MD10G1341200.v1.1

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr10
OG0000276
Physical Location & Seq
Reverse (-)
41624391 .. 41624913
523 bp
Loading structure...
UTR
Exon/CDS
Intron
MD10G1341200.v1.1.491

Sequence Viewer

Length: 207 bp
ATGAAGGTACCGATGAATTGCCGGAAATGCCAAACAAAGGCGCTCAAAATTGCTGCTAAAGTAGATGGTGTGAGGTCTGTGGCGTTGGGAGAGGAAAAAGACAGAGTGGTGGTGATTGGGGAGGGAGTGGACGCCATTAAGTTGGTCAAGAGCTTACGGAAGAAATTCAAGGCCGCCGACATTATCACCGTCGCAGAAGTCAAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
HMA

Protein Analysis

69

Amino Acids

7.39

Weight (kDa)

9.88

Isoelectric Point (pI)

4.59

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
HMA PF00403 3 - 54 5.3e-07 Heavy-metal-associated domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000276)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G05030 AT4G05030
fragaria_vesca FvH4_3g24080 FvH4_3g24080 FvH4_3g24100 FvH4_3g24100 FvH4_3g42050 FvH4_3g42060 FvH4_3g42070 FvH4_3g42071 FvH4_3g42080 FvH4_3g42090 FvH4_3g42100 FvH4_3g42110
malus_domestica MD03G1038100.v1.1 MD03G1038400.v1.1 MD03G1038600.v1.1 MD03G1038900.v1.1 MD03G1039000.v1.1 MD03G1039100.v1.1 MD03G1188500.v1.1 MD10G1233100.v1.1 MD10G1233300.v1.1 MD10G1341200.v1.1 MD11G1039200.v1.1 MD11G1039300.v1.1 MD11G1204400.v1.1 MD11G1204600.v1.1
prunus_persica Prupe.2G123900_v2.0.a1 Prupe.4G001900_v2.0.a1 Prupe.4G234700_v2.0.a1 Prupe.4G234800_v2.0.a1 Prupe.6G025900_v2.0.a1 Prupe.6G030200_v2.0.a1 Prupe.6G030300_v2.0.a1 Prupe.6G030400_v2.0.a1 Prupe.6G030600_v2.0.a1 Prupe.6G030900_v2.0.a1 Prupe.6G031000_v2.0.a1 Prupe.6G031100_v2.0.a1 Prupe.6G031100_v2.0.a1
pyrus_communis pycom03g02940 pycom03g02950 pycom03g02980 pycom03g02990 pycom03g03010 pycom11g03310 pycom11g03320
rosa_chinensis RchiOBHm_Chr3g0484311 RchiOBHm_Chr5g0000231 RchiOBHm_Chr5g0042661 RchiOBHm_Chr5g0042671 RchiOBHm_Chr5g0075281 RchiOBHm_Chr5g0075291 RchiOBHm_Chr5g0075321 RchiOBHm_Chr5g0075331
rosa_laevigata RLG00000034149 RLG00000036545 RLG00000036546 RLG00000036547 RLG00000036548 RLG00000036549 RLG00000036550
rosa_multiflora Rmu_sc0000295.1_g000011 Rmu_sc0000770.1_g000041 Rmu_sc0000770.1_g000049 Rmu_sc0002564.1_g000002 Rmu_sc0002564.1_g000003 Rmu_sc0002564.1_g000016
rosa_roxburghii Rroxscaffold_1G00006200 Rroxscaffold_1G00006210 Rroxscaffold_1G00006220 Rroxscaffold_1G00006250 Rroxscaffold_1G00006270 Rroxscaffold_1G00037900 Rroxscaffold_1G00037980 Rroxscaffold_6G00397790
rosa_rugosa Rorug03G0210600 Rorug05G0203800 Rorug05G0203900 Rorug05G0438100 Rorug05G0438200 Rorug05G0438700 Rorug05G0438900 Rorug05G0438900
rosa_samantha Rh3AG259700 Rh3AG259800 Rh3BG296300 Rh3DG289900 Rh5AG001600 Rh5AG288900 Rh5AG289000 Rh5AG289200 Rh5AG494800 Rh5AG495000 Rh5AG495200 Rh5AG495300 Rh5BG293000 Rh5BG293100 Rh5BG293300 Rh5BG516400 Rh5BG516500 Rh5BG516900 Rh5BG517000 Rh5CG001900 Rh5CG325700 Rh5CG325900 Rh5CG326000 Rh5CG540200 Rh5CG540300 Rh5CG540500 Rh5CG540600 Rh5DG001900 Rh5DG302900 Rh5DG303000 Rh5DG303200 Rh5DG529100 Rh5DG529300 Rh5DG529400 Rh5DG532500
rosa_wichuraiana Rw3G023420 Rw3G023430 Rw5G000210 Rw5G026800 Rw5G045910 Rw5G045920 Rw5G045930 Rw5G045940 Rw5G045950

