RLG00000036550

transposition, RNA-mediated

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr7
OG0000276
Physical Location & Seq
Reverse (-)
81831438 .. 81832134
697 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000036550

Sequence Viewer

Length: 357 bp
ATGCAAATGATACTCGTGAAGTTGCACATTCATTGCGACAAATGCAGAACCAAGGCTTTAAAGATTGCAGCAACTGCACCAGGTGTGAACAGAGTGTCGATTGAAGGTGATCATATGGAGGTGATTGGGAATGGAGTTGACTCGGTTTGCTTGACTAGGGCTTTAAGGAAGAAGCTTGGCTTCGCCAATATAATCAAAGTCGAACAAGTGGGAGAATCCACAGCCATTACTGAGGAAGAAAACCCGACTCCGATTCAATATTGCACTACTACATCAATCTATAGTCATTTTCAACATCCTTCGGTAGTTTGTCCAATGTACTATCATGAACCAACTGATAACTGCTCTATTATGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
HMA

Protein Analysis

119

Amino Acids

13.12

Weight (kDa)

6.57

Isoelectric Point (pI)

40.03

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000276)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G05030 AT4G05030
fragaria_vesca FvH4_3g24080 FvH4_3g24080 FvH4_3g24100 FvH4_3g24100 FvH4_3g42050 FvH4_3g42060 FvH4_3g42070 FvH4_3g42071 FvH4_3g42080 FvH4_3g42090 FvH4_3g42100 FvH4_3g42110
malus_domestica MD03G1038100.v1.1 MD03G1038400.v1.1 MD03G1038600.v1.1 MD03G1038900.v1.1 MD03G1039000.v1.1 MD03G1039100.v1.1 MD03G1188500.v1.1 MD10G1233100.v1.1 MD10G1233300.v1.1 MD10G1341200.v1.1 MD11G1039200.v1.1 MD11G1039300.v1.1 MD11G1204400.v1.1 MD11G1204600.v1.1
prunus_persica Prupe.2G123900_v2.0.a1 Prupe.4G001900_v2.0.a1 Prupe.4G234700_v2.0.a1 Prupe.4G234800_v2.0.a1 Prupe.6G025900_v2.0.a1 Prupe.6G030200_v2.0.a1 Prupe.6G030300_v2.0.a1 Prupe.6G030400_v2.0.a1 Prupe.6G030600_v2.0.a1 Prupe.6G030900_v2.0.a1 Prupe.6G031000_v2.0.a1 Prupe.6G031100_v2.0.a1 Prupe.6G031100_v2.0.a1
pyrus_communis pycom03g02940 pycom03g02950 pycom03g02980 pycom03g02990 pycom03g03010 pycom11g03310 pycom11g03320
rosa_chinensis RchiOBHm_Chr3g0484311 RchiOBHm_Chr5g0000231 RchiOBHm_Chr5g0042661 RchiOBHm_Chr5g0042671 RchiOBHm_Chr5g0075281 RchiOBHm_Chr5g0075291 RchiOBHm_Chr5g0075321 RchiOBHm_Chr5g0075331
rosa_laevigata RLG00000034149 RLG00000036545 RLG00000036546 RLG00000036547 RLG00000036548 RLG00000036549 RLG00000036550
rosa_multiflora Rmu_sc0000295.1_g000011 Rmu_sc0000770.1_g000041 Rmu_sc0000770.1_g000049 Rmu_sc0002564.1_g000002 Rmu_sc0002564.1_g000003 Rmu_sc0002564.1_g000016
rosa_roxburghii Rroxscaffold_1G00006200 Rroxscaffold_1G00006210 Rroxscaffold_1G00006220 Rroxscaffold_1G00006250 Rroxscaffold_1G00006270 Rroxscaffold_1G00037900 Rroxscaffold_1G00037980 Rroxscaffold_6G00397790
rosa_rugosa Rorug03G0210600 Rorug05G0203800 Rorug05G0203900 Rorug05G0438100 Rorug05G0438200 Rorug05G0438700 Rorug05G0438900 Rorug05G0438900
rosa_samantha Rh3AG259700 Rh3AG259800 Rh3BG296300 Rh3DG289900 Rh5AG001600 Rh5AG288900 Rh5AG289000 Rh5AG289200 Rh5AG494800 Rh5AG495000 Rh5AG495200 Rh5AG495300 Rh5BG293000 Rh5BG293100 Rh5BG293300 Rh5BG516400 Rh5BG516500 Rh5BG516900 Rh5BG517000 Rh5CG001900 Rh5CG325700 Rh5CG325900 Rh5CG326000 Rh5CG540200 Rh5CG540300 Rh5CG540500 Rh5CG540600 Rh5DG001900 Rh5DG302900 Rh5DG303000 Rh5DG303200 Rh5DG529100 Rh5DG529300 Rh5DG529400 Rh5DG532500
rosa_wichuraiana Rw3G023420 Rw3G023430 Rw5G000210 Rw5G026800 Rw5G045910 Rw5G045920 Rw5G045930 Rw5G045940 Rw5G045950

