Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0006062.1

Orthogroup ID

OG0000287

Physical Location & Seq

Genomic Coordinates Forward (+)

3913 .. 7434

Gene Structure 3522 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0006062.1_g000002.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1131 bp

atgtggcaagaattggcttgcaaagattatctgaactcccatgatcgtagtcatcagggggagacgcagacatcagggggagatgtctacatgttcacctcgaaacgtgaagggtgtgttgtgctctttttccccttcgaccgaggttatttttgtcccactgggtttttgttactcggcaagcaagttcatctcaaggtaaatgagatttgccaacagggaggtggagctctggagaagggacgccaaaccaacttcataactcaatgcctggttttgacaaggagatcatttgtgaacatgtatcgcgatctaggctactactggcttcgacttgcaatttacattgccttgtgcttatgtgtagggactatttttcacgacatcggcttgacttttgggtcaatacaggctagaggatcaatgctcatgtttgttgcagcattcttaactttcatggcaataggtggatttccttcttttgtagaagacatgaagattttcgagcgtgaaagattaaacgggcactatggcgttgctgcatatgtggttggaaacacactttcctccattccatatttgctaatggtatctttaattcctggagctattgcctattaccttgttggccttcagaagagctttgaccacttcgcttattttgcattggttctatttgtgtgtctgatgttggttgagagcctgatgatgattgtagcaagcactgtgccagatttcctcatggggatcatcacgggtgctggaattcaaggaataatgatgttgaatggaggtttcttccgtttaccagacgatcttccgaagcccttttggagatacccaatgtactacattgcattccacaaatacgcaaatcaaggattctacaagaatgagtttgaaggacttacatttcccaataaccaagcaggagggccacccaccattacaggtgaagaaatattaaagggtacttggcaagtggagatgggctattctaagtgggttgatcttgccattttgttgggaatggtaattgtttacaggctcatttttttgggaataataaagataagtgaaaaggttgtgccaattatcaaagctgttcttgttggtgttcccaaacactga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0001101 GO:0003002 GO:0003006 GO:0003674 GO:0003824 GO:0005215 GO:0005319 GO:0005342 GO:0005488 GO:0005515 GO:0005575 GO:0005623 GO:0005886 GO:0006810 GO:0006811 GO:0006820 GO:0006869 GO:0006950 GO:0006970 GO:0007275 GO:0007389 GO:0008028 GO:0008150 GO:0008509 GO:0008514 GO:0009611 GO:0009628 GO:0009651 GO:0009653 GO:0009719 GO:0009725 GO:0009737 GO:0009790 GO:0009791 GO:0009793 GO:0009897 GO:0009965 GO:0009986 GO:0010016 GO:0010033 GO:0010051 GO:0010154 GO:0010222 GO:0010588 GO:0010876 GO:0015075 GO:0015245 GO:0015318 GO:0015399 GO:0015405 GO:0015711 GO:0015718 GO:0015849 GO:0015908 GO:0016020 GO:0016021 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0022414 GO:0022804 GO:0022857 GO:0031224 GO:0032501 GO:0032502 GO:0033036 GO:0033993 GO:0034220 GO:0042221 GO:0042623 GO:0042626 GO:0042802 GO:0042803 GO:0043492 GO:0044425 GO:0044459 GO:0044464 GO:0046942 GO:0046943 GO:0046983 GO:0048316 GO:0048366 GO:0048367 GO:0048598 GO:0048608 GO:0048731 GO:0048825 GO:0048826 GO:0048827 GO:0048856 GO:0050896 GO:0051179 GO:0051234 GO:0055085 GO:0061458 GO:0071702 GO:0071944 GO:0080051 GO:0090698 GO:0097305 GO:0098552 GO:0098656 GO:0099402 GO:1901700 GO:1903825 GO:1905039 GO:1905392

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

ABC2_membrane ABC_tran

Protein Analysis

376

Amino Acids

42.32

Weight (kDa)

8.31

Isoelectric Point (pI)

