pycom16g15520

Belongs to the peptidase A1 family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr16
OG0000716
Physical Location & Seq
Reverse (-)
11474744 .. 11475978
1235 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 1137 bp
ATGGCTTCCTCCTCATTTCATTGCCTTCTCTTTTGCTCATCACTCTTCCACTTCTTCGTTGTCCCTTCACTTGCCAAAACTGCCTCTTTCAGACCAAAAGCCCTTGTTCTTCCGGTGGCAAAAGACTCCTCTACCTTCCAATACCTCACCACCTTCAGCCAAAGAACCCCTTTTGTAGCCATAAAACTCACAGTTGATCTTGGTGGTCGGTACCTTTGGGAGTGCTACTCTTCCCCTAAGCCAGGCTGCAACAACACATGTGCTCTCTCCCCCGGTAACACCATCACCCGCACCTCCACAAGCGGCGACCTTGGTCAAGACACTGTGTCCCTACAATCCACAGATGGGTCTAATCCAGGTAGGCTGGTCTCTGTCCCCAACCTACTCTTCACTTGCGGTCCCACATTTCTGTTGGAAGGCCTAGCGAGTGGTGTCAAGGGAATGGCTGGCCTCGGCAGGGATAAAATCGGGCTTCCCTCTCAATTTGCTTCCGCCTTTAGCCTCCCCCGAAAGTTTGCAATTTGTTTGAGCTCTTCATCGAAGTCTAGTGGCGTTGTGATCTTCGGGGACAGGCCTTATACTCTCTTTCCCAATATTGAGGTGTCCAAGTCACTTACTTTCACTCCATTGATCATCAACCCTGTCAGCACAGCCGGTGCTTATTTTCAAGGCGAGCCTTCGGTGGGGTACTTCATCAATGTGAAGTCGATTAAGGTCAATGGAAAGGTTGTTGCTTTGAATACTTCATTGCTGGCCATTGACAATGAAGGGTATGGCGGCACGAACATTAGTACGGTGAATCCGTACACGGTTTTGGAGACCTCAATCTACAACGCAGTTGTGAATGCATTTGTGAAAGAAGTTGCCTATAAAATCCCAAGAGTGAAAGCAGTAGCGCCTTTCAGAACATGCTTCAGTTCGAAGAACATCGGTGTTACAAGGGTTGGGCATTCTGTGCCTTCAATTGATCTCGTGTTGCAGAGCGAGAGTGTATATTGGACAATGTTCGGAGCAAATTCAATGGTGTATGTGAGCAATGATGTCTTGTGTTTAGGGTTTGCGGATGGAGGTGAGAGGCCAAGGACTTCTATTGTGATTGGAGGTAGTCTTCCTGGTATTATGATAGTCTATCAATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
TAXi_C TAXi_N

Protein Analysis

379

Amino Acids

40.32

Weight (kDa)

9.15

Isoelectric Point (pI)

