Rorug05G0203800

transposition, RNA-mediated

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000005
OG0000276
Physical Location & Seq
Forward (+)
20237009 .. 20237956
948 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug05G0203800.1

Sequence Viewer

Length: 693 bp
ATGGAGGGTGTTTTGTCGAATTTTATCTTGGAGAATACAAAATCTCTAGTCAAAGCCAATATCCATGTCTATTTTCATGATGATGATGAGCAAGATGCCTCTGCTAACTGTGCAACTAAGTTTCTGGCAGGAATTTCTAGTGTGCAATATATGTCTCTTTCATCTCATTTCTTTCAGGCTTGTTCTCCGCCAGCTTTTGATAATTTGAGAAAATTGAAGCTGATTCTTCATCATTGTTGTGACGGTTGGGAATTGCTGATAAAGTTGCTGGAGAGATCACATAATCTAGAATGTCTTGTCTTAGAACATGAGGGTCATCGTCAACCTCGCAATCTCACAGAGCAAGAAAAAAAGGGCATAAGGATTAAACTTCCGGAAGACTTCAAACTTGTAGAGTTCCCAGCTGAGGTTCAATGGAGTCCACCGGAGTCTGTTCCCAAGTGTTTGTTGTCATCTCTCAAGAGTATCTGCATAATGGGGTTCAAGGGAAAGGGAATGTATGGACATCTAGATGAGATGGAAGTGATCAAGTATTTGTTAACAAATGGTCGAGTTTTGGAGAAGATGACTATTTATACTCCTGGTCTTTTCATGTGCACAACAGAGGACTTCTACAAGGAATTTTCATTGTTCGGGTGGGGATCGAAGACTTGTGAAGTTGAGATTGTTAGGAAGATATTTTATTATGGTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
HMA

Protein Analysis

230

Amino Acids

26.44

Weight (kDa)

6.15

Isoelectric Point (pI)

46.51

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
FBD PF08387 142 - 191 2.1e-14 FBD
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000276)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G05030 AT4G05030
fragaria_vesca FvH4_3g24080 FvH4_3g24080 FvH4_3g24100 FvH4_3g24100 FvH4_3g42050 FvH4_3g42060 FvH4_3g42070 FvH4_3g42071 FvH4_3g42080 FvH4_3g42090 FvH4_3g42100 FvH4_3g42110
malus_domestica MD03G1038100.v1.1 MD03G1038400.v1.1 MD03G1038600.v1.1 MD03G1038900.v1.1 MD03G1039000.v1.1 MD03G1039100.v1.1 MD03G1188500.v1.1 MD10G1233100.v1.1 MD10G1233300.v1.1 MD10G1341200.v1.1 MD11G1039200.v1.1 MD11G1039300.v1.1 MD11G1204400.v1.1 MD11G1204600.v1.1
prunus_persica Prupe.2G123900_v2.0.a1 Prupe.4G001900_v2.0.a1 Prupe.4G234700_v2.0.a1 Prupe.4G234800_v2.0.a1 Prupe.6G025900_v2.0.a1 Prupe.6G030200_v2.0.a1 Prupe.6G030300_v2.0.a1 Prupe.6G030400_v2.0.a1 Prupe.6G030600_v2.0.a1 Prupe.6G030900_v2.0.a1 Prupe.6G031000_v2.0.a1 Prupe.6G031100_v2.0.a1 Prupe.6G031100_v2.0.a1
pyrus_communis pycom03g02940 pycom03g02950 pycom03g02980 pycom03g02990 pycom03g03010 pycom11g03310 pycom11g03320
rosa_chinensis RchiOBHm_Chr3g0484311 RchiOBHm_Chr5g0000231 RchiOBHm_Chr5g0042661 RchiOBHm_Chr5g0042671 RchiOBHm_Chr5g0075281 RchiOBHm_Chr5g0075291 RchiOBHm_Chr5g0075321 RchiOBHm_Chr5g0075331
rosa_laevigata RLG00000034149 RLG00000036545 RLG00000036546 RLG00000036547 RLG00000036548 RLG00000036549 RLG00000036550
rosa_multiflora Rmu_sc0000295.1_g000011 Rmu_sc0000770.1_g000041 Rmu_sc0000770.1_g000049 Rmu_sc0002564.1_g000002 Rmu_sc0002564.1_g000003 Rmu_sc0002564.1_g000016
rosa_roxburghii Rroxscaffold_1G00006200 Rroxscaffold_1G00006210 Rroxscaffold_1G00006220 Rroxscaffold_1G00006250 Rroxscaffold_1G00006270 Rroxscaffold_1G00037900 Rroxscaffold_1G00037980 Rroxscaffold_6G00397790
rosa_rugosa Rorug03G0210600 Rorug05G0203800 Rorug05G0203900 Rorug05G0438100 Rorug05G0438200 Rorug05G0438700 Rorug05G0438900 Rorug05G0438900
rosa_samantha Rh3AG259700 Rh3AG259800 Rh3BG296300 Rh3DG289900 Rh5AG001600 Rh5AG288900 Rh5AG289000 Rh5AG289200 Rh5AG494800 Rh5AG495000 Rh5AG495200 Rh5AG495300 Rh5BG293000 Rh5BG293100 Rh5BG293300 Rh5BG516400 Rh5BG516500 Rh5BG516900 Rh5BG517000 Rh5CG001900 Rh5CG325700 Rh5CG325900 Rh5CG326000 Rh5CG540200 Rh5CG540300 Rh5CG540500 Rh5CG540600 Rh5DG001900 Rh5DG302900 Rh5DG303000 Rh5DG303200 Rh5DG529100 Rh5DG529300 Rh5DG529400 Rh5DG532500
rosa_wichuraiana Rw3G023420 Rw3G023430 Rw5G000210 Rw5G026800 Rw5G045910 Rw5G045920 Rw5G045930 Rw5G045940 Rw5G045950

