Rmu_co8208234.1_g000001

ABC transporter G family member

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_co8208234.1
Physical Location & Seq
Reverse (-)
1 .. 680
680 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_co8208234.1_g000001.1.cds

Sequence Viewer

Length: 540 bp
atgaagattttcgagcgtgaaagattaaacgggcactatggcgttgctgcatatgtggttggaaacacactttcctccattccatatttgctaatggtatctttaattcctggagctattgcctattaccttgttggccttcagaagagctttgaccacttcgcttattttgcattggttctatttgtgtgtctgatgttggttgagagcctgatgatgattgtagcaagcactgtgccagatttcctcatggggatcatcacgggtgctggaattcaaggaataatgatgttgaatggaggtttcttccgtttaccagacgatcttccgaagcccttttggagatacccaatgtactacattgcattccacaaatacgcaaatcaaggattctacaagaatgagtttgaaggacttacatttcccaataaccaagcaggagggccacccaccattacaggtgaagaaatattaaagggtacttggcaagtggagatgggctattctaagtgggttgatcttgctattttgttgggaatg

Protein Analysis

180

Amino Acids

20.24

Weight (kDa)

5.87

Isoelectric Point (pI)

21.7

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000287)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g20390 FvH4_1g20390 FvH4_1g20390 FvH4_1g20390 FvH4_1g20390 FvH4_1g20400 FvH4_1g20400 FvH4_1g20400 FvH4_1g20400 FvH4_1g20400 FvH4_1g20410 FvH4_1g20410 FvH4_6g39250 FvH4_6g39250
malus_domestica MD00G1036800.v1.1 MD05G1042600.v1.1 MD10G1049900.v1.1
prunus_persica Prupe.6G191500_v2.0.a1 Prupe.8G064300_v2.0.a1 Prupe.8G064300_v2.0.a1 Prupe.8G064400_v2.0.a1
pyrus_communis pycom05g03520 pycom10g03500 pycom10g03510 pycom15g28250
rosa_chinensis RchiOBHm_Chr1g0336561 RchiOBHm_Chr2g0112551 RchiOBHm_Chr2g0112561 RchiOBHm_Chr2g0112631 RchiOBHm_Chr2g0112641 RchiOBHm_Chr2g0153091 RchiOBHm_Chr2g0153111 RchiOBHm_Chr2g0153141 RchiOBHm_Chr2g0153161 RchiOBHm_Chr2g0153171
rosa_laevigata RLG00000017991 RLG00000017992 RLG00000017995 RLG00000017997 RLG00000020676 RLG00000020677 RLG00000020678 RLG00000020682
rosa_multiflora Rmu_co8208234.1_g000001 Rmu_co8218328.1_g000001 Rmu_co8425243.1_g000001 Rmu_sc0000218.1_g000037 Rmu_sc0000218.1_g000044 Rmu_sc0000218.1_g000047 Rmu_sc0000218.1_g000052 Rmu_sc0001155.1_g000011 Rmu_sc0001155.1_g000026 Rmu_sc0001155.1_g000029 Rmu_sc0001499.1_g000001 Rmu_sc0001499.1_g000040 Rmu_sc0002401.1_g000032 Rmu_sc0002401.1_g000033 Rmu_sc0004070.1_g000003 Rmu_sc0004070.1_g000004 Rmu_sc0005547.1_g000001 Rmu_sc0006062.1_g000002 Rmu_sc0009780.1_g000005 Rmu_sc0013071.1_g000001 Rmu_sc0013071.1_g000012
rosa_roxburghii Rroxscaffold_2G00095130 Rroxscaffold_2G00095140 Rroxscaffold_2G00095160 Rroxscaffold_2G00095180 Rroxscaffold_2G00095190 Rroxscaffold_2G00095200 Rroxscaffold_2G00131290 Rroxscaffold_2G00131320 Rroxscaffold_2G00131350
rosa_rugosa Rorug02G0181500 Rorug02G0181500 Rorug02G0181600 Rorug02G0181700 Rorug02G0437300 Rorug02G0437400
rosa_samantha Rh1DG154100 Rh2AG235200 Rh2AG235300 Rh2AG235400 Rh2AG235600 Rh2AG235800 Rh2AG499700 Rh2AG499800 Rh2AG500000 Rh2AG500100 Rh2AG500200 Rh2BG248500 Rh2BG248700 Rh2BG248800 Rh2BG511000 Rh2BG511200 Rh2BG511300 Rh2BG511600 Rh2CG239600 Rh2CG239700 Rh2CG239900 Rh2CG240000 Rh2CG485900 Rh2CG486000 Rh2CG486200 Rh2CG486300 Rh2CG486400 Rh2DG242500 Rh2DG242600 Rh2DG242700 Rh2DG242900 Rh2DG243100 Rh2DG522800 Rh2DG523100 Rh2DG523200 Rh2DG523500 Rh2DG523600 Rh5DG200200
rosa_wichuraiana Rw2G018200 Rw2G018210 Rw2G018230 Rw2G018240 Rw2G041010 Rw2G041020 Rw2G041030 Rw2G041050