26.73

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000287)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g20390 FvH4_1g20390 FvH4_1g20390 FvH4_1g20390 FvH4_1g20390 FvH4_1g20400 FvH4_1g20400 FvH4_1g20400 FvH4_1g20400 FvH4_1g20400 FvH4_1g20410 FvH4_1g20410 FvH4_6g39250 FvH4_6g39250
malus_domestica	MD00G1036800.v1.1 MD05G1042600.v1.1 MD10G1049900.v1.1
prunus_persica	Prupe.6G191500_v2.0.a1 Prupe.8G064300_v2.0.a1 Prupe.8G064300_v2.0.a1 Prupe.8G064400_v2.0.a1
pyrus_communis	pycom05g03520 pycom10g03500 pycom10g03510 pycom15g28250
rosa_chinensis	RchiOBHm_Chr1g0336561 RchiOBHm_Chr2g0112551 RchiOBHm_Chr2g0112561 RchiOBHm_Chr2g0112631 RchiOBHm_Chr2g0112641 RchiOBHm_Chr2g0153091 RchiOBHm_Chr2g0153111 RchiOBHm_Chr2g0153141 RchiOBHm_Chr2g0153161 RchiOBHm_Chr2g0153171
rosa_laevigata	RLG00000017991 RLG00000017992 RLG00000017995 RLG00000017997 RLG00000020676 RLG00000020677 RLG00000020678 RLG00000020682
rosa_multiflora	Rmu_co8208234.1_g000001 Rmu_co8218328.1_g000001 Rmu_co8425243.1_g000001 Rmu_sc0000218.1_g000037 Rmu_sc0000218.1_g000044 Rmu_sc0000218.1_g000047 Rmu_sc0000218.1_g000052 Rmu_sc0001155.1_g000011 Rmu_sc0001155.1_g000026 Rmu_sc0001155.1_g000029 Rmu_sc0001499.1_g000001 Rmu_sc0001499.1_g000040 Rmu_sc0002401.1_g000032 Rmu_sc0002401.1_g000033 Rmu_sc0004070.1_g000003 Rmu_sc0004070.1_g000004 Rmu_sc0005547.1_g000001 Rmu_sc0006062.1_g000002 Rmu_sc0009780.1_g000005 Rmu_sc0013071.1_g000001 Rmu_sc0013071.1_g000012
rosa_roxburghii	Rroxscaffold_2G00095130 Rroxscaffold_2G00095140 Rroxscaffold_2G00095160 Rroxscaffold_2G00095180 Rroxscaffold_2G00095190 Rroxscaffold_2G00095200 Rroxscaffold_2G00131290 Rroxscaffold_2G00131320 Rroxscaffold_2G00131350
rosa_rugosa	Rorug02G0181500 Rorug02G0181500 Rorug02G0181600 Rorug02G0181700 Rorug02G0437300 Rorug02G0437400
rosa_samantha	Rh1DG154100 Rh2AG235200 Rh2AG235300 Rh2AG235400 Rh2AG235600 Rh2AG235800 Rh2AG499700 Rh2AG499800 Rh2AG500000 Rh2AG500100 Rh2AG500200 Rh2BG248500 Rh2BG248700 Rh2BG248800 Rh2BG511000 Rh2BG511200 Rh2BG511300 Rh2BG511600 Rh2CG239600 Rh2CG239700 Rh2CG239900 Rh2CG240000 Rh2CG485900 Rh2CG486000 Rh2CG486200 Rh2CG486300 Rh2CG486400 Rh2DG242500 Rh2DG242600 Rh2DG242700 Rh2DG242900 Rh2DG243100 Rh2DG522800 Rh2DG523100 Rh2DG523200 Rh2DG523500 Rh2DG523600 Rh5DG200200
rosa_wichuraiana	Rw2G018200 Rw2G018210 Rw2G018230 Rw2G018240 Rw2G041010 Rw2G041020 Rw2G041030 Rw2G041050

