Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr17

Orthogroup ID

OG0000834

Physical Location & Seq

Genomic Coordinates Reverse (-)

18690683 .. 18692019

Gene Structure 1337 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1080 bp

ATGGCATCAGAAACCCCACTCGGAATTCCCATCATAGACTTCTCCAAACCAGACCTCAACCAAGGAACCAAAGAATGGGACTTAGTGAGAGCTCAAGTCCGTAATGCGCTCGAAGAGTATGGTTGCTTCGAGGCTTTGTTCGACAAAGTGCCTTCAGACATTCGAAAGTCAACAATTGAATCAATAGAAGAGCTTTTCGACCTTCCTTTACAAACCAAATTACAGAATGTTTCTAAAAAGCCCTACCATGGGTATGTTGGGCAGTACCCCACGGTGCCACTATACGAGAGCATGGGGTTTGACGATGCAAATGTCTATGAACAAGTTGAAAGCTTGACAAATACCTTGTGGCCTCAAGGAAACCCGAGATTTTGGTTCATAACATTAATCCTTTCTCCTAATTTTTTAATATTTTCGTACTTACATATGCACATTAATTTCGTAGTTTATGTCACAACCATACAATCATTCTCAGAGCAAGTTTCGGAGTTGGATCAAATAATCAGAAGGATGATTCTGGAGAGCTTGGGACTTGAAAAATACTTTGAGGAGCATGTAGAATCAACCAACTACCTCCTTCGAGTGATGAAATATAAAGGACCTGAAGCCAAGGAAACTAAGTTGGGGATAAACGCTCACACAGACAAGAACATTGTCACCATTTTGTATCAAAACCAAGTTGATGGTTTAGAAGTGCAAACCAAAGCTGGCAAATGGATCAAAGTCAAGCCTTCATTACCGCACTCTTTCATCGCCATGATTGGCGATTCACTTTATGTGAGTTTTAACATTGTGCTGATGATTTTGCAGGCATGGACAAACGGTCGACTACATTCTCCATATCATAGAGTGATGATGAGTGGAAATGAGGCTAGGTACTCAACTGGATTGTTCTCCATCCCAAAGGAAGGTTGCATTATAAAAGCCCCGGAGGAGGTTGTGGATGAAGAGCACCCTTTGCTTTTTAAGCCCTTTGATCACGTTGAATTTCTAGGGTTCTACTACACGGAGGCTGGCCAGAGAGCTCAGTCTGCTTTGAAAACTTACTGTGGAGTCCAAGACTTGGCTTTGTCTGCTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003824 GO:0005575 GO:0006082 GO:0006629 GO:0006720 GO:0006721 GO:0006790 GO:0006807 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0008299 GO:0008610 GO:0009058 GO:0009314 GO:0009416 GO:0009628 GO:0009685 GO:0009686 GO:0009719 GO:0009725 GO:0009739 GO:0009740 GO:0009755 GO:0009987 GO:0010033 GO:0010476 GO:0010817 GO:0016020 GO:0016053 GO:0016101 GO:0016102 GO:0016114 GO:0016143 GO:0016144 GO:0016491 GO:0016705 GO:0016706 GO:0016707 GO:0019748 GO:0019752 GO:0019757 GO:0019758 GO:0019760 GO:0019761 GO:0023052 GO:0032870 GO:0033993 GO:0042221 GO:0042445 GO:0042446 GO:0043436 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044272 GO:0044281 GO:0044283 GO:0044550 GO:0046394 GO:0050789 GO:0050794 GO:0050896 GO:0051213 GO:0051716 GO:0055114 GO:0065007 GO:0065008 GO:0070887 GO:0071229 GO:0071310 GO:0071370 GO:0071396 GO:0071495 GO:0071704 GO:1901135 GO:1901137 GO:1901564 GO:1901566 GO:1901576 GO:1901657 GO:1901659 GO:1901700 GO:1901701