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccIII TCCGGA 1 cut(s) 373
AciI CCGC 1 cut(s) 188
AclWI GGATC 1 cut(s) 649
AcsI RAATTY 3 cut(s) 19, 132, 620
AfiI CCNNNNNNNGG 1 cut(s) 406
AgsI TTSAA 4 cut(s) 217, 385, 413, 484
AjnI CCWGG 1 cut(s) 580
AjuI GAANNNNNNNTTGG 2 cut(s) 11, 43
AluBI AGCT 3 cut(s) 194, 220, 404
AluI AGCT 3 cut(s) 194, 220, 404
Alw21I GWGCWC 1 cut(s) 599
Alw26I GTCTC 1 cut(s) 159
Alw44I GTGCAC 1 cut(s) 595
AlwI GGATC 1 cut(s) 649
Aor13HI TCCGGA 1 cut(s) 373
ApaLI GTGCAC 1 cut(s) 595
ApoI RAATTY 3 cut(s) 19, 132, 620
BaeGI GKGCMC 1 cut(s) 599
BbsI GAAGAC 2 cut(s) 384, 653
Bbv12I GWGCWC 1 cut(s) 599
BbvCI CCTCAGC 1 cut(s) 405
BccI CCATC 1 cut(s) 511
BciT130I CCWGG 1 cut(s) 582
BclI TGATCA 1 cut(s) 525
BcoDI GTCTC 1 cut(s) 159
BfaI CTAG 4 cut(s) 47, 138, 287, 509
Bme1390I CCNGG 1 cut(s) 582
BmrFI CCNGG 1 cut(s) 582
BmsI GCATC 1 cut(s) 85
BpiI GAAGAC 2 cut(s) 384, 653
BpmI CTGGAG 1 cut(s) 290
Bpu10I CCTNAGC 1 cut(s) 405
BpuEI CTTGAG 1 cut(s) 443
BsaWI WCCGGW 2 cut(s) 373, 424
Bsc4I CCNNNNNNNGG 1 cut(s) 406
BseAI TCCGGA 1 cut(s) 373
BseBI CCWGG 1 cut(s) 582
BseLI CCNNNNNNNGG 1 cut(s) 406
BseMII CTCAG 1 cut(s) 396
BseSI GKGCMC 1 cut(s) 599
BseYI CCCAGC 1 cut(s) 400
BsiHKAI GWGCWC 1 cut(s) 599
BsiSI CCGG 2 cut(s) 374, 425
BslI CCNNNNNNNGG 1 cut(s) 406
BsmAI GTCTC 1 cut(s) 159
Bsp1286I GDGCHC 1 cut(s) 599
Bsp13I TCCGGA 1 cut(s) 373
Bsp143I GATC 3 cut(s) 275, 525, 641
BspACI CCGC 1 cut(s) 188
BspCNI CTCAG 1 cut(s) 397
BspEI TCCGGA 1 cut(s) 373
BspHI TCATGA 1 cut(s) 76
BspPI GGATC 1 cut(s) 649
BssMI GATC 3 cut(s) 275, 525, 641
Bst2UI CCWGG 1 cut(s) 582
Bst4CI ACNGT 2 cut(s) 110, 245
BstC8I GCNNGC 1 cut(s) 192
BstDEI CTNAG 3 cut(s) 117, 301, 405
BstKTI GATC 3 cut(s) 278, 528, 644
BstMAI GTCTC 1 cut(s) 159
BstMBI GATC 3 cut(s) 275, 525, 641
BstMWI GCNNNNNNNGC 1 cut(s) 110
BstNI CCWGG 1 cut(s) 582
BstSCI CCNGG 1 cut(s) 580
BstSLI GKGCMC 1 cut(s) 599
BstV2I GAAGAC 2 cut(s) 384, 653
Cac8I GCNNGC 1 cut(s) 192
CciI TCATGA 1 cut(s) 76
CviAII CATG 4 cut(s) 65, 77, 308, 592
CviJI RGCY 5 cut(s) 56, 179, 194, 220, 404
CviKI_1 RGCY 5 cut(s) 56, 179, 194, 220, 404
DdeI CTNAG 3 cut(s) 117, 301, 405
DpnI GATC 3 cut(s) 277, 527, 643
DpnII GATC 3 cut(s) 275, 525, 641
EciI GGCGGA 1 cut(s) 177
EcoRII CCWGG 1 cut(s) 580
FaeI CATG 4 cut(s) 68, 80, 311, 595
FatI CATG 4 cut(s) 64, 76, 307, 591
FbaI TGATCA 1 cut(s) 525
FspBI CTAG 4 cut(s) 47, 138, 287, 509
GsaI CCCAGC 1 cut(s) 404
GsuI CTGGAG 1 cut(s) 290
