pycom11g03310

transposition, RNA-mediated

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr11
OG0000276
Physical Location & Seq
Forward (+)
2580884 .. 2581562
679 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom11g03310.2

Sequence Viewer

Length: 339 bp
ATGAAGCAAAAGATAGTCATGAAGGTGCAGCTGAACTCCGAGAAATGCAGAACCAAGGCCTTGAAGATTGCTGCGGTTGCCAAAGGTGCGAGCACGGTGTCCATAGAAGTAGAGAAAGAGCATGTGGTGGTTATCGGAGACGGAATTGATGCCGTTGACTTGGCTAAATCATTGAAGAAGAAGCTTGGCTCTGTCACCATAGTAAGTGTCGAAGAAGTGAAAAAACCGGAAGAAAAACCAGCTGAGCAGCCTGAGCCAATTCAGTGGGCATCAAGCTATATTCACTATCCACAGTATCCAGCTGTGCAGTACTACTACGATGGATCCTACAGATGGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
HMA

Protein Analysis

113

Amino Acids

12.57

Weight (kDa)

8.89

Isoelectric Point (pI)

38.37

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000276)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G05030 AT4G05030
fragaria_vesca FvH4_3g24080 FvH4_3g24080 FvH4_3g24100 FvH4_3g24100 FvH4_3g42050 FvH4_3g42060 FvH4_3g42070 FvH4_3g42071 FvH4_3g42080 FvH4_3g42090 FvH4_3g42100 FvH4_3g42110
malus_domestica MD03G1038100.v1.1 MD03G1038400.v1.1 MD03G1038600.v1.1 MD03G1038900.v1.1 MD03G1039000.v1.1 MD03G1039100.v1.1 MD03G1188500.v1.1 MD10G1233100.v1.1 MD10G1233300.v1.1 MD10G1341200.v1.1 MD11G1039200.v1.1 MD11G1039300.v1.1 MD11G1204400.v1.1 MD11G1204600.v1.1
prunus_persica Prupe.2G123900_v2.0.a1 Prupe.4G001900_v2.0.a1 Prupe.4G234700_v2.0.a1 Prupe.4G234800_v2.0.a1 Prupe.6G025900_v2.0.a1 Prupe.6G030200_v2.0.a1 Prupe.6G030300_v2.0.a1 Prupe.6G030400_v2.0.a1 Prupe.6G030600_v2.0.a1 Prupe.6G030900_v2.0.a1 Prupe.6G031000_v2.0.a1 Prupe.6G031100_v2.0.a1 Prupe.6G031100_v2.0.a1
pyrus_communis pycom03g02940 pycom03g02950 pycom03g02980 pycom03g02990 pycom03g03010 pycom11g03310 pycom11g03320
rosa_chinensis RchiOBHm_Chr3g0484311 RchiOBHm_Chr5g0000231 RchiOBHm_Chr5g0042661 RchiOBHm_Chr5g0042671 RchiOBHm_Chr5g0075281 RchiOBHm_Chr5g0075291 RchiOBHm_Chr5g0075321 RchiOBHm_Chr5g0075331
rosa_laevigata RLG00000034149 RLG00000036545 RLG00000036546 RLG00000036547 RLG00000036548 RLG00000036549 RLG00000036550
rosa_multiflora Rmu_sc0000295.1_g000011 Rmu_sc0000770.1_g000041 Rmu_sc0000770.1_g000049 Rmu_sc0002564.1_g000002 Rmu_sc0002564.1_g000003 Rmu_sc0002564.1_g000016
rosa_roxburghii Rroxscaffold_1G00006200 Rroxscaffold_1G00006210 Rroxscaffold_1G00006220 Rroxscaffold_1G00006250 Rroxscaffold_1G00006270 Rroxscaffold_1G00037900 Rroxscaffold_1G00037980 Rroxscaffold_6G00397790
rosa_rugosa Rorug03G0210600 Rorug05G0203800 Rorug05G0203900 Rorug05G0438100 Rorug05G0438200 Rorug05G0438700 Rorug05G0438900 Rorug05G0438900
rosa_samantha Rh3AG259700 Rh3AG259800 Rh3BG296300 Rh3DG289900 Rh5AG001600 Rh5AG288900 Rh5AG289000 Rh5AG289200 Rh5AG494800 Rh5AG495000 Rh5AG495200 Rh5AG495300 Rh5BG293000 Rh5BG293100 Rh5BG293300 Rh5BG516400 Rh5BG516500 Rh5BG516900 Rh5BG517000 Rh5CG001900 Rh5CG325700 Rh5CG325900 Rh5CG326000 Rh5CG540200 Rh5CG540300 Rh5CG540500 Rh5CG540600 Rh5DG001900 Rh5DG302900 Rh5DG303000 Rh5DG303200 Rh5DG529100 Rh5DG529300 Rh5DG529400 Rh5DG532500
rosa_wichuraiana Rw3G023420 Rw3G023430 Rw5G000210 Rw5G026800 Rw5G045910 Rw5G045920 Rw5G045930 Rw5G045940 Rw5G045950

