Prupe.6G030300_v2.0.a1

transposition, RNA-mediated

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp06
OG0000276
Physical Location & Seq
Forward (+)
2368928 .. 2369771
844 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.6G030300.1

Sequence Viewer

Length: 345 bp
ATGAAGCAAAAGATATTAGTGAAGGTGCAAATGCACTGTGACAAATGCAGAACCAAGGCGTTGAAGATTGCAGCATCTGCATACGGTGTGAGCAAAGTGTCGATAGAAGGAGCAAACAGGGATCATGTGGAGGTGATCGGAGACGGTGTGGACTCGGTTTGCCTGACGGAGTTGCTAAGGAAGAAGCTTGGCTTCGCGGCCATAGTTAAAGTTGAACAAGTGAAAGGAGATAAAAGAGAGGAAAAGCCAACTGCAAACTATATTCAGTATTGTGCTCCGCAGTGTCCTCCAATGTACTGTGAAGTGGTTCGCGAATATCCAGAGCCAACTTGCTCTATCATGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
HMA

Protein Analysis

115

Amino Acids

12.72

Weight (kDa)

8.67

Isoelectric Point (pI)

36.48

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000276)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G05030 AT4G05030
fragaria_vesca FvH4_3g24080 FvH4_3g24080 FvH4_3g24100 FvH4_3g24100 FvH4_3g42050 FvH4_3g42060 FvH4_3g42070 FvH4_3g42071 FvH4_3g42080 FvH4_3g42090 FvH4_3g42100 FvH4_3g42110
malus_domestica MD03G1038100.v1.1 MD03G1038400.v1.1 MD03G1038600.v1.1 MD03G1038900.v1.1 MD03G1039000.v1.1 MD03G1039100.v1.1 MD03G1188500.v1.1 MD10G1233100.v1.1 MD10G1233300.v1.1 MD10G1341200.v1.1 MD11G1039200.v1.1 MD11G1039300.v1.1 MD11G1204400.v1.1 MD11G1204600.v1.1
prunus_persica Prupe.2G123900_v2.0.a1 Prupe.4G001900_v2.0.a1 Prupe.4G234700_v2.0.a1 Prupe.4G234800_v2.0.a1 Prupe.6G025900_v2.0.a1 Prupe.6G030200_v2.0.a1 Prupe.6G030300_v2.0.a1 Prupe.6G030400_v2.0.a1 Prupe.6G030600_v2.0.a1 Prupe.6G030900_v2.0.a1 Prupe.6G031000_v2.0.a1 Prupe.6G031100_v2.0.a1 Prupe.6G031100_v2.0.a1
pyrus_communis pycom03g02940 pycom03g02950 pycom03g02980 pycom03g02990 pycom03g03010 pycom11g03310 pycom11g03320
rosa_chinensis RchiOBHm_Chr3g0484311 RchiOBHm_Chr5g0000231 RchiOBHm_Chr5g0042661 RchiOBHm_Chr5g0042671 RchiOBHm_Chr5g0075281 RchiOBHm_Chr5g0075291 RchiOBHm_Chr5g0075321 RchiOBHm_Chr5g0075331
rosa_laevigata RLG00000034149 RLG00000036545 RLG00000036546 RLG00000036547 RLG00000036548 RLG00000036549 RLG00000036550
rosa_multiflora Rmu_sc0000295.1_g000011 Rmu_sc0000770.1_g000041 Rmu_sc0000770.1_g000049 Rmu_sc0002564.1_g000002 Rmu_sc0002564.1_g000003 Rmu_sc0002564.1_g000016
rosa_roxburghii Rroxscaffold_1G00006200 Rroxscaffold_1G00006210 Rroxscaffold_1G00006220 Rroxscaffold_1G00006250 Rroxscaffold_1G00006270 Rroxscaffold_1G00037900 Rroxscaffold_1G00037980 Rroxscaffold_6G00397790
rosa_rugosa Rorug03G0210600 Rorug05G0203800 Rorug05G0203900 Rorug05G0438100 Rorug05G0438200 Rorug05G0438700 Rorug05G0438900 Rorug05G0438900
rosa_samantha Rh3AG259700 Rh3AG259800 Rh3BG296300 Rh3DG289900 Rh5AG001600 Rh5AG288900 Rh5AG289000 Rh5AG289200 Rh5AG494800 Rh5AG495000 Rh5AG495200 Rh5AG495300 Rh5BG293000 Rh5BG293100 Rh5BG293300 Rh5BG516400 Rh5BG516500 Rh5BG516900 Rh5BG517000 Rh5CG001900 Rh5CG325700 Rh5CG325900 Rh5CG326000 Rh5CG540200 Rh5CG540300 Rh5CG540500 Rh5CG540600 Rh5DG001900 Rh5DG302900 Rh5DG303000 Rh5DG303200 Rh5DG529100 Rh5DG529300 Rh5DG529400 Rh5DG532500
rosa_wichuraiana Rw3G023420 Rw3G023430 Rw5G000210 Rw5G026800 Rw5G045910 Rw5G045920 Rw5G045930 Rw5G045940 Rw5G045950

