63, 338, 857, 1172, 1955
AvaII	GGWCC	3 cut(s)	44, 307, 407
AxyI	CCTNAGG	1 cut(s)	1184
BaeGI	GKGCMC	3 cut(s)	40, 1518, 2110
BanI	GGYRCC	3 cut(s)	37, 197, 2105
BanII	GRGCYC	1 cut(s)	1222
BbsI	GAAGAC	4 cut(s)	87, 935, 1149, 1485
Bbv12I	GWGCWC	1 cut(s)	1222
BbvI	GCAGC	7 cut(s)	202, 205, 613, 726, 811, 1442, 1516
BccI	CCATC	7 cut(s)	27, 128, 664, 866, 1048, 1097, 1972
BciT130I	CCWGG	5 cut(s)	42, 88, 384, 1262, 1593
BclI	TGATCA	4 cut(s)	106, 115, 247, 492
BcnI	CCSGG	1 cut(s)	869
BcoDI	GTCTC	2 cut(s)	647, 728
BcuI	ACTAGT	1 cut(s)	806
BfaI	CTAG	8 cut(s)	21, 156, 242, 807, 815, 906, 1304, 1404
BfmI	CTRYAG	1 cut(s)	126
BglII	AGATCT	1 cut(s)	1197
BisI	GCNGC	8 cut(s)	216, 219, 502, 602, 715, 825, 1431, 1530
BlsI	GCNGC	8 cut(s)	217, 220, 503, 603, 716, 826, 1432, 1531
BmcAI	AGTACT	2 cut(s)	63, 1963
Bme1390I	CCNGG	6 cut(s)	42, 88, 384, 869, 1262, 1593
Bme18I	GGWCC	3 cut(s)	44, 307, 407
BmgBI	CACGTC	1 cut(s)	838
BmgT120I	GGNCC	6 cut(s)	44, 307, 407, 673, 974, 1925
BmiI	GGNNCC	5 cut(s)	39, 199, 408, 526, 2107
BmrFI	CCNGG	6 cut(s)	42, 88, 384, 869, 1262, 1593
BmrI	ACTGGG	1 cut(s)	378
BmsI	GCATC	3 cut(s)	430, 762, 899
BmuI	ACTGGG	1 cut(s)	378
BpiI	GAAGAC	4 cut(s)	87, 935, 1149, 1485
BpmI	CTGGAG	2 cut(s)	1244, 1614
BpuEI	CTTGAG	1 cut(s)	40
BpuMI	CCSGG	1 cut(s)	869
BsaBI	GATNNNNATC	1 cut(s)	491
BsaHI	GRCGYC	1 cut(s)	684
BsaI	GGTCTC	1 cut(s)	728
BsaJI	CCNNGG	2 cut(s)	86, 528
BsaXI	ACNNNNNCTCC	2 cut(s)	296, 326
Bsc4I	CCNNNNNNNGG	2 cut(s)	809, 1798
Bse1I	ACTGG	2 cut(s)	373, 1319
Bse21I	CCTNAGG	1 cut(s)	1184
Bse3DI	GCAATG	2 cut(s)	1335, 1842
Bse8I	GATNNNNATC	1 cut(s)	491
BseBI	CCWGG	5 cut(s)	42, 88, 384, 1262, 1593
BseDI	CCNNGG	2 cut(s)	86, 528
BseGI	GGATG	3 cut(s)	139, 445, 877
BseJI	GATNNNNATC	1 cut(s)	491
BseLI	CCNNNNNNNGG	2 cut(s)	809, 1798
BseMI	GCAATG	2 cut(s)	1335, 1842
BseMII	CTCAG	3 cut(s)	739, 1110, 1198
BseNI	ACTGG	2 cut(s)	373, 1319
BseRI	GAGGAG	1 cut(s)	43
BseSI	GKGCMC	3 cut(s)	40, 1518, 2110
BseXI	GCAGC	7 cut(s)	202, 205, 613, 726, 811, 1442, 1516
BseYI	CCCAGC	1 cut(s)	1751
Bsh1236I	CGCG	1 cut(s)	1299
BshFI	GGCC	5 cut(s)	501, 675, 975, 1620, 1927
BshNI	GGYRCC	3 cut(s)	37, 197, 2105
