AT4G05030

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
4
OG0000276
Physical Location & Seq
Reverse (-)
2576677 .. 2577974
1298 bp
Loading structure...
UTR
Exon/CDS
Intron
AT4G05030.1

Sequence Viewer

Length: 333 bp
ATGGCCATTGTGGGCCGGTCCGTTCGACACCTCTTTGCAAAAACACGAAATAAGGGACTAGTTTCCTTTCGGGCCTTTTATAATTCAGGACCGGTCGTGGTCCTCACGAAAATCTTGATGTCGGTAAGTATGAGGTGCGACAAATGTCGTTCAGAAGCCCTCAAGATCGGAGCCAAAACCACTGGAGTGACGTTTGTGGGAATAGAAGGAGAAGAGAAAGACAAAGTGGTGGTGATCGGAGAAGGTGTCGACGCCGCATGTTTAGTTGTCCGGCTTCGCAAGAAAGTTGGTTTCGCTGATATTATCAGCGTCACAGATGTTGACGACACTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
HMA

Protein Analysis

110

Amino Acids

11.89

Weight (kDa)

9.51

Isoelectric Point (pI)

33.54

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000276)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G05030 AT4G05030
fragaria_vesca FvH4_3g24080 FvH4_3g24080 FvH4_3g24100 FvH4_3g24100 FvH4_3g42050 FvH4_3g42060 FvH4_3g42070 FvH4_3g42071 FvH4_3g42080 FvH4_3g42090 FvH4_3g42100 FvH4_3g42110
malus_domestica MD03G1038100.v1.1 MD03G1038400.v1.1 MD03G1038600.v1.1 MD03G1038900.v1.1 MD03G1039000.v1.1 MD03G1039100.v1.1 MD03G1188500.v1.1 MD10G1233100.v1.1 MD10G1233300.v1.1 MD10G1341200.v1.1 MD11G1039200.v1.1 MD11G1039300.v1.1 MD11G1204400.v1.1 MD11G1204600.v1.1
prunus_persica Prupe.2G123900_v2.0.a1 Prupe.4G001900_v2.0.a1 Prupe.4G234700_v2.0.a1 Prupe.4G234800_v2.0.a1 Prupe.6G025900_v2.0.a1 Prupe.6G030200_v2.0.a1 Prupe.6G030300_v2.0.a1 Prupe.6G030400_v2.0.a1 Prupe.6G030600_v2.0.a1 Prupe.6G030900_v2.0.a1 Prupe.6G031000_v2.0.a1 Prupe.6G031100_v2.0.a1 Prupe.6G031100_v2.0.a1
pyrus_communis pycom03g02940 pycom03g02950 pycom03g02980 pycom03g02990 pycom03g03010 pycom11g03310 pycom11g03320
rosa_chinensis RchiOBHm_Chr3g0484311 RchiOBHm_Chr5g0000231 RchiOBHm_Chr5g0042661 RchiOBHm_Chr5g0042671 RchiOBHm_Chr5g0075281 RchiOBHm_Chr5g0075291 RchiOBHm_Chr5g0075321 RchiOBHm_Chr5g0075331
rosa_laevigata RLG00000034149 RLG00000036545 RLG00000036546 RLG00000036547 RLG00000036548 RLG00000036549 RLG00000036550
rosa_multiflora Rmu_sc0000295.1_g000011 Rmu_sc0000770.1_g000041 Rmu_sc0000770.1_g000049 Rmu_sc0002564.1_g000002 Rmu_sc0002564.1_g000003 Rmu_sc0002564.1_g000016
rosa_roxburghii Rroxscaffold_1G00006200 Rroxscaffold_1G00006210 Rroxscaffold_1G00006220 Rroxscaffold_1G00006250 Rroxscaffold_1G00006270 Rroxscaffold_1G00037900 Rroxscaffold_1G00037980 Rroxscaffold_6G00397790
rosa_rugosa Rorug03G0210600 Rorug05G0203800 Rorug05G0203900 Rorug05G0438100 Rorug05G0438200 Rorug05G0438700 Rorug05G0438900 Rorug05G0438900
rosa_samantha Rh3AG259700 Rh3AG259800 Rh3BG296300 Rh3DG289900 Rh5AG001600 Rh5AG288900 Rh5AG289000 Rh5AG289200 Rh5AG494800 Rh5AG495000 Rh5AG495200 Rh5AG495300 Rh5BG293000 Rh5BG293100 Rh5BG293300 Rh5BG516400 Rh5BG516500 Rh5BG516900 Rh5BG517000 Rh5CG001900 Rh5CG325700 Rh5CG325900 Rh5CG326000 Rh5CG540200 Rh5CG540300 Rh5CG540500 Rh5CG540600 Rh5DG001900 Rh5DG302900 Rh5DG303000 Rh5DG303200 Rh5DG529100 Rh5DG529300 Rh5DG529400 Rh5DG532500
rosa_wichuraiana Rw3G023420 Rw3G023430 Rw5G000210 Rw5G026800 Rw5G045910 Rw5G045920 Rw5G045930 Rw5G045940 Rw5G045950

