MD03G1038600.v1.1

transposition, RNA-mediated

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr03
OG0000276
Physical Location & Seq
Forward (+)
3063999 .. 3073700
9702 bp
Loading structure...
UTR
Exon/CDS
Intron
MD03G1038600.v1.1.491

Sequence Viewer

Length: 378 bp
ATGCACTGTGACAAATGCAGAACCAAGGCCTTGAAGATTGCAGCTGCTGCACACGGTGTTAGTAAAGTGTCGATAGACAAAGATCTTGTGGAGGTGATCGGGGATGATGTAGACCCGTTCTGCTTGATGAAGTCATTGAGGAAAAGGTTCGGCTGTTGCTGCGCCCTAGTCAAAGTTGAAGAAGTAAAGCCGCCACCTCGTCCACCTCGTCCACCTCCTCCACCTCCTCCAGCAAGCTGTGTTCAAAACTGTTGCACTTGCACTCCCCATTGTCGTTCAATGTACTGTGTTCAATACTGTTGCACTCCTCAGTTTCGTCCAATGTACTGTGAACTGGTTCATGAATATCCAGAACCACCAACTTGCTCCATAATGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
HMA

Protein Analysis

126

Amino Acids

13.94

Weight (kDa)

8.33

Isoelectric Point (pI)

58.34

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000276)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G05030 AT4G05030
fragaria_vesca FvH4_3g24080 FvH4_3g24080 FvH4_3g24100 FvH4_3g24100 FvH4_3g42050 FvH4_3g42060 FvH4_3g42070 FvH4_3g42071 FvH4_3g42080 FvH4_3g42090 FvH4_3g42100 FvH4_3g42110
malus_domestica MD03G1038100.v1.1 MD03G1038400.v1.1 MD03G1038600.v1.1 MD03G1038900.v1.1 MD03G1039000.v1.1 MD03G1039100.v1.1 MD03G1188500.v1.1 MD10G1233100.v1.1 MD10G1233300.v1.1 MD10G1341200.v1.1 MD11G1039200.v1.1 MD11G1039300.v1.1 MD11G1204400.v1.1 MD11G1204600.v1.1
prunus_persica Prupe.2G123900_v2.0.a1 Prupe.4G001900_v2.0.a1 Prupe.4G234700_v2.0.a1 Prupe.4G234800_v2.0.a1 Prupe.6G025900_v2.0.a1 Prupe.6G030200_v2.0.a1 Prupe.6G030300_v2.0.a1 Prupe.6G030400_v2.0.a1 Prupe.6G030600_v2.0.a1 Prupe.6G030900_v2.0.a1 Prupe.6G031000_v2.0.a1 Prupe.6G031100_v2.0.a1 Prupe.6G031100_v2.0.a1
pyrus_communis pycom03g02940 pycom03g02950 pycom03g02980 pycom03g02990 pycom03g03010 pycom11g03310 pycom11g03320
rosa_chinensis RchiOBHm_Chr3g0484311 RchiOBHm_Chr5g0000231 RchiOBHm_Chr5g0042661 RchiOBHm_Chr5g0042671 RchiOBHm_Chr5g0075281 RchiOBHm_Chr5g0075291 RchiOBHm_Chr5g0075321 RchiOBHm_Chr5g0075331
rosa_laevigata RLG00000034149 RLG00000036545 RLG00000036546 RLG00000036547 RLG00000036548 RLG00000036549 RLG00000036550
rosa_multiflora Rmu_sc0000295.1_g000011 Rmu_sc0000770.1_g000041 Rmu_sc0000770.1_g000049 Rmu_sc0002564.1_g000002 Rmu_sc0002564.1_g000003 Rmu_sc0002564.1_g000016
rosa_roxburghii Rroxscaffold_1G00006200 Rroxscaffold_1G00006210 Rroxscaffold_1G00006220 Rroxscaffold_1G00006250 Rroxscaffold_1G00006270 Rroxscaffold_1G00037900 Rroxscaffold_1G00037980 Rroxscaffold_6G00397790
rosa_rugosa Rorug03G0210600 Rorug05G0203800 Rorug05G0203900 Rorug05G0438100 Rorug05G0438200 Rorug05G0438700 Rorug05G0438900 Rorug05G0438900
rosa_samantha Rh3AG259700 Rh3AG259800 Rh3BG296300 Rh3DG289900 Rh5AG001600 Rh5AG288900 Rh5AG289000 Rh5AG289200 Rh5AG494800 Rh5AG495000 Rh5AG495200 Rh5AG495300 Rh5BG293000 Rh5BG293100 Rh5BG293300 Rh5BG516400 Rh5BG516500 Rh5BG516900 Rh5BG517000 Rh5CG001900 Rh5CG325700 Rh5CG325900 Rh5CG326000 Rh5CG540200 Rh5CG540300 Rh5CG540500 Rh5CG540600 Rh5DG001900 Rh5DG302900 Rh5DG303000 Rh5DG303200 Rh5DG529100 Rh5DG529300 Rh5DG529400 Rh5DG532500
rosa_wichuraiana Rw3G023420 Rw3G023430 Rw5G000210 Rw5G026800 Rw5G045910 Rw5G045920 Rw5G045930 Rw5G045940 Rw5G045950