BsiHKAI	GWGCWC	1 cut(s)	1222
BsiSI	CCGG	2 cut(s)	868, 1799
BslFI	GGGAC	2 cut(s)	762, 1372
BslI	CCNNNNNNNGG	2 cut(s)	809, 1798
BsmAI	GTCTC	2 cut(s)	647, 728
BsmFI	GGGAC	2 cut(s)	762, 1372
BsmI	GAATGC	2 cut(s)	1433, 1847
BsnI	GGCC	5 cut(s)	501, 675, 975, 1620, 1927
Bso31I	GGTCTC	1 cut(s)	728
Bsp1286I	GDGCHC	4 cut(s)	40, 1222, 1518, 2110
Bsp68I	TCGCGA	1 cut(s)	1299
BspACI	CCGC	4 cut(s)	213, 449, 502, 522
BspANI	GGCC	5 cut(s)	501, 675, 975, 1620, 1927
BspCNI	CTCAG	3 cut(s)	738, 1111, 1197
BspFNI	CGCG	1 cut(s)	1299
BspHI	TCATGA	2 cut(s)	118, 840
BspLI	GGNNCC	5 cut(s)	39, 199, 408, 526, 2107
BspPI	GGATC	4 cut(s)	481, 1053, 1417, 1745
BspQI	GCTCTTC	1 cut(s)	1622
BspT107I	GGYRCC	3 cut(s)	37, 197, 2105
BspTNI	GGTCTC	1 cut(s)	728
BsrDI	GCAATG	2 cut(s)	1335, 1842
BsrI	ACTGG	2 cut(s)	373, 1319
BssECI	CCNNGG	2 cut(s)	86, 528
BssNI	GRCGYC	1 cut(s)	684
Bst2UI	CCWGG	5 cut(s)	42, 88, 384, 1262, 1593
Bst4CI	ACNGT	4 cut(s)	574, 821, 883, 964
Bst6I	CTCTTC	5 cut(s)	739, 794, 1622, 1952, 2100
BstACI	GRCGYC	1 cut(s)	684
BstC8I	GCNNGC	3 cut(s)	677, 861, 1711
BstDEI	CTNAG	5 cut(s)	725, 1055, 1119, 1184, 1989
BstF5I	GGATG	3 cut(s)	139, 445, 877
BstFNI	CGCG	1 cut(s)	1299
BstHHI	GCGC	1 cut(s)	601
BstMAI	GTCTC	2 cut(s)	647, 728
BstMWI	GCNNNNNNNGC	4 cut(s)	610, 986, 1113, 1305
BstNI	CCWGG	5 cut(s)	42, 88, 384, 1262, 1593
BstNSI	RCATGY	1 cut(s)	1294
BstSCI	CCNGG	6 cut(s)	40, 86, 382, 867, 1260, 1591
BstSFI	CTRYAG	1 cut(s)	126
BstSLI	GKGCMC	3 cut(s)	40, 1518, 2110
BstUI	CGCG	1 cut(s)	1299
BstV1I	GCAGC	7 cut(s)	202, 205, 613, 726, 811, 1442, 1516
BstV2I	GAAGAC	4 cut(s)	87, 935, 1149, 1485
BstX2I	RGATCY	2 cut(s)	486, 1197
BstXI	CCANNNNNNTGG	2 cut(s)	436, 2014
BstYI	RGATCY	2 cut(s)	486, 1197
Bsu36I	CCTNAGG	1 cut(s)	1184
BsuRI	GGCC	5 cut(s)	501, 675, 975, 1620, 1927
BtrI	CACGTC	1 cut(s)	838
BtsCI	GGATG	3 cut(s)	139, 445, 877
BtsI	GCAGTG	1 cut(s)	916
BtsIMutI	CAGTG	5 cut(s)	733, 826, 916, 1116, 2116
BtuMI	TCGCGA	1 cut(s)	1299
Cac8I	GCNNGC	3 cut(s)	677, 861, 1711
CaiI	CAGNNNCTG	1 cut(s)	1751
CciI	TCATGA	2 cut(s)	118, 840
CfoI	GCGC	1 cut(s)	601
Cfr13I	GGNCC	6 cut(s)	44, 307, 407, 673, 974, 1925