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 74
AclWI GGATC 2 cut(s) 318, 331
AfaI GTAC 1 cut(s) 311
AfiI CCNNNNNNNGG 1 cut(s) 333
AgsI TTSAA 2 cut(s) 64, 175
AluBI AGCT 5 cut(s) 31, 184, 242, 276, 302
AluI AGCT 5 cut(s) 31, 184, 242, 276, 302
Alw21I GWGCWC 1 cut(s) 95
Alw26I GTCTC 1 cut(s) 132
AlwI GGATC 2 cut(s) 318, 331
AoxI GGCC 1 cut(s) 57
ApeKI GCWGC 3 cut(s) 28, 71, 247
AsuHPI GGTGA 1 cut(s) 187
BamHI GGATCC 1 cut(s) 323
Bbv12I GWGCWC 1 cut(s) 95
BbvI GCAGC 3 cut(s) 40, 58, 259
BccI CCATC 2 cut(s) 314, 327
BceAI ACGGC 1 cut(s) 137
BciVI GTATCC 1 cut(s) 306
BcoDI GTCTC 1 cut(s) 132
BfmI CTRYAG 1 cut(s) 328
BfuI GTATCC 1 cut(s) 306
BisI GCNGC 3 cut(s) 29, 72, 248
BlpI GCTNAGC 1 cut(s) 243
BlsI GCNGC 3 cut(s) 30, 73, 249
BmcAI AGTACT 1 cut(s) 311
BmiI GGNNCC 1 cut(s) 325
BmsI GCATC 2 cut(s) 139, 278
Bpu10I CCTNAGC 1 cut(s) 252
Bpu1102I GCTNAGC 1 cut(s) 243
BsaJI CCNNGG 1 cut(s) 54
BsaWI WCCGGW 1 cut(s) 226
Bsc4I CCNNNNNNNGG 1 cut(s) 333
BseDI CCNNGG 1 cut(s) 54
BseLI CCNNNNNNNGG 1 cut(s) 333
BseMII CTCAG 2 cut(s) 234, 243
BseXI GCAGC 3 cut(s) 40, 58, 259
BsgI GTGCAG 2 cut(s) 47, 326
BshFI GGCC 1 cut(s) 59
BsiHKAI GWGCWC 1 cut(s) 95
BsiSI CCGG 1 cut(s) 227
BslI CCNNNNNNNGG 1 cut(s) 333
BsmAI GTCTC 1 cut(s) 132
BsmBI CGTCTC 1 cut(s) 132
BsnI GGCC 1 cut(s) 59
Bsp1286I GDGCHC 1 cut(s) 95
Bsp143I GATC 1 cut(s) 323
Bsp1720I GCTNAGC 1 cut(s) 243
BspACI CCGC 1 cut(s) 74
BspANI GGCC 1 cut(s) 59
BspCNI CTCAG 2 cut(s) 235, 244
BspHI TCATGA 1 cut(s) 18
BspLI GGNNCC 1 cut(s) 325
BspPI GGATC 2 cut(s) 318, 331
BssECI CCNNGG 1 cut(s) 54
BssMI GATC 1 cut(s) 323
BssT1I CCWWGG 1 cut(s) 54
Bst4CI ACNGT 2 cut(s) 97, 294
BstC8I GCNNGC 1 cut(s) 91
BstDEI CTNAG 2 cut(s) 243, 252
BstKTI GATC 1 cut(s) 326
BstMAI GTCTC 1 cut(s) 132
BstMBI GATC 1 cut(s) 323
BstMWI GCNNNNNNNGC 3 cut(s) 77, 86, 253
BstNSI RCATGY 1 cut(s) 125
BstSFI CTRYAG 1 cut(s) 328
BstV1I GCAGC 3 cut(s) 40, 58, 259
BstX2I RGATCY 1 cut(s) 323
BstXI CCANNNNNNTGG 1 cut(s) 264
BstYI RGATCY 1 cut(s) 323
BsuI GTATCC 1 cut(s) 306
BsuRI GGCC 1 cut(s) 59
BtsIMutI CAGTG 1 cut(s) 269
Cac8I GCNNGC 1 cut(s) 91
CciI TCATGA 1 cut(s) 18
Csp6I GTAC 1 cut(s) 310
CviAII CATG 2 cut(s) 19, 122
CviQI GTAC 1 cut(s) 310
DdeI CTNAG 2 cut(s) 243, 252
DpnI GATC 1 cut(s) 325
DpnII GATC 1 cut(s) 323
Eco130I CCWWGG 1 cut(s) 54
Eco147I AGGCCT 1 cut(s) 59
EcoT14I CCWWGG 1 cut(s) 54