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AdeI CACNNNGTG 1 cut(s) 83
AfaI GTAC 1 cut(s) 320
AgsI TTSAA 3 cut(s) 104, 257, 293
AjnI CCWGG 1 cut(s) 79
AluBI AGCT 1 cut(s) 175
AluI AGCT 1 cut(s) 175
AlwNI CAGNNNCTG 1 cut(s) 74
ApeKI GCWGC 1 cut(s) 68
AsuHPI GGTGA 2 cut(s) 119, 133
BauI CACGAG 1 cut(s) 14
BbvI GCAGC 1 cut(s) 80
BciT130I CCWGG 1 cut(s) 81
BclI TGATCA 1 cut(s) 109
BfaI CTAG 1 cut(s) 156
BfmI CTRYAG 1 cut(s) 280
BisI GCNGC 1 cut(s) 69
BlsI GCNGC 1 cut(s) 70
Bme1390I CCNGG 1 cut(s) 81
BmrFI CCNGG 1 cut(s) 81
BsaJI CCNNGG 1 cut(s) 51
Bse3DI GCAATG 1 cut(s) 31
BseBI CCWGG 1 cut(s) 81
BseDI CCNNGG 1 cut(s) 51
BseGI GGATG 1 cut(s) 295
BseMI GCAATG 1 cut(s) 31
BseMII CTCAG 1 cut(s) 222
BseXI GCAGC 1 cut(s) 80
BsgI GTGCAG 1 cut(s) 60
Bsp143I GATC 1 cut(s) 109
BspCNI CTCAG 1 cut(s) 223
BspHI TCATGA 1 cut(s) 325
BsrDI GCAATG 1 cut(s) 31
BssECI CCNNGG 1 cut(s) 51
BssMI GATC 1 cut(s) 109
BssSI CACGAG 1 cut(s) 14
BssT1I CCWWGG 1 cut(s) 51
Bst2BI CACGAG 1 cut(s) 14
Bst2UI CCWGG 1 cut(s) 81
BstAPI GCANNNNNTGC 1 cut(s) 74
BstDEI CTNAG 1 cut(s) 231
BstF5I GGATG 1 cut(s) 295
BstKTI GATC 1 cut(s) 112
BstMBI GATC 1 cut(s) 109
BstMWI GCNNNNNNNGC 2 cut(s) 42, 74
BstNI CCWGG 1 cut(s) 81
BstSCI CCNGG 1 cut(s) 79
BstSFI CTRYAG 1 cut(s) 280
BstV1I GCAGC 1 cut(s) 80
BtsCI GGATG 1 cut(s) 295
CaiI CAGNNNCTG 1 cut(s) 74
CciI TCATGA 1 cut(s) 325
CsiI ACCWGGT 1 cut(s) 79
Csp6I GTAC 1 cut(s) 319
CviAII CATG 1 cut(s) 326
CviJI RGCY 5 cut(s) 56, 161, 175, 180, 224
CviKI_1 RGCY 5 cut(s) 56, 161, 175, 180, 224
CviQI GTAC 1 cut(s) 319
DdeI CTNAG 1 cut(s) 231
DpnI GATC 1 cut(s) 111
DpnII GATC 1 cut(s) 109
DraI TTTAAA 1 cut(s) 60
DraIII CACNNNGTG 1 cut(s) 83
Eco130I CCWWGG 1 cut(s) 51
EcoRII CCWGG 1 cut(s) 79
EcoT14I CCWWGG 1 cut(s) 51
ErhI CCWWGG 1 cut(s) 51
FaeI CATG 1 cut(s) 329
FaiI YATR 6 cut(s) 114, 116, 191, 282, 327, 353
FalI AAGNNNNNCTT 2 cut(s) 164, 196
FatI CATG 1 cut(s) 325
FauNDI CATATG 1 cut(s) 114