CseI	GACGC	1 cut(s)	692
CsiI	ACCWGGT	2 cut(s)	40, 382
Csp6I	GTAC	4 cut(s)	62, 279, 1837, 1962
CviQI	GTAC	4 cut(s)	62, 279, 1837, 1962
DdeI	CTNAG	5 cut(s)	725, 1055, 1119, 1184, 1989
DraI	TTTAAA	1 cut(s)	1170
DrdI	GACNNNNNNGTC	1 cut(s)	1390
DseDI	GACNNNNNNGTC	1 cut(s)	1390
EaeI	YGGCCR	1 cut(s)	499
Eam1104I	CTCTTC	5 cut(s)	739, 794, 1622, 1952, 2100
EarI	CTCTTC	5 cut(s)	739, 794, 1622, 1952, 2100
Ecl136II	GAGCTC	1 cut(s)	1220
Eco24I	GRGCYC	1 cut(s)	1222
Eco31I	GGTCTC	1 cut(s)	728
Eco47I	GGWCC	3 cut(s)	44, 307, 407
Eco53kI	GAGCTC	1 cut(s)	1220
Eco57I	CTGAAG	1 cut(s)	1607
Eco81I	CCTNAGG	1 cut(s)	1184
EcoICRI	GAGCTC	1 cut(s)	1220
EcoO109I	RGGNCCY	2 cut(s)	307, 407
EcoRI	GAATTC	1 cut(s)	188
EcoRII	CCWGG	5 cut(s)	40, 86, 382, 1260, 1591
EcoT38I	GRGCYC	1 cut(s)	1222
FalI	AAGNNNNNCTT	4 cut(s)	498, 530, 773, 805
FaqI	GGGAC	2 cut(s)	762, 1372
FauI	CCCGC	1 cut(s)	442
FauNDI	CATATG	2 cut(s)	535, 1534
FbaI	TGATCA	4 cut(s)	106, 115, 247, 492
Fnu4HI	GCNGC	8 cut(s)	216, 219, 502, 602, 715, 825, 1431, 1530
FokI	GGATG	3 cut(s)	146, 452, 884
FriOI	GRGCYC	1 cut(s)	1222
Fsp4HI	GCNGC	8 cut(s)	216, 219, 502, 602, 715, 825, 1431, 1530
FspBI	CTAG	8 cut(s)	21, 156, 242, 807, 815, 906, 1304, 1404
GlaI	GCGC	1 cut(s)	600
GluI	GCNGC	8 cut(s)	216, 219, 502, 602, 715, 825, 1431, 1530
GsaI	CCCAGC	1 cut(s)	1755
GsuI	CTGGAG	2 cut(s)	1244, 1614
HaeIII	GGCC	5 cut(s)	501, 675, 975, 1620, 1927
HapII	CCGG	2 cut(s)	868, 1799
HgaI	GACGC	1 cut(s)	692
HhaI	GCGC	1 cut(s)	601
Hin1I	GRCGYC	1 cut(s)	684
Hin6I	GCGC	1 cut(s)	599
HinP1I	GCGC	1 cut(s)	599
HincII	GTYRAC	1 cut(s)	1084
HindII	GTYRAC	1 cut(s)	1084
HindIII	AAGCTT	1 cut(s)	782
HinfI	GANTC	6 cut(s)	5, 122, 772, 1154, 1756, 1872
HpaII	CCGG	2 cut(s)	868, 1799
HphI	GGTGA	5 cut(s)	63, 338, 857, 1172, 1955
Hpy166II	GTNNAC	5 cut(s)	734, 1084, 1180, 1192, 1288
Hpy188I	TCNGA	4 cut(s)	1045, 1626, 1677, 1812
Hpy188III	TCNNGA	8 cut(s)	57, 119, 490, 769, 841, 1223, 1298, 1370
Hpy8I	GTNNAC	5 cut(s)	734, 1084, 1180, 1192, 1288
HpyAV	CCTTC	8 cut(s)	420, 447, 634, 870, 1222, 1476, 1631, 1886
HpyCH4III	ACNGT	4 cut(s)	574, 821, 883, 964