34.18

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
TAXi_N PF14543 76 - 190 3.8e-29 Xylanase inhibitor N-terminal
TAXi_C PF14541 230 - 369 3.3e-49 Xylanase inhibitor C-terminal
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 210
AccB1I GGYRCC 1 cut(s) 210
AciI CCGC 6 cut(s) 289, 303, 396, 492, 777, 1061
AcoI YGGCCR 1 cut(s) 753
AcsI RAATTY 1 cut(s) 1015
AcuI CTGAAG 2 cut(s) 139, 898
AfaI GTAC 4 cut(s) 212, 689, 793, 806
AfiI CCNNNNNNNGG 4 cut(s) 242, 345, 457, 683
AflIII ACRYGT 1 cut(s) 257
AgsI TTSAA 4 cut(s) 668, 739, 963, 1020
AhdI GACNNNNNGTC 1 cut(s) 325
AjnI CCWGG 3 cut(s) 241, 355, 1111
AjuI GAANNNNNNNTTGG 2 cut(s) 371, 403
AluBI AGCT 1 cut(s) 531
AluI AGCT 1 cut(s) 531
Alw21I GWGCWC 2 cut(s) 265, 533
Alw26I GTCTC 2 cut(s) 373, 812
AoxI GGCC 5 cut(s) 418, 448, 572, 753, 1076
ApeKI GCWGC 1 cut(s) 246
ApoI RAATTY 1 cut(s) 1015
Asp718I GGTACC 1 cut(s) 210
AspLEI GCGC 1 cut(s) 898
AspS9I GGNCC 1 cut(s) 398
AsuC2I CCSGG 1 cut(s) 273
AsuHPI GGTGA 4 cut(s) 139, 277, 808, 1082
AsuII TTCGAA 1 cut(s) 920
AvaII GGWCC 1 cut(s) 398
BalI TGGCCA 1 cut(s) 755
BanI GGYRCC 1 cut(s) 210
BanII GRGCYC 1 cut(s) 533
BauI CACGAG 1 cut(s) 971
BbsI GAAGAC 1 cut(s) 1100
Bbv12I GWGCWC 2 cut(s) 265, 533
BbvI GCAGC 1 cut(s) 233
BccI CCATC 3 cut(s) 290, 338, 1058
BciT130I CCWGG 3 cut(s) 243, 357, 1113
BclI TGATCA 1 cut(s) 630
BcnI CCSGG 1 cut(s) 273
BcoDI GTCTC 2 cut(s) 373, 812
BfaI CTAG 2 cut(s) 422, 546
BfoI RGCGCY 1 cut(s) 899
BisI GCNGC 3 cut(s) 247, 304, 778
BlsI GCNGC 3 cut(s) 248, 305, 779
Bme1390I CCNGG 4 cut(s) 243, 273, 357, 1113
Bme18I GGWCC 1 cut(s) 398
BmeRI GACNNNNNGTC 1 cut(s) 325
BmgT120I GGNCC 1 cut(s) 398
BmiI GGNNCC 2 cut(s) 212, 400
BmrFI CCNGG 4 cut(s) 243, 273, 357, 1113
BoxI GACNNNNGTC 1 cut(s) 312
BpiI GAAGAC 1 cut(s) 1100
BplI GAGNNNNNCTC 2 cut(s) 212, 244
Bpu10I CCTNAGC 1 cut(s) 237
Bpu14I TTCGAA 1 cut(s) 920
BpuMI CCSGG 1 cut(s) 273
BsaI GGTCTC 2 cut(s) 373, 812
BsaJI CCNNGG 4 cut(s) 271, 310, 451, 1079
BsaWI WCCGGW 1 cut(s) 112
BsaXI ACNNNNNCTCC 2 cut(s) 607, 637
Bsc4I CCNNNNNNNGG 4 cut(s) 242, 345, 457, 683
Bse118I RCCGGY 1 cut(s) 653
Bse3DI GCAATG 3 cut(s) 19, 746, 1042
BseBI CCWGG 3 cut(s) 243, 357, 1113
BseDI CCNNGG 4 cut(s) 271, 310, 451, 1079
BseGI GGATG 1 cut(s) 1069
BseLI CCNNNNNNNGG 4 cut(s) 242, 345, 457, 683
BseMI GCAATG 3 cut(s) 19, 746, 1042
BseRI GAGGAG 1 cut(s) 118
