Prupe.6G030600_v2.0.a1

transposition, RNA-mediated

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp06
OG0000276
Physical Location & Seq
Forward (+)
2388621 .. 2389436
816 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.6G030600.1

Sequence Viewer

Length: 393 bp
ATGCCTTCATTCATAAAATTCCTAAAGTTTTGTGTTTGCGAAAAGGACATTTCATGTTCTCTCTACAATACGAAGCAAAAGATAGTGATCAAGGTGCAATTGACCTCTCAGAACTGCAGAACCAAGGCCTTGAAGATTGCTGCAGAAGCCAAAGGTGTGAGCAATGTTTCCATAGACGTAGAGAAAGCGGTAGTGGAGGTGATTGGAATTGGAGTTGATGCCGTTTCCTTGGCACAGTCATTGGAGAAGCAGCTTGGCTTTGCTTCCATTGTTAGTGTTGGAGAAGTGAAAAAACCAGAGGAGCCAAAGCCAGCCATTCCAATTGAATGGACATCAAGCTATATTCACTGTCCACGGTATGCTGTGCACTATGATGGATTCTGCCGATGTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
HMA

Protein Analysis

131

Amino Acids

14.31

Weight (kDa)

8.67

Isoelectric Point (pI)

30.81

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000276)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G05030 AT4G05030
fragaria_vesca FvH4_3g24080 FvH4_3g24080 FvH4_3g24100 FvH4_3g24100 FvH4_3g42050 FvH4_3g42060 FvH4_3g42070 FvH4_3g42071 FvH4_3g42080 FvH4_3g42090 FvH4_3g42100 FvH4_3g42110
malus_domestica MD03G1038100.v1.1 MD03G1038400.v1.1 MD03G1038600.v1.1 MD03G1038900.v1.1 MD03G1039000.v1.1 MD03G1039100.v1.1 MD03G1188500.v1.1 MD10G1233100.v1.1 MD10G1233300.v1.1 MD10G1341200.v1.1 MD11G1039200.v1.1 MD11G1039300.v1.1 MD11G1204400.v1.1 MD11G1204600.v1.1
prunus_persica Prupe.2G123900_v2.0.a1 Prupe.4G001900_v2.0.a1 Prupe.4G234700_v2.0.a1 Prupe.4G234800_v2.0.a1 Prupe.6G025900_v2.0.a1 Prupe.6G030200_v2.0.a1 Prupe.6G030300_v2.0.a1 Prupe.6G030400_v2.0.a1 Prupe.6G030600_v2.0.a1 Prupe.6G030900_v2.0.a1 Prupe.6G031000_v2.0.a1 Prupe.6G031100_v2.0.a1 Prupe.6G031100_v2.0.a1
pyrus_communis pycom03g02940 pycom03g02950 pycom03g02980 pycom03g02990 pycom03g03010 pycom11g03310 pycom11g03320
rosa_chinensis RchiOBHm_Chr3g0484311 RchiOBHm_Chr5g0000231 RchiOBHm_Chr5g0042661 RchiOBHm_Chr5g0042671 RchiOBHm_Chr5g0075281 RchiOBHm_Chr5g0075291 RchiOBHm_Chr5g0075321 RchiOBHm_Chr5g0075331
rosa_laevigata RLG00000034149 RLG00000036545 RLG00000036546 RLG00000036547 RLG00000036548 RLG00000036549 RLG00000036550
rosa_multiflora Rmu_sc0000295.1_g000011 Rmu_sc0000770.1_g000041 Rmu_sc0000770.1_g000049 Rmu_sc0002564.1_g000002 Rmu_sc0002564.1_g000003 Rmu_sc0002564.1_g000016
rosa_roxburghii Rroxscaffold_1G00006200 Rroxscaffold_1G00006210 Rroxscaffold_1G00006220 Rroxscaffold_1G00006250 Rroxscaffold_1G00006270 Rroxscaffold_1G00037900 Rroxscaffold_1G00037980 Rroxscaffold_6G00397790
rosa_rugosa Rorug03G0210600 Rorug05G0203800 Rorug05G0203900 Rorug05G0438100 Rorug05G0438200 Rorug05G0438700 Rorug05G0438900 Rorug05G0438900
rosa_samantha Rh3AG259700 Rh3AG259800 Rh3BG296300 Rh3DG289900 Rh5AG001600 Rh5AG288900 Rh5AG289000 Rh5AG289200 Rh5AG494800 Rh5AG495000 Rh5AG495200 Rh5AG495300 Rh5BG293000 Rh5BG293100 Rh5BG293300 Rh5BG516400 Rh5BG516500 Rh5BG516900 Rh5BG517000 Rh5CG001900 Rh5CG325700 Rh5CG325900 Rh5CG326000 Rh5CG540200 Rh5CG540300 Rh5CG540500 Rh5CG540600 Rh5DG001900 Rh5DG302900 Rh5DG303000 Rh5DG303200 Rh5DG529100 Rh5DG529300 Rh5DG529400 Rh5DG532500
rosa_wichuraiana Rw3G023420 Rw3G023430 Rw5G000210 Rw5G026800 Rw5G045910 Rw5G045920 Rw5G045930 Rw5G045940 Rw5G045950