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 1 cut(s) 263
AcsI RAATTY 1 cut(s) 273
AcuI CTGAAG 1 cut(s) 125
AfaI GTAC 2 cut(s) 356, 481
AgsI TTSAA 3 cut(s) 278, 295, 410
AjnI CCWGG 1 cut(s) 109
AluBI AGCT 2 cut(s) 116, 150
AluI AGCT 2 cut(s) 116, 150
AlwI GGATC 1 cut(s) 263
AoxI GGCC 2 cut(s) 136, 443
ApeKI GCWGC 1 cut(s) 47
ApoI RAATTY 1 cut(s) 273
Asp700I GAANNNNTTC 1 cut(s) 8
AspS9I GGNCC 1 cut(s) 443
AsuHPI GGTGA 1 cut(s) 473
BaeGI GKGCMC 1 cut(s) 36
BbvI GCAGC 1 cut(s) 34
BccI CCATC 1 cut(s) 490
BciT130I CCWGG 1 cut(s) 111
BisI GCNGC 1 cut(s) 48
BlsI GCNGC 1 cut(s) 49
Bme1390I CCNGG 1 cut(s) 111
BmgT120I GGNCC 1 cut(s) 443
BmrFI CCNGG 1 cut(s) 111
BpmI CTGGAG 1 cut(s) 132
Bse3DI GCAATG 1 cut(s) 360
BseBI CCWGG 1 cut(s) 111
BseMI GCAATG 1 cut(s) 360
BseSI GKGCMC 1 cut(s) 36
BseXI GCAGC 1 cut(s) 34
BshFI GGCC 2 cut(s) 138, 445
BsmI GAATGC 1 cut(s) 365
BsnI GGCC 2 cut(s) 138, 445
Bsp1286I GDGCHC 1 cut(s) 36
Bsp143I GATC 3 cut(s) 255, 322, 517
BspANI GGCC 2 cut(s) 138, 445
BspPI GGATC 1 cut(s) 263
BspQI GCTCTTC 1 cut(s) 140
BsrDI GCAATG 1 cut(s) 360
BssMI GATC 3 cut(s) 255, 322, 517
Bst2UI CCWGG 1 cut(s) 111
Bst4CI ACNGT 1 cut(s) 235
Bst6I CTCTTC 1 cut(s) 140
BstC8I GCNNGC 1 cut(s) 229
BstDEI CTNAG 1 cut(s) 507
BstKTI GATC 3 cut(s) 258, 325, 520
BstMBI GATC 3 cut(s) 255, 322, 517
BstMWI GCNNNNNNNGC 1 cut(s) 170
BstNI CCWGG 1 cut(s) 111
BstSCI CCNGG 1 cut(s) 109
BstSLI GKGCMC 1 cut(s) 36
BstV1I GCAGC 1 cut(s) 34
BsuRI GGCC 2 cut(s) 138, 445
BtsIMutI CAGTG 1 cut(s) 231
Cac8I GCNNGC 1 cut(s) 229
Cfr13I GGNCC 1 cut(s) 443
Csp6I GTAC 2 cut(s) 355, 480
CviAII CATG 1 cut(s) 250
CviJI RGCY 7 cut(s) 116, 138, 150, 210, 334, 445, 501
CviKI_1 RGCY 7 cut(s) 116, 138, 150, 210, 334, 445, 501
CviQI GTAC 2 cut(s) 355, 480
DdeI CTNAG 1 cut(s) 507
DpnI GATC 3 cut(s) 257, 324, 519
DpnII GATC 3 cut(s) 255, 322, 517
Eam1104I CTCTTC 1 cut(s) 140
EarI CTCTTC 1 cut(s) 140
Eco57I CTGAAG 1 cut(s) 125
EcoRI GAATTC 1 cut(s) 273
EcoRII CCWGG 1 cut(s) 109
FaeI CATG 1 cut(s) 253
FaiI YATR 5 cut(s) 39, 52, 54, 85, 251
FatI CATG 1 cut(s) 249
FauNDI CATATG 1 cut(s) 52
Fnu4HI GCNGC 1 cut(s) 48