BseXI GCAGC 1 cut(s) 233
BshFI GGCC 5 cut(s) 420, 450, 574, 755, 1078
BshNI GGYRCC 1 cut(s) 210
BsiHKAI GWGCWC 2 cut(s) 265, 533
BsiSI CCGG 3 cut(s) 113, 273, 654
BslFI GGGAC 5 cut(s) 47, 313, 359, 384, 581
BslI CCNNNNNNNGG 4 cut(s) 242, 345, 457, 683
BsmAI GTCTC 2 cut(s) 373, 812
BsmFI GGGAC 5 cut(s) 47, 313, 359, 384, 581
BsmI GAATGC 2 cut(s) 850, 949
BsnI GGCC 5 cut(s) 420, 450, 574, 755, 1078
Bso31I GGTCTC 2 cut(s) 373, 812
Bsp119I TTCGAA 1 cut(s) 920
Bsp1286I GDGCHC 2 cut(s) 265, 533
Bsp143I GATC 4 cut(s) 196, 558, 630, 967
BspACI CCGC 6 cut(s) 289, 303, 396, 492, 777, 1061
BspANI GGCC 5 cut(s) 420, 450, 574, 755, 1078
BspLI GGNNCC 2 cut(s) 212, 400
BspQI GCTCTTC 1 cut(s) 538
BspT104I TTCGAA 1 cut(s) 920
BspT107I GGYRCC 1 cut(s) 210
BspTNI GGTCTC 2 cut(s) 373, 812
BsrDI GCAATG 3 cut(s) 19, 746, 1042
BsrFI RCCGGY 1 cut(s) 653
BssAI RCCGGY 1 cut(s) 653
BssECI CCNNGG 4 cut(s) 271, 310, 451, 1079
BssMI GATC 4 cut(s) 196, 558, 630, 967
BssSI CACGAG 1 cut(s) 971
BssT1I CCWWGG 2 cut(s) 310, 1079
Bst2BI CACGAG 1 cut(s) 971
Bst2UI CCWGG 3 cut(s) 243, 357, 1113
Bst4CI ACNGT 4 cut(s) 193, 325, 796, 811
Bst6I CTCTTC 4 cut(s) 50, 235, 392, 538
BstAPI GCANNNNNTGC 1 cut(s) 955
BstBI TTCGAA 1 cut(s) 920
BstC8I GCNNGC 3 cut(s) 448, 674, 753
BstDEI CTNAG 1 cut(s) 237
BstENI CCTNNNNNAGG 1 cut(s) 240
BstF5I GGATG 1 cut(s) 1069
BstH2I RGCGCY 1 cut(s) 899
BstHHI GCGC 1 cut(s) 898
BstKTI GATC 4 cut(s) 199, 561, 633, 970
BstMAI GTCTC 2 cut(s) 373, 812
BstMBI GATC 4 cut(s) 196, 558, 630, 967
BstMWI GCNNNNNNNGC 2 cut(s) 80, 955
BstNI CCWGG 3 cut(s) 243, 357, 1113
BstNSI RCATGY 2 cut(s) 261, 912
BstPAI GACNNNNGTC 1 cut(s) 312
BstSCI CCNGG 4 cut(s) 241, 271, 355, 1111
BstV1I GCAGC 1 cut(s) 233
BstV2I GAAGAC 1 cut(s) 1100
BsuRI GGCC 5 cut(s) 420, 450, 574, 755, 1078
BtsCI GGATG 1 cut(s) 1069
BtsIMutI CAGTG 1 cut(s) 321
Cac8I GCNNGC 3 cut(s) 448, 674, 753
CfoI GCGC 1 cut(s) 898
Cfr10I RCCGGY 1 cut(s) 653
Cfr13I GGNCC 1 cut(s) 398
Csp6I GTAC 4 cut(s) 211, 688, 792, 805
CviAII CATG 2 cut(s) 258, 909
CviQI GTAC 4 cut(s) 211, 688, 792, 805
DdeI CTNAG 1 cut(s) 237
DpnI GATC 4 cut(s) 198, 560, 632, 969
DpnII GATC 4 cut(s) 196, 558, 630, 967
DriI GACNNNNNGTC 1 cut(s) 325
EaeI YGGCCR 1 cut(s) 753
Eam1104I CTCTTC 4 cut(s) 50, 235, 392, 538
Eam1105I GACNNNNNGTC 1 cut(s) 325
EarI CTCTTC 4 cut(s) 50, 235, 392, 538
EciI GGCGGA 1 cut(s) 481