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

2OG-FeII_Oxy DIOX_N

Protein Analysis

360

Amino Acids

41.1

Weight (kDa)

5.35

Isoelectric Point (pI)

36.74

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DIOX_N	PF14226	9 - 87	2e-11	non-haem dioxygenase in morphine synthesis N-terminal
2OG-FeII_Oxy	PF03171	195 - 299	2.9e-21	2OG-Fe(II) oxygenase superfamily

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000834)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G52820 AT1G52820
fragaria_vesca	FvH4_2g29991 FvH4_6g03562 FvH4_6g30760 FvH4_7g15790
malus_domestica	MD08G1138800.v1.1 MD15G1116900.v1.1 MD15G1295900.v1.1 MD17G1199200.v1.1 MD17G1199600.v1.1 MD17G1199900.v1.1
prunus_persica	Prupe.1G468100_v2.0.a1 Prupe.3G075700_v2.0.a1
pyrus_communis	pycom03g05610 pycom08g11710 pycom15g10530 pycom17g20410
rosa_chinensis	RchiOBHm_Chr2g0137211 RchiOBHm_Chr5g0019671 RchiOBHm_Chr5g0019681 RchiOBHm_Chr5g0079401 RchiOBHm_Chr5g0079891 RchiOBHm_Chr5g0080021
rosa_laevigata	RLG00000010287 RLG00000032460 RLG00000036841 RLG00000036845
rosa_multiflora	Rmu_sc0000595.1_g000050 Rmu_sc0000595.1_g000069 Rmu_sc0000894.1_g000038 Rmu_sc0001148.1_g000011 Rmu_sc0003514.1_g000008 Rmu_sc0008049.1_g000033
rosa_roxburghii	Rroxscaffold_1G00003130 Rroxscaffold_1G00003200 Rroxscaffold_1G00058430 Rroxscaffold_2G00107340
rosa_rugosa	Rorug04G0356200 Rorug04G0356300 Rorug05G0052500 Rorug05G0467100 Rorug05G0467800
rosa_samantha	Rh1DG272100 Rh1DG272500 Rh2AG387900 Rh2AG388100 Rh2CG375500 Rh2DG411100 Rh4DG058700 Rh5AG143200 Rh5AG520900 Rh5AG521300 Rh5BG141800 Rh5BG542900 Rh5CG153700 Rh5CG565700 Rh5CG566800 Rh5DG142300 Rh5DG142400 Rh5DG355000 Rh5DG355100 Rh5DG553400
rosa_wichuraiana	Rw2G031810 Rw5G012690 Rw5G048310 Rw5G048380 Rw6G044980