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 81
AccI GTMKAC 1 cut(s) 249
AciI CCGC 1 cut(s) 255
AcoI YGGCCR 1 cut(s) 3
AcyI GRCGYC 1 cut(s) 252
AgeI ACCGGT 1 cut(s) 91
AhlI ACTAGT 1 cut(s) 58
AleI CACNNNNGTG 1 cut(s) 185
AoxI GGCC 3 cut(s) 3, 13, 72
AsiGI ACCGGT 1 cut(s) 91
AspS9I GGNCC 5 cut(s) 13, 18, 72, 89, 100
AsuHPI GGTGA 1 cut(s) 244
AvaII GGWCC 3 cut(s) 18, 89, 100
BalI TGGCCA 1 cut(s) 5
BcuI ACTAGT 1 cut(s) 58
BfaI CTAG 1 cut(s) 59
BisI GCNGC 1 cut(s) 255
BlsI GCNGC 1 cut(s) 256
Bme18I GGWCC 3 cut(s) 18, 89, 100
BmgT120I GGNCC 5 cut(s) 13, 18, 72, 89, 100
BmiI GGNNCC 1 cut(s) 172
BoxI GACNNNNGTC 1 cut(s) 144
BpmI CTGGAG 1 cut(s) 204
BpuEI CTTGAG 1 cut(s) 146
BsaHI GRCGYC 1 cut(s) 252
BsaWI WCCGGW 1 cut(s) 91
BsaXI ACNNNNNCTCC 2 cut(s) 231, 261
Bse118I RCCGGY 2 cut(s) 15, 91
Bse1I ACTGG 1 cut(s) 187
BseNI ACTGG 1 cut(s) 187
Bsh1285I CGRYCG 1 cut(s) 96
BshFI GGCC 3 cut(s) 5, 15, 74
BshTI ACCGGT 1 cut(s) 91
BsiEI CGRYCG 1 cut(s) 96
BsiSI CCGG 3 cut(s) 16, 92, 271
BslFI GGGAC 1 cut(s) 69
BsmFI GGGAC 1 cut(s) 69
BsnI GGCC 3 cut(s) 5, 15, 74
Bsp143I GATC 2 cut(s) 165, 234
BspACI CCGC 1 cut(s) 255
BspANI GGCC 3 cut(s) 5, 15, 74
BspLI GGNNCC 1 cut(s) 172
BsrFI RCCGGY 2 cut(s) 15, 91
BsrI ACTGG 1 cut(s) 187
BssAI RCCGGY 2 cut(s) 15, 91
BssMI GATC 2 cut(s) 165, 234
BssNI GRCGYC 1 cut(s) 252
Bst6I CTCTTC 1 cut(s) 207
BstACI GRCGYC 1 cut(s) 252
BstKTI GATC 2 cut(s) 168, 237
BstMBI GATC 2 cut(s) 165, 234
BstMCI CGRYCG 1 cut(s) 96
BstNSI RCATGY 1 cut(s) 261
BstPAI GACNNNNGTC 1 cut(s) 144
BsuRI GGCC 3 cut(s) 5, 15, 74
BtsIMutI CAGTG 1 cut(s) 180
Cfr10I RCCGGY 2 cut(s) 15, 91
Cfr13I GGNCC 5 cut(s) 13, 18, 72, 89, 100
CpoI CGGWCCG 1 cut(s) 18
CseI GACGC 2 cut(s) 260, 298
CspAI ACCGGT 1 cut(s) 91
CspI CGGWCCG 1 cut(s) 18
CviAII CATG 1 cut(s) 258
CviJI RGCY 6 cut(s) 5, 15, 74, 158, 173, 274
CviKI_1 RGCY 6 cut(s) 5, 15, 74, 158, 173, 274
DpnI GATC 2 cut(s) 167, 236
DpnII GATC 2 cut(s) 165, 234
EaeI YGGCCR 1 cut(s) 3
Eam1104I CTCTTC 1 cut(s) 207
EarI CTCTTC 1 cut(s) 207
Eco47I GGWCC 3 cut(s) 18, 89, 100
FaeI CATG 1 cut(s) 261
FaiI YATR 3 cut(s) 81, 131, 259
FaqI GGGAC 1 cut(s) 69
FatI CATG 1 cut(s) 257
FblI GTMKAC 1 cut(s) 249
Fnu4HI GCNGC 1 cut(s) 255
Fsp4HI GCNGC 1 cut(s) 255
FspBI CTAG 1 cut(s) 59
GluI GCNGC 1 cut(s) 255
GsuI CTGGAG 1 cut(s) 204
HaeIII GGCC 3 cut(s) 5, 15, 74