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 188
AcsI RAATTY 1 cut(s) 17
AgsI TTSAA 2 cut(s) 133, 326
AluBI AGCT 2 cut(s) 253, 339
AluI AGCT 2 cut(s) 253, 339
Alw21I GWGCWC 1 cut(s) 369
Alw44I GTGCAC 1 cut(s) 365
AoxI GGCC 1 cut(s) 126
ApaLI GTGCAC 1 cut(s) 365
ApeKI GCWGC 2 cut(s) 140, 250
ApoI RAATTY 1 cut(s) 17
AsuHPI GGTGA 1 cut(s) 211
BaeGI GKGCMC 1 cut(s) 369
Bbv12I GWGCWC 1 cut(s) 369
BbvI GCAGC 2 cut(s) 127, 262
BccI CCATC 1 cut(s) 368
BceAI ACGGC 1 cut(s) 206
BclI TGATCA 1 cut(s) 87
BfmI CTRYAG 2 cut(s) 115, 141
BisI GCNGC 2 cut(s) 141, 251
BlsI GCNGC 2 cut(s) 142, 252
BmiI GGNNCC 1 cut(s) 303
BmsI GCATC 1 cut(s) 208
BsaBI GATNNNNATC 1 cut(s) 86
BsaJI CCNNGG 3 cut(s) 123, 228, 353
Bse3DI GCAATG 1 cut(s) 169
Bse8I GATNNNNATC 1 cut(s) 86
BseDI CCNNGG 3 cut(s) 123, 228, 353
BseJI GATNNNNATC 1 cut(s) 86
BseMI GCAATG 1 cut(s) 169
BseMII CTCAG 1 cut(s) 122
BseRI GAGGAG 1 cut(s) 314
BseSI GKGCMC 1 cut(s) 369
BseXI GCAGC 2 cut(s) 127, 262
BshFI GGCC 1 cut(s) 128
BsiHKAI GWGCWC 1 cut(s) 369
BsnI GGCC 1 cut(s) 128
Bsp1286I GDGCHC 1 cut(s) 369
Bsp143I GATC 1 cut(s) 87
BspACI CCGC 1 cut(s) 188
BspANI GGCC 1 cut(s) 128
BspCNI CTCAG 1 cut(s) 121
BspLI GGNNCC 1 cut(s) 303
BspMAI CTGCAG 2 cut(s) 119, 145
BsrDI GCAATG 1 cut(s) 169
BssECI CCNNGG 3 cut(s) 123, 228, 353
BssMI GATC 1 cut(s) 87
BssT1I CCWWGG 2 cut(s) 123, 228
Bst4CI ACNGT 3 cut(s) 237, 350, 357
BstC8I GCNNGC 1 cut(s) 312
BstDEI CTNAG 1 cut(s) 108
BstDSI CCRYGG 1 cut(s) 353
BstKTI GATC 1 cut(s) 90
BstMBI GATC 1 cut(s) 87
BstMWI GCNNNNNNNGC 1 cut(s) 146
BstSFI CTRYAG 2 cut(s) 115, 141
BstSLI GKGCMC 1 cut(s) 369
BstV1I GCAGC 2 cut(s) 127, 262
BstXI CCANNNNNNTGG 1 cut(s) 327
BsuRI GGCC 1 cut(s) 128
BtgI CCRYGG 1 cut(s) 353
BtsIMutI CAGTG 1 cut(s) 346
Cac8I GCNNGC 1 cut(s) 312
CviAII CATG 1 cut(s) 54
CviJI RGCY 8 cut(s) 128, 149, 253, 258, 304, 310, 314, 339
CviKI_1 RGCY 8 cut(s) 128, 149, 253, 258, 304, 310, 314, 339
DdeI CTNAG 1 cut(s) 108
DpnI GATC 1 cut(s) 89
DpnII GATC 1 cut(s) 87
Eco130I CCWWGG 2 cut(s) 123, 228
Eco147I AGGCCT 1 cut(s) 128
EcoT14I CCWWGG 2 cut(s) 123, 228
ErhI CCWWGG 2 cut(s) 123, 228
FaeI CATG 1 cut(s) 57
