RchiOBHm_Chr1g0380921

B3 domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
1
OG0000766
Physical Location & Seq
Reverse (-)
66368231 .. 66369142
912 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 912 bp
ATGGATATGGGTAGTACCTCCGAGGCTAAAGAACCAAATTCGTCAGTCGTAAAAGAATTGAAGGTGGATGCGTTATACTCAGTTGGCACAATAAAGACAGAAAATTCTTTGCCTAGGGCAAACTCTATAATGAGTTGTGATATTAAGAAGAAGAGTGCTAATGGTGATGATGATAAACAATGGGGTTTGAGGCCGAAGCCAAAGAATATCAAATTGAGGAAGCCAAAGAAGGAGATCACAACACAAATTATTGATGCTAACGGTTTGCCTGAAGAATACAAGAGAAAGATTGAAAATTTTGATAAGGCTAAGGCGACTTTGGTGATACAGAAGGAGTTGACCAAGACTGATTTGTCACGTACCGCTTGCCGGTTGTCAATGCCTATGAACCAAATCAAACCGGAGAGTTTTCTGAATGCAGAAGAGATAAAGTTTCTTGCAAAACAAAATGACTGGCCAGTTTCGGTTATAGATCCCCTACTTGAAGAAGAAGATTTGACCTTGAGGCAGTGGAACATGGAAAAGAAAACGGGTAAGACGAGCTCAAGCTATGTGTTGAAAACACGTTGGAATGAAGTTGCCGATAAAAACAATCTCAAGGAAAAAGACGTAGTACAAGTTTGGTCATTCCGGGATGTGGGAAACAACCTTCACTTTGCTATTGTTTTGGTTAAGAAGGGTGAGAGAAAGGGTGGTGAACATAGTAGTAGTCGAGGGTATAGCCAGCCGCCTTCGCTATCAACAACACCGCGTGATATTGTTGATGGTGAAAGAAGAAGTGGTAGTGGTCAAGGAACAGAATCAAAGGAAGAAGGGATGATAGGAGTTAATAGCAATGTTGAGAGTAATAGTGAGAGAAGTACTATGAGCAATGGCTCTAATGAAAAACATGAAAGTTTAAGCCAGACATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF313

Protein Analysis

303

Amino Acids

33.98

Weight (kDa)

8.93

Isoelectric Point (pI)