Fsp4HI GCNGC 1 cut(s) 48
GluI GCNGC 1 cut(s) 48
GsuI CTGGAG 1 cut(s) 132
HaeIII GGCC 2 cut(s) 138, 445
Hin1II CATG 1 cut(s) 253
HinfI GANTC 1 cut(s) 390
HphI GGTGA 1 cut(s) 473
Hpy166II GTNNAC 1 cut(s) 314
Hpy188I TCNGA 3 cut(s) 144, 195, 330
Hpy8I GTNNAC 1 cut(s) 314
HpyAV CCTTC 2 cut(s) 149, 404
HpyCH4III ACNGT 1 cut(s) 235
HpyCH4V TGCA 3 cut(s) 50, 173, 365
HpyF10VI GCNNNNNNNGC 1 cut(s) 170
HpyF3I CTNAG 1 cut(s) 507
Hsp92II CATG 1 cut(s) 253
Kzo9I GATC 3 cut(s) 255, 322, 517
LguI GCTCTTC 1 cut(s) 140
LmnI GCTCC 1 cut(s) 113
LpnPI CCDG 8 cut(s) 96, 123, 224, 252, 255, 330, 423, 444
Lsp1109I GCAGC 1 cut(s) 34
MalI GATC 3 cut(s) 257, 324, 519
MboI GATC 3 cut(s) 255, 322, 517
MboII GAAGA 5 cut(s) 16, 157, 298, 317, 476
MhlI GDGCHC 1 cut(s) 36
MluCI AATT 2 cut(s) 105, 273
MmeI TCCRAC 1 cut(s) 40
MnlI CCTC 4 cut(s) 85, 257, 293, 434
MroXI GAANNNNTTC 1 cut(s) 8
MseI TTAA 3 cut(s) 26, 104, 473
MspR9I CCNGG 1 cut(s) 111
Mva1269I GAATGC 1 cut(s) 365
MvaI CCWGG 1 cut(s) 111
MwoI GCNNNNNNNGC 1 cut(s) 170
NdeI CATATG 1 cut(s) 52
NdeII GATC 3 cut(s) 255, 322, 517
NlaIII CATG 1 cut(s) 253
PciSI GCTCTTC 1 cut(s) 140
PctI GAATGC 1 cut(s) 365
PdmI GAANNNNTTC 1 cut(s) 8
PfeI GAWTC 1 cut(s) 390
PfoI TCCNGGA 1 cut(s) 109
PkrI GCNGC 1 cut(s) 49
Psp6I CCWGG 1 cut(s) 109
PspGI CCWGG 1 cut(s) 109
PspPI GGNCC 1 cut(s) 443
RsaI GTAC 2 cut(s) 356, 481
RsaNI GTAC 2 cut(s) 355, 480
SapI GCTCTTC 1 cut(s) 140
SaqAI TTAA 3 cut(s) 26, 104, 473
SatI GCNGC 1 cut(s) 48
Sau3AI GATC 3 cut(s) 255, 322, 517
Sau96I GGNCC 1 cut(s) 443
ScrFI CCNGG 1 cut(s) 111
SduI GDGCHC 1 cut(s) 36
SetI ASST 5 cut(s) 118, 132, 152, 304, 463
Sse9I AATT 2 cut(s) 105, 273
SspI AATATT 1 cut(s) 471
StyD4I CCNGG 1 cut(s) 109
TaaI ACNGT 1 cut(s) 235
TaqI TCGA 1 cut(s) 12
TasI AATT 2 cut(s) 105, 273
TatI WGTACW 1 cut(s) 354
TfiI GAWTC 1 cut(s) 390
Tru1I TTAA 3 cut(s) 26, 104, 473
Tru9I TTAA 3 cut(s) 26, 104, 473
TscAI CASTG 1 cut(s) 238
TseI GCWGC 1 cut(s) 47
TspDTI ATGAA 1 cut(s) 17
TspGWI ACGGA 1 cut(s) 299
TspRI CASTG 1 cut(s) 238
XapI RAATTY 1 cut(s) 273
XmnI GAANNNNTTC 1 cut(s) 8
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.