FaiI YATR 6 cut(s) 14, 55, 173, 342, 360, 372
FatI CATG 1 cut(s) 53
FbaI TGATCA 1 cut(s) 87
Fnu4HI GCNGC 2 cut(s) 141, 251
Fsp4HI GCNGC 2 cut(s) 141, 251
GluI GCNGC 2 cut(s) 141, 251
HaeIII GGCC 1 cut(s) 128
Hin1II CATG 1 cut(s) 57
HinfI GANTC 1 cut(s) 378
HphI GGTGA 1 cut(s) 211
Hpy166II GTNNAC 2 cut(s) 353, 367
Hpy188I TCNGA 1 cut(s) 111
Hpy8I GTNNAC 2 cut(s) 353, 367
HpyAV CCTTC 1 cut(s) 15
HpyCH4III ACNGT 3 cut(s) 237, 350, 357
HpyCH4IV ACGT 1 cut(s) 177
HpyCH4V TGCA 4 cut(s) 97, 117, 143, 367
HpyF10VI GCNNNNNNNGC 1 cut(s) 146
HpyF3I CTNAG 1 cut(s) 108
HpySE526I ACGT 1 cut(s) 177
Hsp92II CATG 1 cut(s) 57
Ksp22I TGATCA 1 cut(s) 87
Kzo9I GATC 1 cut(s) 87
LmnI GCTCC 1 cut(s) 301
LpnPI CCDG 2 cut(s) 309, 324
Lsp1109I GCAGC 2 cut(s) 127, 262
LweI GCATC 1 cut(s) 208
MaeII ACGT 1 cut(s) 177
MalI GATC 1 cut(s) 89
MboI GATC 1 cut(s) 87
MboII GAAGA 1 cut(s) 145
MfeI CAATTG 2 cut(s) 98, 321
MhlI GDGCHC 1 cut(s) 369
MluCI AATT 4 cut(s) 17, 98, 207, 321
MmeI TCCRAC 1 cut(s) 259
MnlI CCTC 3 cut(s) 115, 190, 292
MseI TTAA 1 cut(s) 391
MslI CAYNNNNRTG 1 cut(s) 372
MunI CAATTG 2 cut(s) 98, 321
MwoI GCNNNNNNNGC 1 cut(s) 146
NdeII GATC 1 cut(s) 87
NlaIII CATG 1 cut(s) 57
NlaIV GGNNCC 1 cut(s) 303
PceI AGGCCT 1 cut(s) 128
PfeI GAWTC 1 cut(s) 378
PkrI GCNGC 2 cut(s) 142, 252
PspN4I GGNNCC 1 cut(s) 303
PstI CTGCAG 2 cut(s) 119, 145
RseI CAYNNNNRTG 1 cut(s) 372
SaqAI TTAA 1 cut(s) 391
SatI GCNGC 2 cut(s) 141, 251
Sau3AI GATC 1 cut(s) 87
SduI GDGCHC 1 cut(s) 369
SetI ASST 7 cut(s) 96, 107, 157, 180, 201, 255, 341
SfaNI GCATC 1 cut(s) 208
SfcI CTRYAG 2 cut(s) 115, 141
SmiMI CAYNNNNRTG 1 cut(s) 372
Sse9I AATT 4 cut(s) 17, 98, 207, 321
SseBI AGGCCT 1 cut(s) 128
SsiI CCGC 1 cut(s) 188
StuI AGGCCT 1 cut(s) 128
StyI CCWWGG 2 cut(s) 123, 228
TaaI ACNGT 3 cut(s) 237, 350, 357
TaiI ACGT 1 cut(s) 180
TasI AATT 4 cut(s) 17, 98, 207, 321
TfiI GAWTC 1 cut(s) 378
Tru1I TTAA 1 cut(s) 391
Tru9I TTAA 1 cut(s) 391
TscAI CASTG 1 cut(s) 353
TseI GCWGC 2 cut(s) 140, 250
TspDTI ATGAA 1 cut(s) 42
TspRI CASTG 1 cut(s) 353
VneI GTGCAC 1 cut(s) 365
XapI RAATTY 1 cut(s) 17
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.