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 2 cut(s) 197, 312
AciI CCGC 2 cut(s) 197, 278
AclWI GGATC 1 cut(s) 129
AcoI YGGCCR 1 cut(s) 198
AfaI GTAC 1 cut(s) 296
AgsI TTSAA 2 cut(s) 64, 215
AluBI AGCT 1 cut(s) 187
AluI AGCT 1 cut(s) 187
Alw21I GWGCWC 1 cut(s) 277
Alw26I GTCTC 1 cut(s) 135
AlwI GGATC 1 cut(s) 129
AlwNI CAGNNNCTG 1 cut(s) 77
AoxI GGCC 1 cut(s) 198
ApeKI GCWGC 1 cut(s) 71
Asp700I GAANNNNTTC 1 cut(s) 306
AsuHPI GGTGA 1 cut(s) 145
Bbv12I GWGCWC 1 cut(s) 277
BbvI GCAGC 1 cut(s) 83
BcoDI GTCTC 1 cut(s) 135
BisI GCNGC 2 cut(s) 72, 198
BlsI GCNGC 2 cut(s) 73, 199
BmsI GCATC 1 cut(s) 83
Bpu10I CCTNAGC 1 cut(s) 176
BsaJI CCNNGG 1 cut(s) 54
BsaXI ACNNNNNCTCC 2 cut(s) 132, 162
BseDI CCNNGG 1 cut(s) 54
BseXI GCAGC 1 cut(s) 83
Bsh1236I CGCG 2 cut(s) 197, 312
BshFI GGCC 1 cut(s) 200
BsiHKAI GWGCWC 1 cut(s) 277
BsmAI GTCTC 1 cut(s) 135
BsmBI CGTCTC 1 cut(s) 135
BsnI GGCC 1 cut(s) 200
Bsp1286I GDGCHC 1 cut(s) 277
Bsp143I GATC 2 cut(s) 121, 135
Bsp68I TCGCGA 1 cut(s) 312
BspACI CCGC 2 cut(s) 197, 278
BspANI GGCC 1 cut(s) 200
BspFNI CGCG 2 cut(s) 197, 312
BspPI GGATC 1 cut(s) 129
BssECI CCNNGG 1 cut(s) 54
BssMI GATC 2 cut(s) 121, 135
BssT1I CCWWGG 1 cut(s) 54
Bst4CI ACNGT 4 cut(s) 38, 86, 146, 299
BstAPI GCANNNNNTGC 1 cut(s) 77
BstDEI CTNAG 1 cut(s) 176
BstFNI CGCG 2 cut(s) 197, 312
BstKTI GATC 2 cut(s) 124, 138
BstMAI GTCTC 1 cut(s) 135
BstMBI GATC 2 cut(s) 121, 135
BstMWI GCNNNNNNNGC 1 cut(s) 77
BstUI CGCG 2 cut(s) 197, 312
BstV1I GCAGC 1 cut(s) 83
BsuRI GGCC 1 cut(s) 200
BtsI GCAGTG 1 cut(s) 287
BtsIMutI CAGTG 2 cut(s) 34, 287
BtuMI TCGCGA 1 cut(s) 312
CaiI CAGNNNCTG 1 cut(s) 77
Csp6I GTAC 1 cut(s) 295
CviAII CATG 2 cut(s) 125, 340
CviJI RGCY 5 cut(s) 187, 192, 200, 247, 325
CviKI_1 RGCY 5 cut(s) 187, 192, 200, 247, 325
CviQI GTAC 1 cut(s) 295
DdeI CTNAG 1 cut(s) 176
DpnI GATC 2 cut(s) 123, 137
DpnII GATC 2 cut(s) 121, 135
EaeI YGGCCR 1 cut(s) 198
Eco130I CCWWGG 1 cut(s) 54
EcoT14I CCWWGG 1 cut(s) 54
ErhI CCWWGG 1 cut(s) 54
Esp3I CGTCTC 1 cut(s) 135
FaeI CATG 2 cut(s) 128, 343
FaiI YATR 5 cut(s) 82, 126, 203, 261, 341