HapII CCGG 2 cut(s) 374, 425
Hin1II CATG 4 cut(s) 68, 80, 311, 595
HincII GTYRAC 2 cut(s) 323, 540
HindII GTYRAC 2 cut(s) 323, 540
HinfI GANTC 3 cut(s) 223, 418, 428
HpaI GTTAAC 1 cut(s) 540
HpaII CCGG 2 cut(s) 374, 425
Hpy166II GTNNAC 4 cut(s) 323, 422, 540, 597
Hpy188III TCNNGA 5 cut(s) 77, 287, 374, 460, 509
Hpy8I GTNNAC 4 cut(s) 323, 422, 540, 597
HpyCH4III ACNGT 2 cut(s) 110, 245
HpyCH4V TGCA 4 cut(s) 113, 145, 471, 597
HpyF10VI GCNNNNNNNGC 1 cut(s) 110
HpyF3I CTNAG 3 cut(s) 117, 301, 405
Hsp92II CATG 4 cut(s) 68, 80, 311, 595
Kpn2I TCCGGA 1 cut(s) 373
Ksp22I TGATCA 1 cut(s) 525
KspAI GTTAAC 1 cut(s) 540
Kzo9I GATC 3 cut(s) 275, 525, 641
LweI GCATC 1 cut(s) 85
MaeI CTAG 4 cut(s) 47, 138, 287, 509
MaeIII GTNAC 1 cut(s) 239
MalI GATC 3 cut(s) 277, 527, 643
MboI GATC 3 cut(s) 275, 525, 641
MboII GAAGA 5 cut(s) 218, 389, 574, 658, 685
MhlI GDGCHC 1 cut(s) 599
MluCI AATT 6 cut(s) 19, 132, 202, 212, 251, 620
MlyI GAGTC 2 cut(s) 427, 437
MnlI CCTC 5 cut(s) 109, 304, 336, 400, 598
MroI TCCGGA 1 cut(s) 373
MseI TTAA 2 cut(s) 366, 539
MslI CAYNNNNRTG 3 cut(s) 81, 237, 510
MspA1I CMGCKG 1 cut(s) 404
MspI CCGG 2 cut(s) 374, 425
MspR9I CCNGG 1 cut(s) 582
MvaI CCWGG 1 cut(s) 582
MwoI GCNNNNNNNGC 1 cut(s) 110
NdeII GATC 3 cut(s) 275, 525, 641
NlaIII CATG 4 cut(s) 68, 80, 311, 595
NmuCI GTSAC 1 cut(s) 239
PagI TCATGA 1 cut(s) 76
PfeI GAWTC 1 cut(s) 223
PleI GAGTC 2 cut(s) 426, 436
PpsI GAGTC 2 cut(s) 426, 436
Psp6I CCWGG 1 cut(s) 580
PspFI CCCAGC 1 cut(s) 400
PspGI CCWGG 1 cut(s) 580
PvuII CAGCTG 1 cut(s) 404
RseI CAYNNNNRTG 3 cut(s) 81, 237, 510
SaqAI TTAA 2 cut(s) 366, 539
Sau3AI GATC 3 cut(s) 275, 525, 641
SchI GAGTC 2 cut(s) 427, 437
ScrFI CCNGG 1 cut(s) 582
SduI GDGCHC 1 cut(s) 599
SetI ASST 5 cut(s) 196, 222, 328, 406, 411
SfaNI GCATC 1 cut(s) 85
SmiMI CAYNNNNRTG 3 cut(s) 81, 237, 510
SmlI CTYRAG 1 cut(s) 458
SmoI CTYRAG 1 cut(s) 458
Sse9I AATT 6 cut(s) 19, 132, 202, 212, 251, 620
SsiI CCGC 1 cut(s) 188
SspMI CTAG 4 cut(s) 47, 138, 287, 509
StyD4I CCNGG 1 cut(s) 580
TaaI ACNGT 2 cut(s) 110, 245
TaqI TCGA 3 cut(s) 17, 550, 644
TasI AATT 6 cut(s) 19, 132, 202, 212, 251, 620
TfiI GAWTC 1 cut(s) 223
Tru1I TTAA 2 cut(s) 366, 539
Tru9I TTAA 2 cut(s) 366, 539
TseFI GTSAC 1 cut(s) 239
Tsp45I GTSAC 1 cut(s) 239
TspDTI ATGAA 5 cut(s) 65, 150, 218, 580, 615
VneI GTGCAC 1 cut(s) 595
XapI RAATTY 3 cut(s) 19, 132, 620
XbaI TCTAGA 2 cut(s) 286, 508
XspI CTAG 4 cut(s) 47, 138, 287, 509
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.