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	400
AccI	GTMKAC	1 cut(s)	87
AccII	CGCG	1 cut(s)	309
AclWI	GGATC	2 cut(s)	427, 755
AcsI	RAATTY	1 cut(s)	765
AcuI	CTGAAG	1 cut(s)	617
AcyI	GRCGYC	1 cut(s)	244
AfaI	GTAC	2 cut(s)	848, 973
AflIII	ACRYGT	2 cut(s)	90, 300
AgsI	TTSAA	3 cut(s)	770, 787, 902
AjnI	CCWGG	2 cut(s)	270, 601
AluBI	AGCT	4 cut(s)	230, 608, 642, 1103
AluI	AGCT	4 cut(s)	230, 608, 642, 1103
Alw21I	GWGCWC	2 cut(s)	126, 232
Alw26I	GTCTC	1 cut(s)	56
AlwI	GGATC	2 cut(s)	427, 755
AoxI	GGCC	2 cut(s)	628, 935
ApeKI	GCWGC	2 cut(s)	440, 539
ApoI	RAATTY	1 cut(s)	765
Asp700I	GAANNNNTTC	1 cut(s)	500
AspS9I	GGNCC	1 cut(s)	935
AsuHPI	GGTGA	2 cut(s)	88, 965
BaeGI	GKGCMC	1 cut(s)	528
BanII	GRGCYC	1 cut(s)	232
BbsI	GAAGAC	1 cut(s)	495
Bbv12I	GWGCWC	2 cut(s)	126, 232
BbvI	GCAGC	2 cut(s)	452, 526
BccI	CCATC	1 cut(s)	982
BciT130I	CCWGG	2 cut(s)	272, 603
BcoDI	GTCTC	1 cut(s)	56
BfaI	CTAG	2 cut(s)	314, 414
BisI	GCNGC	2 cut(s)	441, 540
BlsI	GCNGC	2 cut(s)	442, 541
Bme1390I	CCNGG	2 cut(s)	272, 603
BmgT120I	GGNCC	1 cut(s)	935
BmrFI	CCNGG	2 cut(s)	272, 603
BmrI	ACTGGG	1 cut(s)	171
BmuI	ACTGGG	1 cut(s)	171
BpiI	GAAGAC	1 cut(s)	495
BpmI	CTGGAG	2 cut(s)	254, 624
BpuEI	CTTGAG	1 cut(s)	179
BsaHI	GRCGYC	1 cut(s)	244
BsaJI	CCNNGG	1 cut(s)	142
Bse1I	ACTGG	2 cut(s)	166, 329
Bse3DI	GCAATG	2 cut(s)	345, 852
BseBI	CCWGG	2 cut(s)	272, 603
BseDI	CCNNGG	1 cut(s)	142
BseMI	GCAATG	2 cut(s)	345, 852
BseNI	ACTGG	2 cut(s)	166, 329
BseSI	GKGCMC	1 cut(s)	528
BseXI	GCAGC	2 cut(s)	452, 526
Bsh1236I	CGCG	1 cut(s)	309
Bsh1285I	CGRYCG	1 cut(s)	142
BshFI	GGCC	2 cut(s)	630, 937
BsiEI	CGRYCG	1 cut(s)	142
BsiHKAI	GWGCWC	2 cut(s)	126, 232
BslFI	GGGAC	3 cut(s)	141, 255, 382
BsmAI	GTCTC	1 cut(s)	56
BsmBI	CGTCTC	1 cut(s)	56
BsmFI	GGGAC	3 cut(s)	141, 255, 382
BsmI	GAATGC	2 cut(s)	443, 857
BsnI	GGCC	2 cut(s)	630, 937
Bsp1286I	GDGCHC	3 cut(s)	126, 232, 528
Bsp143I	GATC	7 cut(s)	43, 287, 310, 419, 747, 814, 1009
Bsp68I	TCGCGA	1 cut(s)	309
BspANI	GGCC	2 cut(s)	630, 937
BspFNI	CGCG	1 cut(s)	309
BspPI	GGATC	2 cut(s)	427, 755
BspQI	GCTCTTC	1 cut(s)	632
BsrDI	GCAATG	2 cut(s)	345, 852
BsrI	ACTGG	2 cut(s)	166, 329
BssECI	CCNNGG	1 cut(s)	142
BssMI	GATC	7 cut(s)	43, 287, 310, 419, 747, 814, 1009
BssNI	GRCGYC	1 cut(s)	244
Bst2UI	CCWGG	2 cut(s)	272, 603
Bst4CI	ACNGT	1 cut(s)	727
Bst6I	CTCTTC	1 cut(s)	632
BstACI	GRCGYC	1 cut(s)	244
BstC8I	GCNNGC	3 cut(s)	19, 182, 721
BstDEI	CTNAG	1 cut(s)	999
BstFNI	CGCG	1 cut(s)	309