43.26

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
At2g31720-like PF03754 102 - 195 1.6e-16 B3 domain-containing protein At2g31720-like
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 352
AccII CGCG 1 cut(s) 751
AciI CCGC 3 cut(s) 363, 728, 749
AclWI GGATC 1 cut(s) 467
AcoI YGGCCR 1 cut(s) 455
AcsI RAATTY 3 cut(s) 37, 103, 295
AcuI CTGAAG 1 cut(s) 291
AdeI CACNNNGTG 1 cut(s) 752
AfaI GTAC 4 cut(s) 16, 361, 615, 862
AfiI CCNNNNNNNGG 2 cut(s) 369, 637
AflIII ACRYGT 1 cut(s) 563
AgsI TTSAA 4 cut(s) 61, 293, 485, 559
AluBI AGCT 2 cut(s) 543, 549
AluI AGCT 2 cut(s) 543, 549
Alw21I GWGCWC 1 cut(s) 545
AlwI GGATC 1 cut(s) 467
AoxI GGCC 2 cut(s) 191, 455
ApoI RAATTY 3 cut(s) 37, 103, 295
AspA2I CCTAGG 1 cut(s) 113
AsuC2I CCSGG 1 cut(s) 632
AsuHPI GGTGA 5 cut(s) 176, 334, 692, 707, 779
AvrII CCTAGG 1 cut(s) 113
BalI TGGCCA 1 cut(s) 457
BanII GRGCYC 1 cut(s) 545
Bbv12I GWGCWC 1 cut(s) 545
BccI CCATC 1 cut(s) 758
BcnI CCSGG 1 cut(s) 632
BfaI CTAG 1 cut(s) 114
BisI GCNGC 1 cut(s) 728
BlnI CCTAGG 1 cut(s) 113
BlsI GCNGC 1 cut(s) 729
BmcAI AGTACT 1 cut(s) 862
Bme1390I CCNGG 1 cut(s) 632
BmrFI CCNGG 1 cut(s) 632
BmsI GCATC 2 cut(s) 58, 244
Bpu10I CCTNAGC 1 cut(s) 309
BpuEI CTTGAG 3 cut(s) 523, 529, 581
BpuMI CCSGG 1 cut(s) 632
BsaAI YACGTR 1 cut(s) 359
BsaJI CCNNGG 2 cut(s) 21, 113
BsaWI WCCGGW 1 cut(s) 400
Bsc4I CCNNNNNNNGG 2 cut(s) 369, 637
Bse118I RCCGGY 1 cut(s) 369
Bse1I ACTGG 2 cut(s) 458, 458
Bse3DI GCAATG 2 cut(s) 841, 877
BseDI CCNNGG 2 cut(s) 21, 113
BseGI GGATG 3 cut(s) 73, 640, 822
BseLI CCNNNNNNNGG 2 cut(s) 369, 637
BseMI GCAATG 2 cut(s) 841, 877
BseMII CTCAG 1 cut(s) 93
BseNI ACTGG 2 cut(s) 458, 458
Bsh1236I CGCG 1 cut(s) 751
BshFI GGCC 2 cut(s) 193, 457
BsiHKAI GWGCWC 1 cut(s) 545
BsiSI CCGG 3 cut(s) 370, 401, 631
BslI CCNNNNNNNGG 2 cut(s) 369, 637
BsmI GAATGC 1 cut(s) 421
BsnI GGCC 2 cut(s) 193, 457
Bsp1286I GDGCHC 1 cut(s) 545
Bsp143I GATC 2 cut(s) 234, 472
BspACI CCGC 3 cut(s) 363, 728, 749
BspANI GGCC 2 cut(s) 193, 457
BspCNI CTCAG 1 cut(s) 92
BspFNI CGCG 1 cut(s) 751
BspPI GGATC 1 cut(s) 467
BsrDI GCAATG 2 cut(s) 841, 877
BsrFI RCCGGY 1 cut(s) 369
BsrI ACTGG 2 cut(s) 458, 458
BssAI RCCGGY 1 cut(s) 369
BssECI CCNNGG 2 cut(s) 21, 113
BssMI GATC 2 cut(s) 234, 472
BssT1I CCWWGG 1 cut(s) 113
Bst4CI ACNGT 1 cut(s) 263
Bst6I CTCTTC 2 cut(s) 146, 417
BstBAI YACGTR 1 cut(s) 359
BstC8I GCNNGC 2 cut(s) 367, 725
BstDEI CTNAG 2 cut(s) 79, 309
BstF5I GGATG 3 cut(s) 73, 640, 822
BstFNI CGCG 1 cut(s) 751
BstKTI GATC 2 cut(s) 237, 475
BstMBI GATC 2 cut(s) 234, 472
BstMWI GCNNNNNNNGC 1 cut(s) 733
BstSCI CCNGG 1 cut(s) 630
BstUI CGCG 1 cut(s) 751
BstX2I RGATCY 1 cut(s) 472
BstYI RGATCY 1 cut(s) 472
BsuRI GGCC 2 cut(s) 193, 457
BtsCI GGATG 3 cut(s) 73, 640, 822
BtsI GCAGTG 1 cut(s) 515
BtsIMutI CAGTG 1 cut(s) 515
Cac8I GCNNGC 2 cut(s) 367, 725
Cfr10I RCCGGY 1 cut(s) 369
Csp6I GTAC 4 cut(s) 15, 360, 614, 861
CviAII CATG 2 cut(s) 517, 890
CviQI GTAC 4 cut(s) 15, 360, 614, 861
DdeI CTNAG 2 cut(s) 79, 309
DpnI GATC 2 cut(s) 236, 474
DpnII GATC 2 cut(s) 234, 472
DraIII CACNNNGTG 1 cut(s) 752
DrdI GACNNNNNNGTC 1 cut(s) 352
DseDI GACNNNNNNGTC 1 cut(s) 352
EaeI YGGCCR 1 cut(s) 455
Eam1104I CTCTTC 2 cut(s) 146, 417
EarI CTCTTC 2 cut(s) 146, 417
Ecl136II GAGCTC 1 cut(s) 543
Eco130I CCWWGG 1 cut(s) 113
Eco24I GRGCYC 1 cut(s) 545
Eco53kI GAGCTC 1 cut(s) 543