FalI AAGNNNNNCTT 2 cut(s) 176, 208
FatI CATG 2 cut(s) 124, 339
Fnu4HI GCNGC 2 cut(s) 72, 198
Fsp4HI GCNGC 2 cut(s) 72, 198
GluI GCNGC 2 cut(s) 72, 198
HaeIII GGCC 1 cut(s) 200
Hin1II CATG 2 cut(s) 128, 343
HindIII AAGCTT 1 cut(s) 185
HinfI GANTC 1 cut(s) 152
HphI GGTGA 1 cut(s) 145
Hpy166II GTNNAC 1 cut(s) 151
Hpy188I TCNGA 1 cut(s) 140
Hpy188III TCNNGA 2 cut(s) 311, 320
Hpy8I GTNNAC 1 cut(s) 151
HpyAV CCTTC 2 cut(s) 16, 101
HpyCH4III ACNGT 4 cut(s) 38, 86, 146, 299
HpyCH4V TGCA 6 cut(s) 28, 34, 48, 71, 80, 254
HpyF10VI GCNNNNNNNGC 1 cut(s) 77
HpyF3I CTNAG 1 cut(s) 176
Hsp92II CATG 2 cut(s) 128, 343
Kzo9I GATC 2 cut(s) 121, 135
LmnI GCTCC 2 cut(s) 110, 280
LpnPI CCDG 3 cut(s) 103, 176, 333
Lsp1109I GCAGC 1 cut(s) 83
LweI GCATC 1 cut(s) 83
MaeIII GTNAC 1 cut(s) 38
MalI GATC 2 cut(s) 123, 137
MboI GATC 2 cut(s) 121, 135
MboII GAAGA 2 cut(s) 76, 193
MhlI GDGCHC 1 cut(s) 277
MlyI GAGTC 1 cut(s) 146
MnlI CCTC 3 cut(s) 124, 232, 297
MroXI GAANNNNTTC 1 cut(s) 306
MseI TTAA 1 cut(s) 207
MvnI CGCG 2 cut(s) 197, 312
MwoI GCNNNNNNNGC 1 cut(s) 77
NdeII GATC 2 cut(s) 121, 135
NlaIII CATG 2 cut(s) 128, 343
NmuCI GTSAC 1 cut(s) 38
NruI TCGCGA 1 cut(s) 312
PdmI GAANNNNTTC 1 cut(s) 306
PkrI GCNGC 2 cut(s) 73, 199
PleI GAGTC 1 cut(s) 146
PpsI GAGTC 1 cut(s) 146
PstNI CAGNNNCTG 1 cut(s) 77
RruI TCGCGA 1 cut(s) 312
RsaI GTAC 1 cut(s) 296
RsaNI GTAC 1 cut(s) 295
SaqAI TTAA 1 cut(s) 207
SatI GCNGC 2 cut(s) 72, 198
Sau3AI GATC 2 cut(s) 121, 135
SchI GAGTC 1 cut(s) 146
SduI GDGCHC 1 cut(s) 277
SetI ASST 3 cut(s) 27, 135, 189
SfaNI GCATC 1 cut(s) 83
SsiI CCGC 2 cut(s) 197, 278
StyI CCWWGG 1 cut(s) 54
TaaI ACNGT 4 cut(s) 38, 86, 146, 299
TaqI TCGA 1 cut(s) 101
TatI WGTACW 1 cut(s) 294
TauI GCSGC 1 cut(s) 200
Tru1I TTAA 1 cut(s) 207
Tru9I TTAA 1 cut(s) 207
TscAI CASTG 2 cut(s) 41, 287
TseFI GTSAC 1 cut(s) 38
TseI GCWGC 1 cut(s) 71
Tsp45I GTSAC 1 cut(s) 38
TspDTI ATGAA 1 cut(s) 17
TspGWI ACGGA 1 cut(s) 182
TspRI CASTG 2 cut(s) 41, 287
XmnI GAANNNNTTC 1 cut(s) 306
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.