pycom17g18490

Uncharacterized protein K02A2.6-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr17
OG0001044
Physical Location & Seq
Forward (+)
15878552 .. 15879030
479 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 438 bp
ATGAAGATGGTGGAGAGGGTTCTGATCCATCGACATGTCGAGCAGTCGATTGGCCAAAAAATGAATGATTTACTAGACGCAATACAAAGCAACAGTGATACACATACCAGGATGCTTGAACTATTAGTCAGTAAAGCCTTCGAAGATGGCCATATTGGCCAACCTCGGCAGCTTTCTTTTACAAATGTTCTAGTACAAGCTGAAAAAAGGTTCGCTCGGTTACAACCAATTGACTTAGAGAAAAGAGGCGGATCAGGCAATAGATCTGACGGACCGAACCAGGGAGAAGAAGCAGCATCCGTGATGCGATATTTATACGCACACAAACTAAACCCTATTTGTGACAATTGTAGTAATGATGTAAGTAGGGATCGTTCTAACCGGGGATTAACTAGGGATGCTAAACACTTGACTCAAATAAATAAAACTAACTTTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RVT_1 RVT_3 rve

Protein Analysis

146

Amino Acids

16.47

Weight (kDa)

9.03

Isoelectric Point (pI)

44.17

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 249
AclWI GGATC 3 cut(s) 19, 259, 378
AcoI YGGCCR 3 cut(s) 52, 148, 157
AfaI GTAC 1 cut(s) 195
AfiI CCNNNNNNNGG 1 cut(s) 281
AflIII ACRYGT 1 cut(s) 34
AgsI TTSAA 1 cut(s) 119
AjnI CCWGG 2 cut(s) 107, 279
AluBI AGCT 2 cut(s) 172, 200
AluI AGCT 2 cut(s) 172, 200
AlwI GGATC 3 cut(s) 19, 259, 378
AoxI GGCC 3 cut(s) 52, 148, 157
ApeKI GCWGC 2 cut(s) 169, 293
AspS9I GGNCC 1 cut(s) 272
AsuC2I CCSGG 1 cut(s) 383
AsuII TTCGAA 1 cut(s) 141
AvaII GGWCC 1 cut(s) 272
BalI TGGCCA 3 cut(s) 54, 150, 159
BbvI GCAGC 2 cut(s) 181, 305
BccI CCATC 2 cut(s) 36, 140
BciT130I CCWGG 2 cut(s) 109, 281
BcnI CCSGG 1 cut(s) 383
BfaI CTAG 3 cut(s) 74, 191, 393
BglI GCCNNNNNGGC 1 cut(s) 156
BglII AGATCT 1 cut(s) 263
BisI GCNGC 2 cut(s) 170, 294
BlsI GCNGC 2 cut(s) 171, 295
Bme1390I CCNGG 3 cut(s) 109, 281, 383
Bme18I GGWCC 1 cut(s) 272
BmgT120I GGNCC 1 cut(s) 272
BmrFI CCNGG 3 cut(s) 109, 281, 383
BmsI GCATC 4 cut(s) 102, 294, 305, 388
Bpu14I TTCGAA 1 cut(s) 141
BpuMI CCSGG 1 cut(s) 383
BsaJI CCNNGG 3 cut(s) 164, 280, 382
Bsc4I CCNNNNNNNGG 1 cut(s) 281
BseBI CCWGG 2 cut(s) 109, 281
BseDI CCNNGG 3 cut(s) 164, 280, 382
BseGI GGATG 3 cut(s) 117, 296, 403
BseLI CCNNNNNNNGG 1 cut(s) 281
BseXI GCAGC 2 cut(s) 181, 305
BshFI GGCC 3 cut(s) 54, 150, 159
BsiSI CCGG 1 cut(s) 382
BslI CCNNNNNNNGG 1 cut(s) 281