Ecl136II GAGCTC 1 cut(s) 531
Eco130I CCWWGG 2 cut(s) 310, 1079
Eco147I AGGCCT 2 cut(s) 420, 574
Eco24I GRGCYC 1 cut(s) 533
Eco31I GGTCTC 2 cut(s) 373, 812
Eco47I GGWCC 1 cut(s) 398
Eco53kI GAGCTC 1 cut(s) 531
Eco57I CTGAAG 2 cut(s) 139, 898
EcoICRI GAGCTC 1 cut(s) 531
EcoNI CCTNNNNNAGG 1 cut(s) 240
EcoRII CCWGG 3 cut(s) 241, 355, 1111
EcoT14I CCWWGG 2 cut(s) 310, 1079
EcoT22I ATGCAT 1 cut(s) 850
EcoT38I GRGCYC 1 cut(s) 533
ErhI CCWWGG 2 cut(s) 310, 1079
FaeI CATG 2 cut(s) 261, 912
FaiI YATR 9 cut(s) 182, 259, 579, 774, 870, 910, 994, 1029, 1121
FalI AAGNNNNNCTT 2 cut(s) 154, 186
FaqI GGGAC 5 cut(s) 47, 313, 359, 384, 581
FatI CATG 2 cut(s) 257, 908
FauI CCCGC 1 cut(s) 296
FbaI TGATCA 1 cut(s) 630
Fnu4HI GCNGC 3 cut(s) 247, 304, 778
FokI GGATG 1 cut(s) 1076
FriOI GRGCYC 1 cut(s) 533
Fsp4HI GCNGC 3 cut(s) 247, 304, 778
FspBI CTAG 2 cut(s) 422, 546
GlaI GCGC 1 cut(s) 897
GluI GCNGC 3 cut(s) 247, 304, 778
HaeII RGCGCY 1 cut(s) 899
HaeIII GGCC 5 cut(s) 420, 450, 574, 755, 1078
HapII CCGG 3 cut(s) 113, 273, 654
HhaI GCGC 1 cut(s) 898
Hin1II CATG 2 cut(s) 261, 912
Hin6I GCGC 1 cut(s) 896
HinP1I GCGC 1 cut(s) 896
HinfI GANTC 2 cut(s) 125, 799
HpaII CCGG 3 cut(s) 113, 273, 654
HphI GGTGA 4 cut(s) 139, 277, 808, 1082
Hpy166II GTNNAC 1 cut(s) 807
Hpy188I TCNGA 3 cut(s) 92, 905, 1010
Hpy188III TCNNGA 1 cut(s) 317
Hpy8I GTNNAC 1 cut(s) 807
HpyAV CCTTC 8 cut(s) 35, 75, 145, 163, 410, 687, 761, 969
HpyCH4III ACNGT 4 cut(s) 193, 325, 796, 811
HpyCH4V TGCA 4 cut(s) 249, 518, 848, 979
HpyF10VI GCNNNNNNNGC 2 cut(s) 80, 955
HpyF3I CTNAG 1 cut(s) 237
Hsp92II CATG 2 cut(s) 261, 912
HspAI GCGC 1 cut(s) 896
KpnI GGTACC 1 cut(s) 214
Ksp22I TGATCA 1 cut(s) 630
Kzo9I GATC 4 cut(s) 196, 558, 630, 967
LguI GCTCTTC 1 cut(s) 538
LmnI GCTCC 1 cut(s) 1010
Lsp1109I GCAGC 1 cut(s) 233
MaeI CTAG 2 cut(s) 422, 546
MaeIII GTNAC 3 cut(s) 275, 609, 934
MalI GATC 4 cut(s) 198, 560, 632, 969
MboI GATC 4 cut(s) 196, 558, 630, 967
MboII GAAGA 9 cut(s) 37, 46, 101, 222, 379, 525, 553, 934, 1100
MfeI CAATTG 1 cut(s) 963
MhlI GDGCHC 2 cut(s) 265, 533
MlsI TGGCCA 1 cut(s) 755
MluCI AATT 4 cut(s) 482, 519, 963, 1015
MluNI TGGCCA 1 cut(s) 755
MlyI GAGTC 1 cut(s) 119
MmeI TCCRAC 1 cut(s) 393
Mox20I TGGCCA 1 cut(s) 755
Mph1103I ATGCAT 1 cut(s) 850
MscI TGGCCA 1 cut(s) 755
MseI TTAA 1 cut(s) 711
MslI CAYNNNNRTG 1 cut(s) 698
Msp20I TGGCCA 1 cut(s) 755