HpyCH4IV	ACGT	1 cut(s)	837
HpyF10VI	GCNNNNNNNGC	4 cut(s)	610, 986, 1113, 1305
HpyF3I	CTNAG	5 cut(s)	725, 1055, 1119, 1184, 1989
HpySE526I	ACGT	1 cut(s)	837
Hsp92I	GRCGYC	1 cut(s)	684
HspAI	GCGC	1 cut(s)	599
Ksp22I	TGATCA	4 cut(s)	106, 115, 247, 492
LguI	GCTCTTC	1 cut(s)	1622
LmnI	GCTCC	5 cut(s)	56, 609, 711, 1217, 1595
Lsp1109I	GCAGC	7 cut(s)	202, 205, 613, 726, 811, 1442, 1516
LweI	GCATC	3 cut(s)	430, 762, 899
MabI	ACCWGGT	2 cut(s)	40, 382
MaeI	CTAG	8 cut(s)	21, 156, 242, 807, 815, 906, 1304, 1404
MaeII	ACGT	1 cut(s)	837
MaeIII	GTNAC	2 cut(s)	237, 538
MfeI	CAATTG	1 cut(s)	1599
MflI	RGATCY	2 cut(s)	486, 1197
MhlI	GDGCHC	4 cut(s)	40, 1222, 1518, 2110
MluCI	AATT	8 cut(s)	188, 460, 894, 1062, 1329, 1587, 1599, 2025
MlyI	GAGTC	3 cut(s)	14, 766, 1163
MmeI	TCCRAC	5 cut(s)	298, 631, 689, 1049, 1522
MroXI	GAANNNNTTC	1 cut(s)	1490
MseI	TTAA	7 cut(s)	231, 569, 1065, 1169, 1439, 1508, 1586
MslI	CAYNNNNRTG	3 cut(s)	557, 870, 1857
MspA1I	CMGCKG	1 cut(s)	215
MspI	CCGG	2 cut(s)	868, 1799
MspR9I	CCNGG	6 cut(s)	42, 88, 384, 869, 1262, 1593
MunI	CAATTG	1 cut(s)	1599
Mva1269I	GAATGC	2 cut(s)	1433, 1847
MvaI	CCWGG	5 cut(s)	42, 88, 384, 1262, 1593
MvnI	CGCG	1 cut(s)	1299
MwoI	GCNNNNNNNGC	4 cut(s)	610, 986, 1113, 1305
NciI	CCSGG	1 cut(s)	869
NdeI	CATATG	2 cut(s)	535, 1534
NlaIV	GGNNCC	5 cut(s)	39, 199, 408, 526, 2107
NmeAIII	GCCGAG	2 cut(s)	509, 575
NmuCI	GTSAC	2 cut(s)	237, 538
NruI	TCGCGA	1 cut(s)	1299
NspI	RCATGY	1 cut(s)	1294
PagI	TCATGA	2 cut(s)	118, 840
PciI	ACATGT	1 cut(s)	1290
PciSI	GCTCTTC	1 cut(s)	1622
PctI	GAATGC	2 cut(s)	1433, 1847
PdmI	GAANNNNTTC	1 cut(s)	1490
PfeI	GAWTC	3 cut(s)	122, 1756, 1872
PfoI	TCCNGGA	1 cut(s)	1591
PkrI	GCNGC	8 cut(s)	217, 220, 503, 603, 716, 826, 1432, 1531
PleI	GAGTC	3 cut(s)	13, 766, 1162
PpsI	GAGTC	3 cut(s)	13, 766, 1162
PpuMI	RGGWCCY	2 cut(s)	307, 407
PscI	ACATGT	1 cut(s)	1290
Psp124BI	GAGCTC	1 cut(s)	1222
Psp5II	RGGWCCY	2 cut(s)	307, 407
Psp6I	CCWGG	5 cut(s)	40, 86, 382, 1260, 1591
PspFI	CCCAGC	1 cut(s)	1751
PspGI	CCWGG	5 cut(s)	40, 86, 382, 1260, 1591
PspN4I	GGNNCC	5 cut(s)	39, 199, 408, 526, 2107
PspPI	GGNCC	6 cut(s)	44, 307, 407, 673, 974, 1925