Eco57I CTGAAG 1 cut(s) 291
EcoICRI GAGCTC 1 cut(s) 543
EcoT14I CCWWGG 1 cut(s) 113
EcoT38I GRGCYC 1 cut(s) 545
ErhI CCWWGG 1 cut(s) 113
FaeI CATG 2 cut(s) 520, 893
FatI CATG 2 cut(s) 516, 889
Fnu4HI GCNGC 1 cut(s) 728
FokI GGATG 3 cut(s) 80, 647, 829
FriOI GRGCYC 1 cut(s) 545
Fsp4HI GCNGC 1 cut(s) 728
FspBI CTAG 1 cut(s) 114
GluI GCNGC 1 cut(s) 728
HaeIII GGCC 2 cut(s) 193, 457
HapII CCGG 3 cut(s) 370, 401, 631
Hin1II CATG 2 cut(s) 520, 893
HincII GTYRAC 1 cut(s) 339
HindII GTYRAC 1 cut(s) 339
HinfI GANTC 1 cut(s) 800
HpaII CCGG 3 cut(s) 370, 401, 631
HphI GGTGA 5 cut(s) 176, 334, 692, 707, 779
Hpy166II GTNNAC 2 cut(s) 339, 698
Hpy188I TCNGA 2 cut(s) 22, 414
Hpy8I GTNNAC 2 cut(s) 339, 698
HpyAV CCTTC 7 cut(s) 55, 223, 325, 659, 670, 741, 806
HpyCH4III ACNGT 1 cut(s) 263
HpyCH4IV ACGT 3 cut(s) 358, 565, 609
HpyCH4V TGCA 2 cut(s) 419, 440
HpyF10VI GCNNNNNNNGC 1 cut(s) 733
HpyF3I CTNAG 2 cut(s) 79, 309
HpySE526I ACGT 3 cut(s) 358, 565, 609
Hsp92II CATG 2 cut(s) 520, 893
Kzo9I GATC 2 cut(s) 234, 472
LpnPI CCDG 7 cut(s) 282, 383, 414, 439, 471, 644, 737
LweI GCATC 2 cut(s) 58, 244
MaeI CTAG 1 cut(s) 114
MaeII ACGT 3 cut(s) 358, 565, 609
MaeIII GTNAC 1 cut(s) 354
MalI GATC 2 cut(s) 236, 474
MboI GATC 2 cut(s) 234, 472
MboII GAAGA 9 cut(s) 160, 163, 284, 434, 497, 500, 503, 786, 821
MflI RGATCY 1 cut(s) 472
MhlI GDGCHC 1 cut(s) 545
MlsI TGGCCA 1 cut(s) 457
MluCI AATT 6 cut(s) 37, 56, 103, 212, 246, 295
MluNI TGGCCA 1 cut(s) 457
MmeI TCCRAC 1 cut(s) 548
MnlI CCTC 6 cut(s) 16, 28, 183, 210, 498, 707
Mox20I TGGCCA 1 cut(s) 457
MscI TGGCCA 1 cut(s) 457
MseI TTAA 4 cut(s) 144, 672, 828, 899
Msp20I TGGCCA 1 cut(s) 457
MspI CCGG 3 cut(s) 370, 401, 631
MspR9I CCNGG 1 cut(s) 632
Mva1269I GAATGC 1 cut(s) 421
MvnI CGCG 1 cut(s) 751
MwoI GCNNNNNNNGC 1 cut(s) 733
NciI CCSGG 1 cut(s) 632
NdeII GATC 2 cut(s) 234, 472
NlaIII CATG 2 cut(s) 520, 893
NmuCI GTSAC 1 cut(s) 354
PcsI WCGNNNNNNNCGW 1 cut(s) 536
PctI GAATGC 1 cut(s) 421
PfeI GAWTC 1 cut(s) 800
PfoI TCCNGGA 1 cut(s) 630
PkrI GCNGC 1 cut(s) 729
Ppu21I YACGTR 1 cut(s) 359
Psp124BI GAGCTC 1 cut(s) 545
PsuI RGATCY 1 cut(s) 472
RsaI GTAC 4 cut(s) 16, 361, 615, 862
RsaNI GTAC 4 cut(s) 15, 360, 614, 861
SacI GAGCTC 1 cut(s) 545
SaqAI TTAA 4 cut(s) 144, 672, 828, 899
SatI GCNGC 1 cut(s) 728
Sau3AI GATC 2 cut(s) 234, 472
ScaI AGTACT 1 cut(s) 862
ScrFI CCNGG 1 cut(s) 632
SduI GDGCHC 1 cut(s) 545
SetI ASST 9 cut(s) 20, 66, 361, 503, 545, 551, 568, 612, 651
SfaNI GCATC 2 cut(s) 58, 244
SmlI CTYRAG 3 cut(s) 502, 544, 596
SmoI CTYRAG 3 cut(s) 502, 544, 596
Sse9I AATT 6 cut(s) 37, 56, 103, 212, 246, 295
SsiI CCGC 3 cut(s) 363, 728, 749
SspMI CTAG 1 cut(s) 114
SstI GAGCTC 1 cut(s) 545
StyD4I CCNGG 1 cut(s) 630
StyI CCWWGG 1 cut(s) 113
TaaI ACNGT 1 cut(s) 263
TaiI ACGT 3 cut(s) 361, 568, 612
TaqI TCGA 1 cut(s) 712
TasI AATT 6 cut(s) 37, 56, 103, 212, 246, 295
TatI WGTACW 2 cut(s) 613, 860
TauI GCSGC 1 cut(s) 730
TfiI GAWTC 1 cut(s) 800
Tru1I TTAA 4 cut(s) 144, 672, 828, 899
Tru9I TTAA 4 cut(s) 144, 672, 828, 899
TscAI CASTG 1 cut(s) 515
TseFI GTSAC 1 cut(s) 354
Tsp45I GTSAC 1 cut(s) 354
TspDTI ATGAA 4 cut(s) 401, 588, 897, 906
TspRI CASTG 1 cut(s) 515
XapI RAATTY 3 cut(s) 37, 103, 295
XmaJI CCTAGG 1 cut(s) 113
XspI CTAG 1 cut(s) 114
ZrmI AGTACT 1 cut(s) 862
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.