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	920
AccB1I	GGYRCC	1 cut(s)	274
AccB7I	CCANNNNNTGG	2 cut(s)	75, 1063
AccI	GTMKAC	1 cut(s)	826
AciI	CCGC	1 cut(s)	740
AclWI	GGATC	2 cut(s)	501, 725
AcoI	YGGCCR	1 cut(s)	1015
AcsI	RAATTY	2 cut(s)	24, 986
AcuI	CTGAAG	2 cut(s)	138, 624
AfaI	GTAC	3 cut(s)	266, 419, 878
AfiI	CCNNNNNNNGG	6 cut(s)	75, 248, 249, 908, 934, 1063
AgsI	TTSAA	5 cut(s)	179, 329, 536, 986, 1039
AhdI	GACNNNNNGTC	1 cut(s)	822
AluBI	AGCT	6 cut(s)	92, 193, 333, 525, 707, 1025
AluI	AGCT	6 cut(s)	92, 193, 333, 525, 707, 1025
Alw21I	GWGCWC	3 cut(s)	94, 954, 1027
AlwI	GGATC	2 cut(s)	501, 725
Ama87I	CYCGRG	1 cut(s)	364
AoxI	GGCC	2 cut(s)	350, 1015
ApoI	RAATTY	2 cut(s)	24, 986
AseI	ATTAAT	2 cut(s)	386, 435
AspLEI	GCGC	1 cut(s)	109
AspS9I	GGNCC	1 cut(s)	599
AsuC2I	CCSGG	1 cut(s)	929
AsuHPI	GGTGA	1 cut(s)	649
AsuII	TTCGAA	1 cut(s)	163
AvaI	CYCGRG	1 cut(s)	364
AvaII	GGWCC	1 cut(s)	599
BalI	TGGCCA	1 cut(s)	1017
BanI	GGYRCC	1 cut(s)	274
BanII	GRGCYC	2 cut(s)	94, 1027
BarI	GAAGNNNNNNTAC	2 cut(s)	110, 142
Bbv12I	GWGCWC	3 cut(s)	94, 954, 1027
BccI	CCATC	3 cut(s)	38, 677, 905
BclI	TGATCA	1 cut(s)	976
BcnI	CCSGG	1 cut(s)	929
BfaI	CTAG	2 cut(s)	873, 992
Bme1390I	CCNGG	1 cut(s)	929
Bme18I	GGWCC	1 cut(s)	599
BmeRI	GACNNNNNGTC	1 cut(s)	822
BmeT110I	CYCGRG	1 cut(s)	364
BmgT120I	GGNCC	1 cut(s)	599
BmiI	GGNNCC	2 cut(s)	67, 276
BmrFI	CCNGG	1 cut(s)	929
BmsI	GCATC	2 cut(s)	14, 295
BpmI	CTGGAG	1 cut(s)	539
Bpu14I	TTCGAA	1 cut(s)	163
BpuEI	CTTGAG	2 cut(s)	78, 339
BpuMI	CCSGG	1 cut(s)	929
BsaJI	CCNNGG	5 cut(s)	61, 247, 270, 609, 927
Bsc4I	CCNNNNNNNGG	6 cut(s)	75, 248, 249, 908, 934, 1063
Bse1I	ACTGG	1 cut(s)	889
BseDI	CCNNGG	5 cut(s)	61, 247, 270, 609, 927
BseGI	GGATG	3 cut(s)	516, 897, 949
BseLI	CCNNNNNNNGG	6 cut(s)	75, 248, 249, 908, 934, 1063
BseMII	CTCAG	2 cut(s)	486, 1040
BseNI	ACTGG	1 cut(s)	889
BseRI	GAGGAG	2 cut(s)	563, 947
Bsh1285I	CGRYCG	1 cut(s)	826
BshFI	GGCC	2 cut(s)	352, 1017
BshNI	GGYRCC	1 cut(s)	274
BsiEI	CGRYCG	1 cut(s)	826
BsiHKAI	GWGCWC	3 cut(s)	94, 954, 1027
BsiHKCI	CYCGRG	1 cut(s)	364
BsiSI	CCGG	1 cut(s)	929
BslFI	GGGAC	2 cut(s)	92, 543
BslI	CCNNNNNNNGG	6 cut(s)	75, 248, 249, 908, 934, 1063