BstKTI	GATC	7 cut(s)	46, 290, 313, 422, 750, 817, 1012
BstMAI	GTCTC	1 cut(s)	56
BstMBI	GATC	7 cut(s)	43, 287, 310, 419, 747, 814, 1009
BstMCI	CGRYCG	1 cut(s)	142
BstMWI	GCNNNNNNNGC	2 cut(s)	315, 662
BstNI	CCWGG	2 cut(s)	272, 603
BstNSI	RCATGY	2 cut(s)	94, 304
BstSCI	CCNGG	2 cut(s)	270, 601
BstSLI	GKGCMC	1 cut(s)	528
BstUI	CGCG	1 cut(s)	309
BstV1I	GCAGC	2 cut(s)	452, 526
BstV2I	GAAGAC	1 cut(s)	495
BstXI	CCANNNNNNTGG	1 cut(s)	1024
BsuRI	GGCC	2 cut(s)	630, 937
BtsIMutI	CAGTG	3 cut(s)	159, 723, 1126
BtuMI	TCGCGA	1 cut(s)	309
Cac8I	GCNNGC	3 cut(s)	19, 182, 721
Cfr13I	GGNCC	1 cut(s)	935
CseI	GACGC	2 cut(s)	73, 252
Csp6I	GTAC	2 cut(s)	847, 972
CviAII	CATG	7 cut(s)	41, 91, 301, 430, 457, 493, 742
CviQI	GTAC	2 cut(s)	847, 972
DdeI	CTNAG	1 cut(s)	999
DpnI	GATC	7 cut(s)	45, 289, 312, 421, 749, 816, 1011
DpnII	GATC	7 cut(s)	43, 287, 310, 419, 747, 814, 1009
DrdI	GACNNNNNNGTC	1 cut(s)	400
DseDI	GACNNNNNNGTC	1 cut(s)	400
Eam1104I	CTCTTC	1 cut(s)	632
EarI	CTCTTC	1 cut(s)	632
Ecl136II	GAGCTC	1 cut(s)	230
Eco24I	GRGCYC	1 cut(s)	232
Eco53kI	GAGCTC	1 cut(s)	230
Eco57I	CTGAAG	1 cut(s)	617
EcoICRI	GAGCTC	1 cut(s)	230
EcoRI	GAATTC	1 cut(s)	765
EcoRII	CCWGG	2 cut(s)	270, 601
EcoT38I	GRGCYC	1 cut(s)	232
Esp3I	CGTCTC	1 cut(s)	56
FaeI	CATG	7 cut(s)	44, 94, 304, 433, 460, 496, 745
FalI	AAGNNNNNCTT	2 cut(s)	1092, 1124
FaqI	GGGAC	3 cut(s)	141, 255, 382
FatI	CATG	7 cut(s)	40, 90, 300, 429, 456, 492, 741
FauNDI	CATATG	1 cut(s)	544
FblI	GTMKAC	1 cut(s)	87
Fnu4HI	GCNGC	2 cut(s)	441, 540
FriOI	GRGCYC	1 cut(s)	232
Fsp4HI	GCNGC	2 cut(s)	441, 540
FspBI	CTAG	2 cut(s)	314, 414
GluI	GCNGC	2 cut(s)	441, 540
GsuI	CTGGAG	2 cut(s)	254, 624
HaeIII	GGCC	2 cut(s)	630, 937
HgaI	GACGC	2 cut(s)	73, 252
Hin1I	GRCGYC	1 cut(s)	244
Hin1II	CATG	7 cut(s)	44, 94, 304, 433, 460, 496, 745
HinfI	GANTC	1 cut(s)	882
HphI	GGTGA	2 cut(s)	88, 965
Hpy166II	GTNNAC	5 cut(s)	88, 96, 298, 806, 1042
Hpy188I	TCNGA	4 cut(s)	33, 636, 687, 822
Hpy188III	TCNNGA	3 cut(s)	233, 308, 380
Hpy8I	GTNNAC	5 cut(s)	88, 96, 298, 806, 1042
HpyAV	CCTTC	6 cut(s)	104, 145, 232, 486, 641, 896
HpyCH4III	ACNGT	1 cut(s)	727
HpyCH4IV	ACGT	1 cut(s)	106
HpyCH4V	TGCA	6 cut(s)	21, 338, 440, 542, 665, 857
HpyF10VI	GCNNNNNNNGC	2 cut(s)	315, 662
HpyF3I	CTNAG	1 cut(s)	999
HpySE526I	ACGT	1 cut(s)	106
Hsp92I	GRCGYC	1 cut(s)	244
Hsp92II	CATG	7 cut(s)	44, 94, 304, 433, 460, 496, 745
Kzo9I	GATC	7 cut(s)	43, 287, 310, 419, 747, 814, 1009
LguI	GCTCTTC	1 cut(s)	632
LmnI	GCTCC	2 cut(s)	227, 605