BsnI GGCC 3 cut(s) 54, 150, 159
Bsp119I TTCGAA 1 cut(s) 141
Bsp143I GATC 4 cut(s) 24, 251, 263, 370
BspACI CCGC 1 cut(s) 249
BspANI GGCC 3 cut(s) 54, 150, 159
BspPI GGATC 3 cut(s) 19, 259, 378
BspT104I TTCGAA 1 cut(s) 141
BssECI CCNNGG 3 cut(s) 164, 280, 382
BssMI GATC 4 cut(s) 24, 251, 263, 370
Bst2UI CCWGG 2 cut(s) 109, 281
Bst4CI ACNGT 1 cut(s) 95
BstBI TTCGAA 1 cut(s) 141
BstDEI CTNAG 1 cut(s) 235
BstF5I GGATG 3 cut(s) 117, 296, 403
BstKTI GATC 4 cut(s) 27, 254, 266, 373
BstMBI GATC 4 cut(s) 24, 251, 263, 370
BstMWI GCNNNNNNNGC 2 cut(s) 156, 255
BstNI CCWGG 2 cut(s) 109, 281
BstNSI RCATGY 1 cut(s) 38
BstSCI CCNGG 3 cut(s) 107, 279, 381
BstV1I GCAGC 2 cut(s) 181, 305
BstX2I RGATCY 1 cut(s) 263
BstYI RGATCY 1 cut(s) 263
BsuRI GGCC 3 cut(s) 54, 150, 159
BtsCI GGATG 3 cut(s) 117, 296, 403
BtsIMutI CAGTG 1 cut(s) 100
Cfr13I GGNCC 1 cut(s) 272
CpoI CGGWCCG 1 cut(s) 272
CseI GACGC 1 cut(s) 86
Csp6I GTAC 1 cut(s) 194
CspI CGGWCCG 1 cut(s) 272
CviAII CATG 1 cut(s) 35
CviJI RGCY 6 cut(s) 54, 137, 150, 159, 172, 200
CviKI_1 RGCY 6 cut(s) 54, 137, 150, 159, 172, 200
CviQI GTAC 1 cut(s) 194
DdeI CTNAG 1 cut(s) 235
DpnI GATC 4 cut(s) 26, 253, 265, 372
DpnII GATC 4 cut(s) 24, 251, 263, 370
EaeI YGGCCR 3 cut(s) 52, 148, 157
EciI GGCGGA 1 cut(s) 264
Eco47I GGWCC 1 cut(s) 272
EcoRII CCWGG 2 cut(s) 107, 279
FaeI CATG 1 cut(s) 38
FaiI YATR 4 cut(s) 36, 105, 153, 316
FatI CATG 1 cut(s) 34
Fnu4HI GCNGC 2 cut(s) 170, 294
FokI GGATG 3 cut(s) 124, 283, 410
Fsp4HI GCNGC 2 cut(s) 170, 294
FspBI CTAG 3 cut(s) 74, 191, 393
GluI GCNGC 2 cut(s) 170, 294
HaeIII GGCC 3 cut(s) 54, 150, 159
HapII CCGG 1 cut(s) 382
HgaI GACGC 1 cut(s) 86
Hin1II CATG 1 cut(s) 38
HinfI GANTC 1 cut(s) 412
HpaII CCGG 1 cut(s) 382
Hpy188I TCNGA 2 cut(s) 24, 268
HpyAV CCTTC 1 cut(s) 148
HpyCH4III ACNGT 1 cut(s) 95
HpyF10VI GCNNNNNNNGC 2 cut(s) 156, 255
HpyF3I CTNAG 1 cut(s) 235
Hsp92II CATG 1 cut(s) 38
Kzo9I GATC 4 cut(s) 24, 251, 263, 370
LpnPI CCDG 6 cut(s) 94, 121, 240, 266, 293, 395
Lsp1109I GCAGC 2 cut(s) 181, 305
LweI GCATC 4 cut(s) 102, 294, 305, 388
MaeI CTAG 3 cut(s) 74, 191, 393
MaeIII GTNAC 2 cut(s) 219, 341
MalI GATC 4 cut(s) 26, 253, 265, 372
MboI GATC 4 cut(s) 24, 251, 263, 370