BsmFI	GGGAC	2 cut(s)	92, 543
BsnI	GGCC	2 cut(s)	352, 1017
BsoBI	CYCGRG	1 cut(s)	364
Bsp119I	TTCGAA	1 cut(s)	163
Bsp1286I	GDGCHC	3 cut(s)	94, 954, 1027
Bsp143I	GATC	3 cut(s)	493, 717, 976
Bsp19I	CCATGG	1 cut(s)	247
BspACI	CCGC	1 cut(s)	740
BspANI	GGCC	2 cut(s)	352, 1017
BspCNI	CTCAG	2 cut(s)	485, 1039
BspLI	GGNNCC	2 cut(s)	67, 276
BspPI	GGATC	2 cut(s)	501, 725
BspQI	GCTCTTC	2 cut(s)	183, 942
BspT104I	TTCGAA	1 cut(s)	163
BspT107I	GGYRCC	1 cut(s)	274
BsrI	ACTGG	1 cut(s)	889
BssECI	CCNNGG	5 cut(s)	61, 247, 270, 609, 927
BssMI	GATC	3 cut(s)	493, 717, 976
BssT1I	CCWWGG	3 cut(s)	61, 247, 609
Bst4CI	ACNGT	3 cut(s)	274, 824, 1049
Bst6I	CTCTTC	3 cut(s)	108, 183, 942
BstAPI	GCANNNNNTGC	1 cut(s)	958
BstBI	TTCGAA	1 cut(s)	163
BstC8I	GCNNGC	3 cut(s)	709, 810, 1015
BstDEI	CTNAG	5 cut(s)	82, 472, 618, 1026, 1077
BstDSI	CCRYGG	2 cut(s)	247, 270
BstF5I	GGATG	3 cut(s)	516, 897, 949
BstHHI	GCGC	1 cut(s)	109
BstKTI	GATC	3 cut(s)	496, 720, 979
BstMBI	GATC	3 cut(s)	493, 717, 976
BstMCI	CGRYCG	1 cut(s)	826
BstMWI	GCNNNNNNNGC	4 cut(s)	958, 967, 1031, 1073
BstNSI	RCATGY	1 cut(s)	557
BstSCI	CCNGG	1 cut(s)	927
BstXI	CCANNNNNNTGG	1 cut(s)	683
BsuRI	GGCC	2 cut(s)	352, 1017
BtgI	CCRYGG	2 cut(s)	247, 270
BtgZI	GCGATG	1 cut(s)	736
BtsCI	GGATG	3 cut(s)	516, 897, 949
Cac8I	GCNNGC	3 cut(s)	709, 810, 1015
CfoI	GCGC	1 cut(s)	109
Cfr13I	GGNCC	1 cut(s)	599
Csp6I	GTAC	3 cut(s)	265, 418, 877
CviAII	CATG	5 cut(s)	248, 292, 554, 757, 813
CviQI	GTAC	3 cut(s)	265, 418, 877
DdeI	CTNAG	5 cut(s)	82, 472, 618, 1026, 1077
DpnI	GATC	3 cut(s)	495, 719, 978
DpnII	GATC	3 cut(s)	493, 717, 976
DriI	GACNNNNNGTC	1 cut(s)	822
EaeI	YGGCCR	1 cut(s)	1015
Eam1104I	CTCTTC	3 cut(s)	108, 183, 942
Eam1105I	GACNNNNNGTC	1 cut(s)	822
EarI	CTCTTC	3 cut(s)	108, 183, 942
Ecl136II	GAGCTC	2 cut(s)	92, 1025
Eco130I	CCWWGG	3 cut(s)	61, 247, 609
Eco24I	GRGCYC	2 cut(s)	94, 1027
Eco47I	GGWCC	1 cut(s)	599
Eco53kI	GAGCTC	2 cut(s)	92, 1025
Eco57I	CTGAAG	2 cut(s)	138, 624
Eco88I	CYCGRG	1 cut(s)	364
EcoICRI	GAGCTC	2 cut(s)	92, 1025
EcoO109I	RGGNCCY	1 cut(s)	599
EcoRI	GAATTC	1 cut(s)	24
EcoT14I	CCWWGG	3 cut(s)	61, 247, 609
EcoT38I	GRGCYC	2 cut(s)	94, 1027
ErhI	CCWWGG	3 cut(s)	61, 247, 609
