Rh5AG001600

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5A
OG0000276
Physical Location & Seq
Forward (+)
176394 .. 176824
431 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5AG001600.1

Sequence Viewer

Length: 222 bp
ATGAAGCAAAAGATTGTGATGAAAGTACCGATGTACTGCCGGAAATGCCAAACGAAGGCGCTCAAAATTGTTGCCAAAGAAAATGGTGTGAGCTTTATGGCGTTAGGAGAGGAGAAGGACAGCGTCGTGGTGATTGGGGAGGGAGTAGACGCCATCAAGTTGGCTAAGAGCCTGAGGAAGAAGTTCAAGAACACTCACATTATCACCGTTGCAGAGGTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
HMA

Protein Analysis

73

Amino Acids

8.12

Weight (kDa)

9.78

Isoelectric Point (pI)

15.66

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
HMA PF00403 6 - 63 4.5e-06 Heavy-metal-associated domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000276)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G05030 AT4G05030
fragaria_vesca FvH4_3g24080 FvH4_3g24080 FvH4_3g24100 FvH4_3g24100 FvH4_3g42050 FvH4_3g42060 FvH4_3g42070 FvH4_3g42071 FvH4_3g42080 FvH4_3g42090 FvH4_3g42100 FvH4_3g42110
malus_domestica MD03G1038100.v1.1 MD03G1038400.v1.1 MD03G1038600.v1.1 MD03G1038900.v1.1 MD03G1039000.v1.1 MD03G1039100.v1.1 MD03G1188500.v1.1 MD10G1233100.v1.1 MD10G1233300.v1.1 MD10G1341200.v1.1 MD11G1039200.v1.1 MD11G1039300.v1.1 MD11G1204400.v1.1 MD11G1204600.v1.1
prunus_persica Prupe.2G123900_v2.0.a1 Prupe.4G001900_v2.0.a1 Prupe.4G234700_v2.0.a1 Prupe.4G234800_v2.0.a1 Prupe.6G025900_v2.0.a1 Prupe.6G030200_v2.0.a1 Prupe.6G030300_v2.0.a1 Prupe.6G030400_v2.0.a1 Prupe.6G030600_v2.0.a1 Prupe.6G030900_v2.0.a1 Prupe.6G031000_v2.0.a1 Prupe.6G031100_v2.0.a1 Prupe.6G031100_v2.0.a1
pyrus_communis pycom03g02940 pycom03g02950 pycom03g02980 pycom03g02990 pycom03g03010 pycom11g03310 pycom11g03320
rosa_chinensis RchiOBHm_Chr3g0484311 RchiOBHm_Chr5g0000231 RchiOBHm_Chr5g0042661 RchiOBHm_Chr5g0042671 RchiOBHm_Chr5g0075281 RchiOBHm_Chr5g0075291 RchiOBHm_Chr5g0075321 RchiOBHm_Chr5g0075331
rosa_laevigata RLG00000034149 RLG00000036545 RLG00000036546 RLG00000036547 RLG00000036548 RLG00000036549 RLG00000036550
rosa_multiflora Rmu_sc0000295.1_g000011 Rmu_sc0000770.1_g000041 Rmu_sc0000770.1_g000049 Rmu_sc0002564.1_g000002 Rmu_sc0002564.1_g000003 Rmu_sc0002564.1_g000016
rosa_roxburghii Rroxscaffold_1G00006200 Rroxscaffold_1G00006210 Rroxscaffold_1G00006220 Rroxscaffold_1G00006250 Rroxscaffold_1G00006270 Rroxscaffold_1G00037900 Rroxscaffold_1G00037980 Rroxscaffold_6G00397790
rosa_rugosa Rorug03G0210600 Rorug05G0203800 Rorug05G0203900 Rorug05G0438100 Rorug05G0438200 Rorug05G0438700 Rorug05G0438900 Rorug05G0438900
rosa_samantha Rh3AG259700 Rh3AG259800 Rh3BG296300 Rh3DG289900 Rh5AG001600 Rh5AG288900 Rh5AG289000 Rh5AG289200 Rh5AG494800 Rh5AG495000 Rh5AG495200 Rh5AG495300 Rh5BG293000 Rh5BG293100 Rh5BG293300 Rh5BG516400 Rh5BG516500 Rh5BG516900 Rh5BG517000 Rh5CG001900 Rh5CG325700 Rh5CG325900 Rh5CG326000 Rh5CG540200 Rh5CG540300 Rh5CG540500 Rh5CG540600 Rh5DG001900 Rh5DG302900 Rh5DG303000 Rh5DG303200 Rh5DG529100 Rh5DG529300 Rh5DG529400 Rh5DG532500
rosa_wichuraiana Rw3G023420 Rw3G023430 Rw5G000210 Rw5G026800 Rw5G045910 Rw5G045920 Rw5G045930 Rw5G045940 Rw5G045950