FbaI TGATCA 1 cut(s) 109
Fnu4HI GCNGC 1 cut(s) 69
FokI GGATG 1 cut(s) 282
Fsp4HI GCNGC 1 cut(s) 69
FspBI CTAG 1 cut(s) 156
GluI GCNGC 1 cut(s) 69
Hin1II CATG 1 cut(s) 329
HincII GTYRAC 1 cut(s) 139
HindII GTYRAC 1 cut(s) 139
HindIII AAGCTT 1 cut(s) 173
HinfI GANTC 4 cut(s) 140, 215, 247, 253
HphI GGTGA 2 cut(s) 119, 133
Hpy166II GTNNAC 2 cut(s) 88, 139
Hpy188I TCNGA 1 cut(s) 252
Hpy188III TCNNGA 2 cut(s) 16, 326
Hpy8I GTNNAC 2 cut(s) 88, 139
HpyAV CCTTC 2 cut(s) 98, 309
HpyCH4V TGCA 6 cut(s) 4, 25, 45, 68, 77, 264
HpyF10VI GCNNNNNNNGC 2 cut(s) 42, 74
HpyF3I CTNAG 1 cut(s) 231
Hsp92II CATG 1 cut(s) 329
Ksp22I TGATCA 1 cut(s) 109
Kzo9I GATC 1 cut(s) 109
LpnPI CCDG 2 cut(s) 66, 93
Lsp1109I GCAGC 1 cut(s) 80
MabI ACCWGGT 1 cut(s) 79
MaeI CTAG 1 cut(s) 156
MalI GATC 1 cut(s) 111
MboI GATC 1 cut(s) 109
MboII GAAGA 2 cut(s) 181, 248
MlyI GAGTC 2 cut(s) 134, 241
MnlI CCTC 2 cut(s) 112, 226
MseI TTAA 2 cut(s) 59, 164
MspR9I CCNGG 1 cut(s) 81
MvaI CCWGG 1 cut(s) 81
MwoI GCNNNNNNNGC 2 cut(s) 42, 74
NdeI CATATG 1 cut(s) 114
NdeII GATC 1 cut(s) 109
NlaIII CATG 1 cut(s) 329
PagI TCATGA 1 cut(s) 325
PfeI GAWTC 2 cut(s) 215, 253
PkrI GCNGC 1 cut(s) 70
PleI GAGTC 2 cut(s) 134, 241
PpsI GAGTC 2 cut(s) 134, 241
Psp6I CCWGG 1 cut(s) 79
PspGI CCWGG 1 cut(s) 79
PstNI CAGNNNCTG 1 cut(s) 74
RsaI GTAC 1 cut(s) 320
RsaNI GTAC 1 cut(s) 319
SaqAI TTAA 2 cut(s) 59, 164
SatI GCNGC 1 cut(s) 69
Sau3AI GATC 1 cut(s) 109
SchI GAGTC 2 cut(s) 134, 241
ScrFI CCNGG 1 cut(s) 81
SetI ASST 4 cut(s) 85, 109, 123, 177
SexAI ACCWGGT 1 cut(s) 79
SfcI CTRYAG 1 cut(s) 280
SspI AATATT 1 cut(s) 260
SspMI CTAG 1 cut(s) 156
StyD4I CCNGG 1 cut(s) 79
StyI CCWWGG 1 cut(s) 51
TaqI TCGA 2 cut(s) 98, 201
TatI WGTACW 1 cut(s) 318
TfiI GAWTC 2 cut(s) 215, 253
Tru1I TTAA 2 cut(s) 59, 164
Tru9I TTAA 2 cut(s) 59, 164
TseI GCWGC 1 cut(s) 68
TspDTI ATGAA 2 cut(s) 20, 342
XspI CTAG 1 cut(s) 156
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.