MboII GAAGA 3 cut(s) 16, 155, 299
MfeI CAATTG 2 cut(s) 228, 346
MflI RGATCY 1 cut(s) 263
MlsI TGGCCA 3 cut(s) 54, 150, 159
MluCI AATT 2 cut(s) 228, 346
MluNI TGGCCA 3 cut(s) 54, 150, 159
MlyI GAGTC 1 cut(s) 406
MnlI CCTC 3 cut(s) 9, 174, 239
Mox20I TGGCCA 3 cut(s) 54, 150, 159
MscI TGGCCA 3 cut(s) 54, 150, 159
MseI TTAA 2 cut(s) 389, 436
MslI CAYNNNNRTG 1 cut(s) 33
Msp20I TGGCCA 3 cut(s) 54, 150, 159
MspI CCGG 1 cut(s) 382
MspR9I CCNGG 3 cut(s) 109, 281, 383
MunI CAATTG 2 cut(s) 228, 346
MvaI CCWGG 2 cut(s) 109, 281
MwoI GCNNNNNNNGC 2 cut(s) 156, 255
NciI CCSGG 1 cut(s) 383
NdeII GATC 4 cut(s) 24, 251, 263, 370
NlaIII CATG 1 cut(s) 38
NmeAIII GCCGAG 1 cut(s) 145
NmuCI GTSAC 1 cut(s) 341
NspI RCATGY 1 cut(s) 38
NspV TTCGAA 1 cut(s) 141
PciI ACATGT 1 cut(s) 34
PkrI GCNGC 2 cut(s) 171, 295
PleI GAGTC 1 cut(s) 406
PpsI GAGTC 1 cut(s) 406
PscI ACATGT 1 cut(s) 34
Psp6I CCWGG 2 cut(s) 107, 279
PspGI CCWGG 2 cut(s) 107, 279
PspPI GGNCC 1 cut(s) 272
PsrI GAACNNNNNNTAC 2 cut(s) 358, 390
PsuI RGATCY 1 cut(s) 263
RsaI GTAC 1 cut(s) 195
RsaNI GTAC 1 cut(s) 194
RseI CAYNNNNRTG 1 cut(s) 33
Rsr2I CGGWCCG 1 cut(s) 272
RsrII CGGWCCG 1 cut(s) 272
SaqAI TTAA 2 cut(s) 389, 436
SatI GCNGC 2 cut(s) 170, 294
Sau3AI GATC 4 cut(s) 24, 251, 263, 370
Sau96I GGNCC 1 cut(s) 272
SchI GAGTC 1 cut(s) 406
ScrFI CCNGG 3 cut(s) 109, 281, 383
SetI ASST 4 cut(s) 166, 174, 202, 212
SfaNI GCATC 4 cut(s) 102, 294, 305, 388
SfiI GGCCNNNNNGGCC 1 cut(s) 156
SfuI TTCGAA 1 cut(s) 141
SinI GGWCC 1 cut(s) 272
SmiMI CAYNNNNRTG 1 cut(s) 33
Sse9I AATT 2 cut(s) 228, 346
SsiI CCGC 1 cut(s) 249
SspMI CTAG 3 cut(s) 74, 191, 393
StyD4I CCNGG 3 cut(s) 107, 279, 381
TaaI ACNGT 1 cut(s) 95
TaqI TCGA 4 cut(s) 31, 39, 47, 141
TaqII GACCGA 1 cut(s) 289
TasI AATT 2 cut(s) 228, 346
TatI WGTACW 1 cut(s) 193
Tru1I TTAA 2 cut(s) 389, 436
Tru9I TTAA 2 cut(s) 389, 436
TscAI CASTG 1 cut(s) 100
TseFI GTSAC 1 cut(s) 341
TseI GCWGC 2 cut(s) 169, 293
Tsp45I GTSAC 1 cut(s) 341
TspDTI ATGAA 2 cut(s) 17, 77
TspGWI ACGGA 2 cut(s) 285, 289
TspRI CASTG 1 cut(s) 100
VpaK11BI GGWCC 1 cut(s) 272
XceI RCATGY 1 cut(s) 38
XspI CTAG 3 cut(s) 74, 191, 393
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.