FaeI	CATG	5 cut(s)	251, 295, 557, 760, 816
FaqI	GGGAC	2 cut(s)	92, 543
FatI	CATG	5 cut(s)	247, 291, 553, 756, 812
FauNDI	CATATG	1 cut(s)	426
FbaI	TGATCA	1 cut(s)	976
FblI	GTMKAC	1 cut(s)	826
FokI	GGATG	3 cut(s)	523, 884, 956
FriOI	GRGCYC	2 cut(s)	94, 1027
FspBI	CTAG	2 cut(s)	873, 992
GlaI	GCGC	1 cut(s)	108
GsuI	CTGGAG	1 cut(s)	539
HaeIII	GGCC	2 cut(s)	352, 1017
HapII	CCGG	1 cut(s)	929
HhaI	GCGC	1 cut(s)	109
Hin1II	CATG	5 cut(s)	251, 295, 557, 760, 816
Hin6I	GCGC	1 cut(s)	107
HinP1I	GCGC	1 cut(s)	107
HincII	GTYRAC	2 cut(s)	171, 827
HindII	GTYRAC	2 cut(s)	171, 827
HindIII	AAGCTT	1 cut(s)	331
HinfI	GANTC	5 cut(s)	179, 514, 560, 767, 1053
HpaII	CCGG	1 cut(s)	929
HphI	GGTGA	1 cut(s)	649
Hpy166II	GTNNAC	2 cut(s)	171, 827
Hpy188I	TCNGA	6 cut(s)	10, 23, 157, 475, 487, 506
Hpy188III	TCNNGA	1 cut(s)	518
Hpy8I	GTNNAC	2 cut(s)	171, 827
HpyAV	CCTTC	6 cut(s)	162, 212, 501, 587, 741, 902
HpyCH4III	ACNGT	3 cut(s)	274, 824, 1049
HpyCH4IV	ACGT	1 cut(s)	981
HpyCH4V	TGCA	5 cut(s)	308, 430, 697, 808, 915
HpyF10VI	GCNNNNNNNGC	4 cut(s)	958, 967, 1031, 1073
HpyF3I	CTNAG	5 cut(s)	82, 472, 618, 1026, 1077
HpySE526I	ACGT	1 cut(s)	981
Hsp92II	CATG	5 cut(s)	251, 295, 557, 760, 816
HspAI	GCGC	1 cut(s)	107
Ksp22I	TGATCA	1 cut(s)	976
Kzo9I	GATC	3 cut(s)	493, 717, 976
LguI	GCTCTTC	2 cut(s)	183, 942
LmnI	GCTCC	1 cut(s)	550
LpnPI	CCDG	9 cut(s)	63, 503, 615, 693, 794, 870, 942, 999, 1031
LweI	GCATC	2 cut(s)	14, 295
MaeI	CTAG	2 cut(s)	873, 992
MaeII	ACGT	1 cut(s)	981
MaeIII	GTNAC	2 cut(s)	451, 655
MalI	GATC	3 cut(s)	495, 719, 978
MboI	GATC	3 cut(s)	493, 717, 976
MboII	GAAGA	3 cut(s)	125, 200, 959
MfeI	CAATTG	1 cut(s)	174
MhlI	GDGCHC	3 cut(s)	94, 954, 1027
MlsI	TGGCCA	1 cut(s)	1017
MluCI	AATT	6 cut(s)	24, 174, 218, 400, 436, 986
MluNI	TGGCCA	1 cut(s)	1017
MlyI	GAGTC	1 cut(s)	1062
MmeI	TCCRAC	1 cut(s)	471
MnlI	CCTC	9 cut(s)	65, 124, 363, 541, 584, 862, 925, 928, 1003
Mox20I	TGGCCA	1 cut(s)	1017
MscI	TGGCCA	1 cut(s)	1017
MseI	TTAA	5 cut(s)	386, 407, 435, 786, 966
MslI	CAYNNNNRTG	2 cut(s)	252, 755
Msp20I	TGGCCA	1 cut(s)	1017
MspI	CCGG	1 cut(s)	929
MspR9I	CCNGG	1 cut(s)	929
MunI	CAATTG	1 cut(s)	174
MwoI	GCNNNNNNNGC	4 cut(s)	958, 967, 1031, 1073