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 111
AciI CCGC 1 cut(s) 191
AdeI CACNNNGTG 1 cut(s) 56
AfaI GTAC 2 cut(s) 284, 326
AgsI TTSAA 5 cut(s) 34, 179, 245, 279, 293
AluBI AGCT 2 cut(s) 44, 237
AluI AGCT 2 cut(s) 44, 237
AlwNI CAGNNNCTG 1 cut(s) 47
AoxI GGCC 1 cut(s) 27
ApeKI GCWGC 4 cut(s) 41, 44, 47, 159
Asp700I GAANNNNTTC 2 cut(s) 146, 336
AspLEI GCGC 1 cut(s) 164
AsuHPI GGTGA 1 cut(s) 106
BbvI GCAGC 4 cut(s) 31, 34, 53, 146
BfaI CTAG 1 cut(s) 167
BglII AGATCT 1 cut(s) 82
BisI GCNGC 5 cut(s) 42, 45, 48, 160, 191
BlsI GCNGC 5 cut(s) 43, 46, 49, 161, 192
BpmI CTGGAG 1 cut(s) 213
BsaJI CCNNGG 1 cut(s) 24
BsaXI ACNNNNNCTCC 2 cut(s) 247, 277
Bse1I ACTGG 1 cut(s) 339
BseDI CCNNGG 1 cut(s) 24
BseGI GGATG 1 cut(s) 109
BseMII CTCAG 1 cut(s) 323
BseNI ACTGG 1 cut(s) 339
BseRI GAGGAG 3 cut(s) 207, 216, 297
BseXI GCAGC 4 cut(s) 31, 34, 53, 146
BsgI GTGCAG 1 cut(s) 33
BshFI GGCC 1 cut(s) 29
BsnI GGCC 1 cut(s) 29
Bsp143I GATC 2 cut(s) 82, 96
BspACI CCGC 1 cut(s) 191
BspANI GGCC 1 cut(s) 29
BspCNI CTCAG 1 cut(s) 322
BspHI TCATGA 1 cut(s) 340
BsrI ACTGG 1 cut(s) 339
BssECI CCNNGG 1 cut(s) 24
BssMI GATC 2 cut(s) 82, 96
BssT1I CCWWGG 1 cut(s) 24
Bst4CI ACNGT 6 cut(s) 8, 56, 251, 287, 299, 329
BstAPI GCANNNNNTGC 1 cut(s) 47
BstC8I GCNNGC 1 cut(s) 235
BstDEI CTNAG 1 cut(s) 309
BstF5I GGATG 1 cut(s) 109
BstHHI GCGC 1 cut(s) 164
BstKTI GATC 2 cut(s) 85, 99
BstMBI GATC 2 cut(s) 82, 96
BstMWI GCNNNNNNNGC 2 cut(s) 47, 159
BstV1I GCAGC 4 cut(s) 31, 34, 53, 146
BstX2I RGATCY 1 cut(s) 82
BstYI RGATCY 1 cut(s) 82
BsuRI GGCC 1 cut(s) 29
BtsCI GGATG 1 cut(s) 109
BtsIMutI CAGTG 1 cut(s) 4
Cac8I GCNNGC 1 cut(s) 235
CaiI CAGNNNCTG 1 cut(s) 47
CciI TCATGA 1 cut(s) 340
CfoI GCGC 1 cut(s) 164
Csp6I GTAC 2 cut(s) 283, 325
CviAII CATG 1 cut(s) 341
CviJI RGCY 5 cut(s) 29, 44, 153, 190, 237
CviKI_1 RGCY 5 cut(s) 29, 44, 153, 190, 237
CviQI GTAC 2 cut(s) 283, 325
DdeI CTNAG 1 cut(s) 309
DpnI GATC 2 cut(s) 84, 98
DpnII GATC 2 cut(s) 82, 96
DraIII CACNNNGTG 1 cut(s) 56
Eco130I CCWWGG 1 cut(s) 24
Eco147I AGGCCT 1 cut(s) 29
EcoT14I CCWWGG 1 cut(s) 24
ErhI CCWWGG 1 cut(s) 24
FaeI CATG 1 cut(s) 344
FaiI YATR 2 cut(s) 342, 371
FatI CATG 1 cut(s) 340