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 147
AcyI GRCGYC 1 cut(s) 150
AfaI GTAC 2 cut(s) 27, 35
AfiI CCNNNNNNNGG 1 cut(s) 55
AgsI TTSAA 1 cut(s) 187
AluBI AGCT 1 cut(s) 93
AluI AGCT 1 cut(s) 93
Asp700I GAANNNNTTC 1 cut(s) 182
AspLEI GCGC 1 cut(s) 61
AsuHPI GGTGA 2 cut(s) 142, 196
AxyI CCTNAGG 1 cut(s) 173
BccI CCATC 1 cut(s) 161
BfoI RGCGCY 1 cut(s) 62
BsaHI GRCGYC 1 cut(s) 150
Bsc4I CCNNNNNNNGG 1 cut(s) 55
Bse21I CCTNAGG 1 cut(s) 173
BseLI CCNNNNNNNGG 1 cut(s) 55
BseMII CTCAG 1 cut(s) 164
BseRI GAGGAG 1 cut(s) 125
BsiSI CCGG 1 cut(s) 40
BslI CCNNNNNNNGG 1 cut(s) 55
BspCNI CTCAG 1 cut(s) 165
BssNI GRCGYC 1 cut(s) 150
Bst4CI ACNGT 1 cut(s) 208
BstACI GRCGYC 1 cut(s) 150
BstDEI CTNAG 2 cut(s) 165, 173
BstH2I RGCGCY 1 cut(s) 62
BstHHI GCGC 1 cut(s) 61
BstMWI GCNNNNNNNGC 1 cut(s) 45
BstXI CCANNNNNNTGG 1 cut(s) 160
Bsu36I CCTNAGG 1 cut(s) 173
CfoI GCGC 1 cut(s) 61
CseI GACGC 2 cut(s) 112, 158
Csp6I GTAC 2 cut(s) 26, 34
CviJI RGCY 3 cut(s) 93, 164, 171
CviKI_1 RGCY 3 cut(s) 93, 164, 171
CviQI GTAC 2 cut(s) 26, 34
DdeI CTNAG 2 cut(s) 165, 173
Eco81I CCTNAGG 1 cut(s) 173
FaiI YATR 1 cut(s) 98
FblI GTMKAC 1 cut(s) 147
GlaI GCGC 1 cut(s) 60
HaeII RGCGCY 1 cut(s) 62
HapII CCGG 1 cut(s) 40
HgaI GACGC 2 cut(s) 112, 158
HhaI GCGC 1 cut(s) 61
Hin1I GRCGYC 1 cut(s) 150
Hin6I GCGC 1 cut(s) 59
HinP1I GCGC 1 cut(s) 59
HpaII CCGG 1 cut(s) 40
HphI GGTGA 2 cut(s) 142, 196
Hpy166II GTNNAC 1 cut(s) 148
Hpy188III TCNNGA 1 cut(s) 187
Hpy8I GTNNAC 1 cut(s) 148
Hpy99I CGWCG 1 cut(s) 128
HpyAV CCTTC 2 cut(s) 49, 109
HpyCH4III ACNGT 1 cut(s) 208
HpyCH4V TGCA 1 cut(s) 212
HpyF10VI GCNNNNNNNGC 1 cut(s) 45
HpyF3I CTNAG 2 cut(s) 165, 173
Hsp92I GRCGYC 1 cut(s) 150
HspAI GCGC 1 cut(s) 59
LpnPI CCDG 2 cut(s) 53, 185
MboII GAAGA 1 cut(s) 190
MluCI AATT 1 cut(s) 66
MnlI CCTC 4 cut(s) 103, 133, 168, 208
MroXI GAANNNNTTC 1 cut(s) 182
MspI CCGG 1 cut(s) 40
MwoI GCNNNNNNNGC 1 cut(s) 45
PdmI GAANNNNTTC 1 cut(s) 182
PflFI GACNNNGTC 1 cut(s) 122
PsyI GACNNNGTC 1 cut(s) 122
RsaI GTAC 2 cut(s) 27, 35
RsaNI GTAC 2 cut(s) 26, 34
SetI ASST 2 cut(s) 95, 219
SgeI CNNG 5 cut(s) 52, 139, 169, 184, 199
Sse9I AATT 1 cut(s) 66
TaaI ACNGT 1 cut(s) 208
TasI AATT 1 cut(s) 66
TatI WGTACW 1 cut(s) 33
TspDTI ATGAA 2 cut(s) 17, 35
Tth111I GACNNNGTC 1 cut(s) 122
XmiI GTMKAC 1 cut(s) 147
XmnI GAANNNNTTC 1 cut(s) 182
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.