pycom215g00040

Ribonuclease H protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
tig00000215
OG0000842
Physical Location & Seq
Reverse (-)
141303 .. 141792
490 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 210 bp
ATGACTTTAAGGAGGTTATTCCATATAGAAATATGGAAATGCTGGAACGAGGTGTTTTTCAAAGGAACACTTAAATCACCGGTAGAATCAATGGAAATTTGGAAGGAAAGGGTGATAGAATACAAGGAAGCACAACGGGCGAGCACAACAACCACAGATGCAGTGGATGGAACCAATGAACTGGAATTTGCAGGAAGGAAGGTGAGATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RVT_3

Protein Analysis

70

Amino Acids

8.21

Weight (kDa)

7.9

Isoelectric Point (pI)

49.7

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000842)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g15420 FvH4_2g00771 FvH4_3g29363
malus_domestica MD02G1293300.v1.1 MD06G1023000.v1.1 MD09G1232900.v1.1
prunus_persica Prupe.1G181500_v2.0.a1 Prupe.1G572100_v2.0.a1 Prupe.2G095500_v2.0.a1 Prupe.3G150400_v2.0.a1 Prupe.3G156200_v2.0.a1 Prupe.4G274400_v2.0.a1 Prupe.5G070700_v2.0.a1 Prupe.7G038000_v2.0.a1 Prupe.7G164000_v2.0.a1 Prupe.8G056500_v2.0.a1
pyrus_communis pycom04g02040 pycom05g04600 pycom07g05610 pycom08g16130 pycom11g16470 pycom12g07830 pycom15g38190 pycom215g00040
rosa_chinensis RchiOBHm_Chr1g0348881 RchiOBHm_Chr5g0032951 RchiOBHm_Chr6g0273271 RchiOBHm_Chr7g0218191 RchiOBHm_Chr7g0223721
rosa_multiflora Rmu_co8286615.1_g000001 Rmu_sc0001354.1_g000002 Rmu_sc0001925.1_g000003 Rmu_sc0001925.1_g000005 Rmu_sc0002221.1_g000004 Rmu_sc0002316.1_g000096 Rmu_sc0003291.1_g000005 Rmu_sc0003413.1_g000005 Rmu_sc0003542.1_g000011 Rmu_sc0004035.1_g000003 Rmu_sc0004035.1_g000004 Rmu_sc0004145.1_g000016 Rmu_sc0004660.1_g000004 Rmu_sc0005999.1_g000006 Rmu_sc0006123.1_g000002 Rmu_sc0006586.1_g000006 Rmu_sc0006889.1_g000029 Rmu_sc0008035.1_g000014 Rmu_sc0011962.1_g000002 Rmu_sc0029950.1_g000001 Rmu_sc0042409.1_g000001 Rmu_ssc0000238.1_g000013
rosa_roxburghii Rroxscaffold_2G00137410 Rroxscaffold_4G00312010 Rroxscaffold_4G00320800 Rroxscaffold_5G00341720 Rroxscaffold_5G00353530 Rroxscaffold_5G00360290 Rroxscaffold_7G00214170 Rroxscaffold_7G00215920
rosa_rugosa Rorug02G0157000
rosa_samantha Rh4BG196500 Rh6CG346400 Rh7BG241100 Rh7DG316300
rosa_wichuraiana Rw1G003610 Rw7G012170 Rw7G030150

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcsI RAATTY 2 cut(s) 96, 185
AgeI ACCGGT 1 cut(s) 79
AgsI TTSAA 1 cut(s) 61
Alw21I GWGCWC 1 cut(s) 146
ApoI RAATTY 2 cut(s) 96, 185
AsiGI ACCGGT 1 cut(s) 79
AsuHPI GGTGA 2 cut(s) 69, 124
Bbv12I GWGCWC 1 cut(s) 146
BccI CCATC 1 cut(s) 161
BmiI GGNNCC 1 cut(s) 172
BmsI GCATC 1 cut(s) 148
BsaWI WCCGGW 1 cut(s) 79
Bse118I RCCGGY 1 cut(s) 79
Bse1I ACTGG 1 cut(s) 186
BseGI GGATG 1 cut(s) 172
BseNI ACTGG 1 cut(s) 186
BshTI ACCGGT 1 cut(s) 79
BsiHKAI GWGCWC 1 cut(s) 146
BsiSI CCGG 1 cut(s) 80
Bsp1286I GDGCHC 1 cut(s) 146
BspLI GGNNCC 1 cut(s) 172
BsrFI RCCGGY 1 cut(s) 79
BsrI ACTGG 1 cut(s) 186
BssAI RCCGGY 1 cut(s) 79
BstC8I GCNNGC 1 cut(s) 142
BstF5I GGATG 1 cut(s) 172
BstMWI GCNNNNNNNGC 1 cut(s) 137
BstXI CCANNNNNNTGG 1 cut(s) 181
BtsCI GGATG 1 cut(s) 172
BtsI GCAGTG 1 cut(s) 168
BtsIMutI CAGTG 1 cut(s) 168
Cac8I GCNNGC 1 cut(s) 142
Cfr10I RCCGGY 1 cut(s) 79
CspAI ACCGGT 1 cut(s) 79
FaiI YATR 3 cut(s) 24, 26, 34
FalI AAGNNNNNCTT 2 cut(s) 54, 86
FokI GGATG 1 cut(s) 179
HapII CCGG 1 cut(s) 80
HinfI GANTC 1 cut(s) 86
HpaII CCGG 1 cut(s) 80
HphI GGTGA 2 cut(s) 69, 124
HpyAV CCTTC 3 cut(s) 97, 189, 193
HpyCH4V TGCA 2 cut(s) 161, 191
HpyF10VI GCNNNNNNNGC 1 cut(s) 137
LpnPI CCDG 4 cut(s) 28, 93, 167, 177
LweI GCATC 1 cut(s) 148
MhlI GDGCHC 1 cut(s) 146
MluCI AATT 2 cut(s) 96, 185
MnlI CCTC 2 cut(s) 6, 43
MseI TTAA 2 cut(s) 8, 72
MspI CCGG 1 cut(s) 80
MwoI GCNNNNNNNGC 1 cut(s) 137
NlaIV GGNNCC 1 cut(s) 172
PfeI GAWTC 1 cut(s) 86
PinAI ACCGGT 1 cut(s) 79
PspN4I GGNNCC 1 cut(s) 172
SaqAI TTAA 2 cut(s) 8, 72
SduI GDGCHC 1 cut(s) 146
SetI ASST 3 cut(s) 17, 54, 204
SfaNI GCATC 1 cut(s) 148
SgeI CNNG 8 cut(s) 55, 61, 92, 136, 149, 153, 194, 204
Sse9I AATT 2 cut(s) 96, 185
TasI AATT 2 cut(s) 96, 185
TfiI GAWTC 1 cut(s) 86
Tru1I TTAA 2 cut(s) 8, 72
Tru9I TTAA 2 cut(s) 8, 72
TscAI CASTG 1 cut(s) 168
TspDTI ATGAA 1 cut(s) 192
TspRI CASTG 1 cut(s) 168
XapI RAATTY 2 cut(s) 96, 185
XcmI CCANNNNNNNNNTGG 1 cut(s) 160
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.