PspPPI	RGGWCCY	2 cut(s)	307, 407
PstNI	CAGNNNCTG	1 cut(s)	1751
PsuI	RGATCY	2 cut(s)	486, 1197
RruI	TCGCGA	1 cut(s)	1299
RsaI	GTAC	4 cut(s)	63, 280, 1838, 1963
RsaNI	GTAC	4 cut(s)	62, 279, 1837, 1962
RseI	CAYNNNNRTG	3 cut(s)	557, 870, 1857
SacI	GAGCTC	1 cut(s)	1222
SapI	GCTCTTC	1 cut(s)	1622
SaqAI	TTAA	7 cut(s)	231, 569, 1065, 1169, 1439, 1508, 1586
SatI	GCNGC	8 cut(s)	216, 219, 502, 602, 715, 825, 1431, 1530
Sau96I	GGNCC	6 cut(s)	44, 307, 407, 673, 974, 1925
ScaI	AGTACT	2 cut(s)	63, 1963
SchI	GAGTC	3 cut(s)	14, 766, 1163
ScrFI	CCNGG	6 cut(s)	42, 88, 384, 869, 1262, 1593
SduI	GDGCHC	4 cut(s)	40, 1222, 1518, 2110
SexAI	ACCWGGT	2 cut(s)	40, 382
SfaNI	GCATC	3 cut(s)	430, 762, 899
SfcI	CTRYAG	1 cut(s)	126
SinI	GGWCC	3 cut(s)	44, 307, 407
SmiMI	CAYNNNNRTG	3 cut(s)	557, 870, 1857
SmlI	CTYRAG	1 cut(s)	55
SmoI	CTYRAG	1 cut(s)	55
SpeI	ACTAGT	1 cut(s)	806
Sse9I	AATT	8 cut(s)	188, 460, 894, 1062, 1329, 1587, 1599, 2025
SsiI	CCGC	4 cut(s)	213, 449, 502, 522
SspI	AATATT	2 cut(s)	1135, 1953
SspMI	CTAG	8 cut(s)	21, 156, 242, 807, 815, 906, 1304, 1404
SstI	GAGCTC	1 cut(s)	1222
StyD4I	CCNGG	6 cut(s)	40, 86, 382, 867, 1260, 1591
TaaI	ACNGT	4 cut(s)	574, 821, 883, 964
TaiI	ACGT	1 cut(s)	840
TaqI	TCGA	5 cut(s)	626, 1089, 1321, 1382, 1494
TasI	AATT	8 cut(s)	188, 460, 894, 1062, 1329, 1587, 1599, 2025
TatI	WGTACW	3 cut(s)	61, 1836, 1961
TauI	GCSGC	1 cut(s)	504
TfiI	GAWTC	3 cut(s)	122, 1756, 1872
Tru1I	TTAA	7 cut(s)	231, 569, 1065, 1169, 1439, 1508, 1586
Tru9I	TTAA	7 cut(s)	231, 569, 1065, 1169, 1439, 1508, 1586
TscAI	CASTG	4 cut(s)	733, 826, 916, 1123
TseFI	GTSAC	2 cut(s)	237, 538
TseI	GCWGC	7 cut(s)	215, 218, 601, 714, 824, 1430, 1529
Tsp45I	GTSAC	2 cut(s)	237, 538
TspDTI	ATGAA	5 cut(s)	857, 887, 1237, 1435, 1499
TspGWI	ACGGA	1 cut(s)	1781
TspRI	CASTG	4 cut(s)	733, 826, 916, 1123
VpaK11BI	GGWCC	3 cut(s)	44, 307, 407
XapI	RAATTY	2 cut(s)	188, 460
XceI	RCATGY	1 cut(s)	1294
XcmI	CCANNNNNNNNNTGG	1 cut(s)	1211
XmnI	GAANNNNTTC	1 cut(s)	1490
XspI	CTAG	8 cut(s)	21, 156, 242, 807, 815, 906, 1304, 1404
ZrmI	AGTACT	2 cut(s)	63, 1963

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.