NciI	CCSGG	1 cut(s)	929
NcoI	CCATGG	1 cut(s)	247
NdeI	CATATG	1 cut(s)	426
NdeII	GATC	3 cut(s)	493, 717, 976
NlaIII	CATG	5 cut(s)	251, 295, 557, 760, 816
NlaIV	GGNNCC	2 cut(s)	67, 276
NmuCI	GTSAC	2 cut(s)	451, 655
NspI	RCATGY	1 cut(s)	557
NspV	TTCGAA	1 cut(s)	163
PciSI	GCTCTTC	2 cut(s)	183, 942
PfeI	GAWTC	4 cut(s)	179, 514, 560, 767
PflMI	CCANNNNNTGG	2 cut(s)	75, 1063
PleI	GAGTC	1 cut(s)	1061
PpsI	GAGTC	1 cut(s)	1061
PpuMI	RGGWCCY	1 cut(s)	599
PshBI	ATTAAT	2 cut(s)	386, 435
PsiI	TTATAA	1 cut(s)	920
Psp124BI	GAGCTC	2 cut(s)	94, 1027
Psp5II	RGGWCCY	1 cut(s)	599
PspN4I	GGNNCC	2 cut(s)	67, 276
PspPI	GGNCC	1 cut(s)	599
PspPPI	RGGWCCY	1 cut(s)	599
RsaI	GTAC	3 cut(s)	266, 419, 878
RsaNI	GTAC	3 cut(s)	265, 418, 877
RseI	CAYNNNNRTG	2 cut(s)	252, 755
SacI	GAGCTC	2 cut(s)	94, 1027
SalI	GTCGAC	1 cut(s)	825
SapI	GCTCTTC	2 cut(s)	183, 942
SaqAI	TTAA	5 cut(s)	386, 407, 435, 786, 966
Sau3AI	GATC	3 cut(s)	493, 717, 976
Sau96I	GGNCC	1 cut(s)	599
SchI	GAGTC	1 cut(s)	1062
ScrFI	CCNGG	1 cut(s)	929
SduI	GDGCHC	3 cut(s)	94, 954, 1027
SfaNI	GCATC	2 cut(s)	14, 295
SfuI	TTCGAA	1 cut(s)	163
SinI	GGWCC	1 cut(s)	599
SmiMI	CAYNNNNRTG	2 cut(s)	252, 755
SmlI	CTYRAG	2 cut(s)	93, 354
SmoI	CTYRAG	2 cut(s)	93, 354
Sse9I	AATT	6 cut(s)	24, 174, 218, 400, 436, 986
SsiI	CCGC	1 cut(s)	740
SspI	AATATT	1 cut(s)	411
SspMI	CTAG	2 cut(s)	873, 992
SstI	GAGCTC	2 cut(s)	94, 1027
StyD4I	CCNGG	1 cut(s)	927
StyI	CCWWGG	3 cut(s)	61, 247, 609
TaaI	ACNGT	3 cut(s)	274, 824, 1049
TaiI	ACGT	1 cut(s)	984
TaqI	TCGA	7 cut(s)	111, 129, 141, 163, 198, 580, 826
TasI	AATT	6 cut(s)	24, 174, 218, 400, 436, 986
TfiI	GAWTC	4 cut(s)	179, 514, 560, 767
Tru1I	TTAA	5 cut(s)	386, 407, 435, 786, 966
Tru9I	TTAA	5 cut(s)	386, 407, 435, 786, 966
TseFI	GTSAC	2 cut(s)	451, 655
Tsp45I	GTSAC	2 cut(s)	451, 655
TspDTI	ATGAA	6 cut(s)	333, 367, 602, 723, 739, 960
TspGWI	ACGGA	2 cut(s)	89, 1022
Van91I	CCANNNNNTGG	2 cut(s)	75, 1063
VpaK11BI	GGWCC	1 cut(s)	599
VspI	ATTAAT	2 cut(s)	386, 435
XapI	RAATTY	2 cut(s)	24, 986
XceI	RCATGY	1 cut(s)	557
XcmI	CCANNNNNNNNNTGG	1 cut(s)	254
XmiI	GTMKAC	1 cut(s)	826
XspI	CTAG	2 cut(s)	873, 992

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.