Lsp1109I	GCAGC	2 cut(s)	452, 526
MaeI	CTAG	2 cut(s)	314, 414
MaeII	ACGT	1 cut(s)	106
MaeIII	GTNAC	1 cut(s)	171
MalI	GATC	7 cut(s)	45, 289, 312, 421, 749, 816, 1011
MboI	GATC	7 cut(s)	43, 287, 310, 419, 747, 814, 1009
MboII	GAAGA	6 cut(s)	500, 508, 649, 790, 809, 968
MhlI	GDGCHC	3 cut(s)	126, 232, 528
MluCI	AATT	6 cut(s)	11, 339, 597, 765, 1035, 1092
MmeI	TCCRAC	1 cut(s)	532
MnlI	CCTC	8 cut(s)	109, 137, 215, 410, 577, 749, 785, 926
MroXI	GAANNNNTTC	1 cut(s)	500
MseI	TTAA	4 cut(s)	449, 518, 596, 965
MspR9I	CCNGG	2 cut(s)	272, 603
Mva1269I	GAATGC	2 cut(s)	443, 857
MvaI	CCWGG	2 cut(s)	272, 603
MvnI	CGCG	1 cut(s)	309
MwoI	GCNNNNNNNGC	2 cut(s)	315, 662
NdeI	CATATG	1 cut(s)	544
NdeII	GATC	7 cut(s)	43, 287, 310, 419, 747, 814, 1009
NlaIII	CATG	7 cut(s)	44, 94, 304, 433, 460, 496, 745
NmeAIII	GCCGAG	1 cut(s)	156
NruI	TCGCGA	1 cut(s)	309
NspI	RCATGY	2 cut(s)	94, 304
PciI	ACATGT	2 cut(s)	90, 300
PciSI	GCTCTTC	1 cut(s)	632
PctI	GAATGC	2 cut(s)	443, 857
PdmI	GAANNNNTTC	1 cut(s)	500
PfeI	GAWTC	1 cut(s)	882
PfoI	TCCNGGA	1 cut(s)	601
PkrI	GCNGC	2 cut(s)	442, 541
PscI	ACATGT	2 cut(s)	90, 300
Psp124BI	GAGCTC	1 cut(s)	232
Psp6I	CCWGG	2 cut(s)	270, 601
PspGI	CCWGG	2 cut(s)	270, 601
PspPI	GGNCC	1 cut(s)	935
RruI	TCGCGA	1 cut(s)	309
RsaI	GTAC	2 cut(s)	848, 973
RsaNI	GTAC	2 cut(s)	847, 972
SacI	GAGCTC	1 cut(s)	232
SapI	GCTCTTC	1 cut(s)	632
SaqAI	TTAA	4 cut(s)	449, 518, 596, 965
SatI	GCNGC	2 cut(s)	441, 540
Sau3AI	GATC	7 cut(s)	43, 287, 310, 419, 747, 814, 1009
Sau96I	GGNCC	1 cut(s)	935
ScrFI	CCNGG	2 cut(s)	272, 603
SduI	GDGCHC	3 cut(s)	126, 232, 528
SmlI	CTYRAG	1 cut(s)	194
SmoI	CTYRAG	1 cut(s)	194
Sse9I	AATT	6 cut(s)	11, 339, 597, 765, 1035, 1092
SspI	AATATT	1 cut(s)	963
SspMI	CTAG	2 cut(s)	314, 414
SstI	GAGCTC	1 cut(s)	232
StyD4I	CCNGG	2 cut(s)	270, 601
TaaI	ACNGT	1 cut(s)	727
TaiI	ACGT	1 cut(s)	109
TaqI	TCGA	4 cut(s)	101, 138, 331, 504
TaqII	GACCGA	1 cut(s)	156
TasI	AATT	6 cut(s)	11, 339, 597, 765, 1035, 1092
TatI	WGTACW	1 cut(s)	846
TfiI	GAWTC	1 cut(s)	882
Tru1I	TTAA	4 cut(s)	449, 518, 596, 965
Tru9I	TTAA	4 cut(s)	449, 518, 596, 965
TscAI	CASTG	2 cut(s)	166, 730
TseI	GCWGC	2 cut(s)	440, 539
TspDTI	ATGAA	4 cut(s)	179, 247, 445, 509
TspGWI	ACGGA	1 cut(s)	791
TspRI	CASTG	2 cut(s)	166, 730
XapI	RAATTY	1 cut(s)	765
XceI	RCATGY	2 cut(s)	94, 304
XcmI	CCANNNNNNNNNTGG	1 cut(s)	221
XmiI	GTMKAC	1 cut(s)	87
XmnI	GAANNNNTTC	1 cut(s)	500
XspI	CTAG	2 cut(s)	314, 414

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.