ErhI CCWWGG 1 cut(s) 54
Esp3I CGTCTC 1 cut(s) 132
FaeI CATG 2 cut(s) 22, 125
FaiI YATR 5 cut(s) 20, 104, 123, 200, 279
FatI CATG 2 cut(s) 18, 121
Fnu4HI GCNGC 3 cut(s) 29, 72, 248
Fsp4HI GCNGC 3 cut(s) 29, 72, 248
GluI GCNGC 3 cut(s) 29, 72, 248
HaeIII GGCC 1 cut(s) 59
HapII CCGG 1 cut(s) 227
Hin1II CATG 2 cut(s) 22, 125
HincII GTYRAC 1 cut(s) 157
HindII GTYRAC 1 cut(s) 157
HindIII AAGCTT 1 cut(s) 182
HpaII CCGG 1 cut(s) 227
HphI GGTGA 1 cut(s) 187
Hpy166II GTNNAC 1 cut(s) 157
Hpy188I TCNGA 2 cut(s) 40, 137
Hpy188III TCNNGA 1 cut(s) 19
Hpy8I GTNNAC 1 cut(s) 157
HpyAV CCTTC 1 cut(s) 16
HpyCH4III ACNGT 2 cut(s) 97, 294
HpyCH4V TGCA 3 cut(s) 28, 48, 307
HpyF10VI GCNNNNNNNGC 3 cut(s) 77, 86, 253
HpyF3I CTNAG 2 cut(s) 243, 252
Hsp92II CATG 2 cut(s) 22, 125
Kzo9I GATC 1 cut(s) 323
LpnPI CCDG 4 cut(s) 240, 252, 264, 312
Lsp1109I GCAGC 3 cut(s) 40, 58, 259
LweI GCATC 2 cut(s) 139, 278
MaeIII GTNAC 1 cut(s) 193
MalI GATC 1 cut(s) 325
MboI GATC 1 cut(s) 323
MboII GAAGA 5 cut(s) 76, 187, 190, 224, 242
MflI RGATCY 1 cut(s) 323
MhlI GDGCHC 1 cut(s) 95
MluCI AATT 2 cut(s) 144, 258
MslI CAYNNNNRTG 1 cut(s) 23
MspA1I CMGCKG 3 cut(s) 31, 242, 302
MspI CCGG 1 cut(s) 227
MwoI GCNNNNNNNGC 3 cut(s) 77, 86, 253
NdeII GATC 1 cut(s) 323
NlaIII CATG 2 cut(s) 22, 125
NlaIV GGNNCC 1 cut(s) 325
NmuCI GTSAC 1 cut(s) 193
NspI RCATGY 1 cut(s) 125
PagI TCATGA 1 cut(s) 18
PceI AGGCCT 1 cut(s) 59
PkrI GCNGC 3 cut(s) 30, 73, 249
PspN4I GGNNCC 1 cut(s) 325
PsuI RGATCY 1 cut(s) 323
PvuII CAGCTG 3 cut(s) 31, 242, 302
RsaI GTAC 1 cut(s) 311
RsaNI GTAC 1 cut(s) 310
RseI CAYNNNNRTG 1 cut(s) 23
SatI GCNGC 3 cut(s) 29, 72, 248
Sau3AI GATC 1 cut(s) 323
ScaI AGTACT 1 cut(s) 311
SduI GDGCHC 1 cut(s) 95
SetI ASST 7 cut(s) 27, 33, 88, 186, 244, 278, 304
SfaNI GCATC 2 cut(s) 139, 278
SfcI CTRYAG 1 cut(s) 328
SmiMI CAYNNNNRTG 1 cut(s) 23
Sse9I AATT 2 cut(s) 144, 258
SseBI AGGCCT 1 cut(s) 59
SsiI CCGC 1 cut(s) 74
StuI AGGCCT 1 cut(s) 59
StyI CCWWGG 1 cut(s) 54
TaaI ACNGT 2 cut(s) 97, 294
TaqI TCGA 1 cut(s) 210
TasI AATT 2 cut(s) 144, 258
TatI WGTACW 1 cut(s) 309
TscAI CASTG 1 cut(s) 269
TseFI GTSAC 1 cut(s) 193
TseI GCWGC 3 cut(s) 28, 71, 247
Tsp45I GTSAC 1 cut(s) 193
TspDTI ATGAA 2 cut(s) 17, 35
TspGWI ACGGA 1 cut(s) 156
TspRI CASTG 1 cut(s) 269
XceI RCATGY 1 cut(s) 125
ZrmI AGTACT 1 cut(s) 311
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.