FblI GTMKAC 1 cut(s) 111
Fnu4HI GCNGC 5 cut(s) 42, 45, 48, 160, 191
FokI GGATG 1 cut(s) 116
Fsp4HI GCNGC 5 cut(s) 42, 45, 48, 160, 191
FspBI CTAG 1 cut(s) 167
GlaI GCGC 1 cut(s) 163
GluI GCNGC 5 cut(s) 42, 45, 48, 160, 191
GsuI CTGGAG 1 cut(s) 213
HaeIII GGCC 1 cut(s) 29
HhaI GCGC 1 cut(s) 164
Hin1II CATG 1 cut(s) 344
Hin6I GCGC 1 cut(s) 162
HinP1I GCGC 1 cut(s) 162
HphI GGTGA 1 cut(s) 106
Hpy166II GTNNAC 4 cut(s) 112, 203, 212, 332
Hpy188III TCNNGA 2 cut(s) 341, 350
Hpy8I GTNNAC 4 cut(s) 112, 203, 212, 332
HpyCH4III ACNGT 6 cut(s) 8, 56, 251, 287, 299, 329
HpyCH4V TGCA 7 cut(s) 4, 18, 41, 50, 255, 261, 303
HpyF10VI GCNNNNNNNGC 2 cut(s) 47, 159
HpyF3I CTNAG 1 cut(s) 309
Hsp92II CATG 1 cut(s) 344
HspAI GCGC 1 cut(s) 162
Kzo9I GATC 2 cut(s) 82, 96
LmnI GCTCC 1 cut(s) 371
LpnPI CCDG 3 cut(s) 243, 320, 363
Lsp1109I GCAGC 4 cut(s) 31, 34, 53, 146
MaeI CTAG 1 cut(s) 167
MaeIII GTNAC 1 cut(s) 8
MalI GATC 2 cut(s) 84, 98
MboI GATC 2 cut(s) 82, 96
MboII GAAGA 2 cut(s) 46, 191
MflI RGATCY 1 cut(s) 82
MnlI CCTC 9 cut(s) 85, 132, 207, 216, 225, 228, 234, 237, 318
MroXI GAANNNNTTC 2 cut(s) 146, 336
MspA1I CMGCKG 1 cut(s) 44
MwoI GCNNNNNNNGC 2 cut(s) 47, 159
NdeII GATC 2 cut(s) 82, 96
NlaIII CATG 1 cut(s) 344
NmuCI GTSAC 1 cut(s) 8
PagI TCATGA 1 cut(s) 340
PceI AGGCCT 1 cut(s) 29
PcsI WCGNNNNNNNCGW 1 cut(s) 205
PdmI GAANNNNTTC 2 cut(s) 146, 336
PkrI GCNGC 5 cut(s) 43, 46, 49, 161, 192
PstNI CAGNNNCTG 1 cut(s) 47
PsuI RGATCY 1 cut(s) 82
PvuII CAGCTG 1 cut(s) 44
RsaI GTAC 2 cut(s) 284, 326
RsaNI GTAC 2 cut(s) 283, 325
SatI GCNGC 5 cut(s) 42, 45, 48, 160, 191
Sau3AI GATC 2 cut(s) 82, 96
SetI ASST 8 cut(s) 46, 96, 149, 199, 208, 217, 226, 239
SseBI AGGCCT 1 cut(s) 29
SsiI CCGC 1 cut(s) 191
SspMI CTAG 1 cut(s) 167
StuI AGGCCT 1 cut(s) 29
StyI CCWWGG 1 cut(s) 24
TaaI ACNGT 6 cut(s) 8, 56, 251, 287, 299, 329
TaqI TCGA 1 cut(s) 71
TatI WGTACW 2 cut(s) 282, 324
TauI GCSGC 1 cut(s) 193
TseFI GTSAC 1 cut(s) 8
TseI GCWGC 4 cut(s) 41, 44, 47, 159
Tsp45I GTSAC 1 cut(s) 8
TspDTI ATGAA 3 cut(s) 143, 329, 357
XmiI GTMKAC 1 cut(s) 111
XmnI GAANNNNTTC 2 cut(s) 146, 336
XspI CTAG 1 cut(s) 167
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.