HapII CCGG 3 cut(s) 16, 92, 271
HgaI GACGC 2 cut(s) 260, 298
Hin1I GRCGYC 1 cut(s) 252
Hin1II CATG 1 cut(s) 261
HincII GTYRAC 2 cut(s) 250, 322
HindII GTYRAC 2 cut(s) 250, 322
HpaII CCGG 3 cut(s) 16, 92, 271
HphI GGTGA 1 cut(s) 244
Hpy166II GTNNAC 2 cut(s) 250, 322
Hpy188I TCNGA 3 cut(s) 154, 170, 239
Hpy188III TCNNGA 4 cut(s) 87, 106, 115, 163
Hpy8I GTNNAC 2 cut(s) 250, 322
Hpy99I CGWCG 1 cut(s) 254
HpyAV CCTTC 2 cut(s) 200, 236
HpyCH4IV ACGT 1 cut(s) 191
HpyCH4V TGCA 1 cut(s) 38
HpySE526I ACGT 1 cut(s) 191
Hsp92I GRCGYC 1 cut(s) 252
Hsp92II CATG 1 cut(s) 261
Kzo9I GATC 2 cut(s) 165, 234
LmnI GCTCC 1 cut(s) 170
LpnPI CCDG 5 cut(s) 29, 72, 105, 168, 284
MaeI CTAG 1 cut(s) 59
MaeII ACGT 1 cut(s) 191
MaeIII GTNAC 2 cut(s) 187, 310
MalI GATC 2 cut(s) 167, 236
MboI GATC 2 cut(s) 165, 234
MboII GAAGA 1 cut(s) 224
MlsI TGGCCA 1 cut(s) 5
MluCI AATT 1 cut(s) 82
MluNI TGGCCA 1 cut(s) 5
MnlI CCTC 4 cut(s) 41, 113, 126, 170
Mox20I TGGCCA 1 cut(s) 5
MscI TGGCCA 1 cut(s) 5
MseI TTAA 1 cut(s) 331
MslI CAYNNNNRTG 1 cut(s) 185
Msp20I TGGCCA 1 cut(s) 5
MspI CCGG 3 cut(s) 16, 92, 271
NdeII GATC 2 cut(s) 165, 234
NlaIII CATG 1 cut(s) 261
NlaIV GGNNCC 1 cut(s) 172
NmuCI GTSAC 2 cut(s) 187, 310
NspI RCATGY 1 cut(s) 261
OliI CACNNNNGTG 1 cut(s) 185
PinAI ACCGGT 1 cut(s) 91
PkrI GCNGC 1 cut(s) 256
PshAI GACNNNNGTC 1 cut(s) 144
PsiI TTATAA 1 cut(s) 81
PspN4I GGNNCC 1 cut(s) 172
PspPI GGNCC 5 cut(s) 13, 18, 72, 89, 100
RseI CAYNNNNRTG 1 cut(s) 185
Rsr2I CGGWCCG 1 cut(s) 18
RsrII CGGWCCG 1 cut(s) 18
SalI GTCGAC 1 cut(s) 248
SaqAI TTAA 1 cut(s) 331
SatI GCNGC 1 cut(s) 255
Sau3AI GATC 2 cut(s) 165, 234
Sau96I GGNCC 5 cut(s) 13, 18, 72, 89, 100
SetI ASST 4 cut(s) 33, 137, 194, 247
SinI GGWCC 3 cut(s) 18, 89, 100
SmiMI CAYNNNNRTG 1 cut(s) 185
SmlI CTYRAG 1 cut(s) 161
SmoI CTYRAG 1 cut(s) 161
SpeI ACTAGT 1 cut(s) 58
Sse9I AATT 1 cut(s) 82
SsiI CCGC 1 cut(s) 255
SspMI CTAG 1 cut(s) 59
TaiI ACGT 1 cut(s) 194
TaqI TCGA 2 cut(s) 25, 249
TasI AATT 1 cut(s) 82
TauI GCSGC 1 cut(s) 257
Tru1I TTAA 1 cut(s) 331
Tru9I TTAA 1 cut(s) 331
TscAI CASTG 1 cut(s) 187
TseFI GTSAC 2 cut(s) 187, 310
Tsp45I GTSAC 2 cut(s) 187, 310
TspGWI ACGGA 1 cut(s) 10
TspRI CASTG 1 cut(s) 187
VpaK11BI GGWCC 3 cut(s) 18, 89, 100
XceI RCATGY 1 cut(s) 261
XmiI GTMKAC 1 cut(s) 249
XspI CTAG 1 cut(s) 59
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.