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 7
AccB1I GGYRCC 1 cut(s) 7
AciI CCGC 1 cut(s) 174
AcsI RAATTY 1 cut(s) 164
AcyI GRCGYC 1 cut(s) 132
AfaI GTAC 1 cut(s) 9
AfiI CCNNNNNNNGG 1 cut(s) 37
AgsI TTSAA 1 cut(s) 169
AluBI AGCT 1 cut(s) 153
AluI AGCT 1 cut(s) 153
AoxI GGCC 1 cut(s) 171
ApeKI GCWGC 1 cut(s) 53
ApoI RAATTY 1 cut(s) 164
Asp700I GAANNNNTTC 1 cut(s) 164
Asp718I GGTACC 1 cut(s) 7
AspLEI GCGC 1 cut(s) 43
AsuHPI GGTGA 2 cut(s) 124, 178
BanI GGYRCC 1 cut(s) 7
BbvI GCAGC 1 cut(s) 40
BccI CCATC 1 cut(s) 59
BfoI RGCGCY 1 cut(s) 44
BisI GCNGC 2 cut(s) 54, 174
BlsI GCNGC 2 cut(s) 55, 175
BmiI GGNNCC 1 cut(s) 9
BsaHI GRCGYC 1 cut(s) 132
Bsc4I CCNNNNNNNGG 1 cut(s) 37
BseLI CCNNNNNNNGG 1 cut(s) 37
BseXI GCAGC 1 cut(s) 40
BshFI GGCC 1 cut(s) 173
BshNI GGYRCC 1 cut(s) 7
BsiSI CCGG 1 cut(s) 22
BslI CCNNNNNNNGG 1 cut(s) 37
BsnI GGCC 1 cut(s) 173
BspACI CCGC 1 cut(s) 174
BspANI GGCC 1 cut(s) 173
BspLI GGNNCC 1 cut(s) 9
BspT107I GGYRCC 1 cut(s) 7
BssNI GRCGYC 1 cut(s) 132
Bst4CI ACNGT 1 cut(s) 190
BstACI GRCGYC 1 cut(s) 132
BstH2I RGCGCY 1 cut(s) 44
BstHHI GCGC 1 cut(s) 43
BstMWI GCNNNNNNNGC 1 cut(s) 27
BstV1I GCAGC 1 cut(s) 40
BstXI CCANNNNNNTGG 1 cut(s) 142
BsuRI GGCC 1 cut(s) 173
CfoI GCGC 1 cut(s) 43
CseI GACGC 1 cut(s) 140
Csp6I GTAC 1 cut(s) 8
CviJI RGCY 2 cut(s) 153, 173
CviKI_1 RGCY 2 cut(s) 153, 173
CviQI GTAC 1 cut(s) 8
Fnu4HI GCNGC 2 cut(s) 54, 174
Fsp4HI GCNGC 2 cut(s) 54, 174
GlaI GCGC 1 cut(s) 42
GluI GCNGC 2 cut(s) 54, 174
HaeII RGCGCY 1 cut(s) 44
HaeIII GGCC 1 cut(s) 173
HapII CCGG 1 cut(s) 22
HgaI GACGC 1 cut(s) 140
HhaI GCGC 1 cut(s) 43
Hin1I GRCGYC 1 cut(s) 132
Hin6I GCGC 1 cut(s) 41
HinP1I GCGC 1 cut(s) 41
HpaII CCGG 1 cut(s) 22
HphI GGTGA 2 cut(s) 124, 178
Hpy166II GTNNAC 1 cut(s) 130
Hpy188III TCNNGA 1 cut(s) 148
Hpy8I GTNNAC 1 cut(s) 130
Hpy99I CGWCG 1 cut(s) 194
HpyCH4III ACNGT 1 cut(s) 190
HpyF10VI GCNNNNNNNGC 1 cut(s) 27
Hsp92I GRCGYC 1 cut(s) 132
HspAI GCGC 1 cut(s) 41
KpnI GGTACC 1 cut(s) 11
LpnPI CCDG 1 cut(s) 35
Lsp1109I GCAGC 1 cut(s) 40
MboII GAAGA 1 cut(s) 172
MluCI AATT 3 cut(s) 16, 48, 164
MnlI CCTC 3 cut(s) 66, 85, 115
MroXI GAANNNNTTC 1 cut(s) 164
MseI TTAA 1 cut(s) 138
MspI CCGG 1 cut(s) 22
MwoI GCNNNNNNNGC 1 cut(s) 27
NlaIV GGNNCC 1 cut(s) 9
PdmI GAANNNNTTC 1 cut(s) 164
PkrI GCNGC 2 cut(s) 55, 175
PspN4I GGNNCC 1 cut(s) 9
RsaI GTAC 1 cut(s) 9
RsaNI GTAC 1 cut(s) 8
SaqAI TTAA 1 cut(s) 138
SatI GCNGC 2 cut(s) 54, 174
SetI ASST 3 cut(s) 9, 77, 155
SgeI CNNG 3 cut(s) 34, 160, 181
Sse9I AATT 3 cut(s) 16, 48, 164
SsiI CCGC 1 cut(s) 174
TaaI ACNGT 1 cut(s) 190
TasI AATT 3 cut(s) 16, 48, 164
TauI GCSGC 1 cut(s) 176
Tru1I TTAA 1 cut(s) 138
Tru9I TTAA 1 cut(s) 138
TseI GCWGC 1 cut(s) 53
TspDTI ATGAA 2 cut(s) 17, 29
TspGWI ACGGA 1 cut(s) 172
XapI RAATTY 1 cut(s) 164
XmnI GAANNNNTTC 1 cut(s) 164
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.