MspI CCGG 3 cut(s) 113, 273, 654
MspR9I CCNGG 4 cut(s) 243, 273, 357, 1113
MunI CAATTG 1 cut(s) 963
Mva1269I GAATGC 2 cut(s) 850, 949
MvaI CCWGG 3 cut(s) 243, 357, 1113
MwoI GCNNNNNNNGC 2 cut(s) 80, 955
NciI CCSGG 1 cut(s) 273
NdeII GATC 4 cut(s) 196, 558, 630, 967
NlaIII CATG 2 cut(s) 261, 912
NlaIV GGNNCC 2 cut(s) 212, 400
NmeAIII GCCGAG 1 cut(s) 432
NmuCI GTSAC 1 cut(s) 609
NsiI ATGCAT 1 cut(s) 850
NspI RCATGY 2 cut(s) 261, 912
NspV TTCGAA 1 cut(s) 920
PceI AGGCCT 2 cut(s) 420, 574
PciI ACATGT 1 cut(s) 257
PciSI GCTCTTC 1 cut(s) 538
PcsI WCGNNNNNNNCGW 1 cut(s) 800
PctI GAATGC 2 cut(s) 850, 949
PfeI GAWTC 1 cut(s) 799
PkrI GCNGC 3 cut(s) 248, 305, 779
PleI GAGTC 1 cut(s) 119
PpsI GAGTC 1 cut(s) 119
PscI ACATGT 1 cut(s) 257
PshAI GACNNNNGTC 1 cut(s) 312
Psp124BI GAGCTC 1 cut(s) 533
Psp6I CCWGG 3 cut(s) 241, 355, 1111
PspGI CCWGG 3 cut(s) 241, 355, 1111
PspN4I GGNNCC 2 cut(s) 212, 400
PspPI GGNCC 1 cut(s) 398
RsaI GTAC 4 cut(s) 212, 689, 793, 806
RsaNI GTAC 4 cut(s) 211, 688, 792, 805
RseI CAYNNNNRTG 1 cut(s) 698
SacI GAGCTC 1 cut(s) 533
SapI GCTCTTC 1 cut(s) 538
SaqAI TTAA 1 cut(s) 711
SatI GCNGC 3 cut(s) 247, 304, 778
Sau3AI GATC 4 cut(s) 196, 558, 630, 967
Sau96I GGNCC 1 cut(s) 398
SchI GAGTC 1 cut(s) 119
ScrFI CCNGG 4 cut(s) 243, 273, 357, 1113
SduI GDGCHC 2 cut(s) 265, 533
SfuI TTCGAA 1 cut(s) 920
SinI GGWCC 1 cut(s) 398
SmiMI CAYNNNNRTG 1 cut(s) 698
Sse9I AATT 4 cut(s) 482, 519, 963, 1015
SseBI AGGCCT 2 cut(s) 420, 574
SsiI CCGC 6 cut(s) 289, 303, 396, 492, 777, 1061
SspI AATATT 1 cut(s) 595
SspMI CTAG 2 cut(s) 422, 546
SstI GAGCTC 1 cut(s) 533
StuI AGGCCT 2 cut(s) 420, 574
StyD4I CCNGG 4 cut(s) 241, 271, 355, 1111
StyI CCWWGG 2 cut(s) 310, 1079
TaaI ACNGT 4 cut(s) 193, 325, 796, 811
TaqI TCGA 3 cut(s) 539, 707, 920
TasI AATT 4 cut(s) 482, 519, 963, 1015
TauI GCSGC 2 cut(s) 306, 780
TfiI GAWTC 1 cut(s) 799
Tru1I TTAA 1 cut(s) 711
Tru9I TTAA 1 cut(s) 711
TscAI CASTG 1 cut(s) 328
TseFI GTSAC 1 cut(s) 609
TseI GCWGC 1 cut(s) 246
Tsp45I GTSAC 1 cut(s) 609
TspDTI ATGAA 5 cut(s) 8, 525, 682, 735, 780
TspGWI ACGGA 1 cut(s) 792
TspRI CASTG 1 cut(s) 328
VpaK11BI GGWCC 1 cut(s) 398
XagI CCTNNNNNAGG 1 cut(s) 240
XapI RAATTY 1 cut(s) 1015
XceI RCATGY 2 cut(s) 261, 912
XcmI CCANNNNNNNNNTGG 1 cut(s) 409
XspI CTAG 2 cut(s) 422, 546
Zsp2I ATGCAT 1 cut(s) 850
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.