Rorug05G0438100

transposition, RNA-mediated

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000005
OG0000276
Physical Location & Seq
Reverse (-)
60893854 .. 60896124
2271 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug05G0438100.1

Sequence Viewer

Length: 2271 bp
ATGGTCATGAACAATGTCACTTCCGTAAGCTATTCTTTATTGGTACGAGGAGAGCCAACTCCACATATATTACCTACCAGAGGAATCCGACAAGGTGATCCACTATCACCTTACTTGTTTATTCTCTGTGCAGAAGGTCTGTCGGCCCTCATCACAAATGCTATGCAACGTAATTTGATTCAGGGAATGAAGATGTGTCCACAAGCTCCCACCCTTCATCATCTATTTTTTGCAGATGATTCTTTGCTTTTTGGAACAGCCACTACCGCAGAATGTCTTGCATTTAAACACATCCTCAATGTTTATGAGCAAGCTTCAGGCCAAAAAGTAAATTTCCAAAAGAGCAGTATGGTCTTTAGCAAGAATGTGAATATGGATCTCCAAGATACTCTGGCATCCATCCTTGAGGTAGAAAGGAAAGAAGAACATGATAAATACCTTGGCTTACCATTGAGAGTAGGGAAGTCCAAGATAGCAAAATTTGCCTACATCAAAGAACGATTATCCAAGAAGCTAATCAGCTGGAAGTCCAAAATCCTGAGTTGTGCAGGTAAGGAAATTCTCATCAAGGCCGTAGCTCAAACAATGCCTCTTTACGTCATGAACTGTTATCTGCTACCAAAAAGCCTCTGTGATGACATCCACCAACTATGTGCTTCATTCTTTTGGGGTGACACTGATGAGAAGAAGAAAATTCATTGGAGAAGTTGGGAGAGGCTTTGCTTAACCAAACAAGAAGGAGGTATGGGTTTCAAAAACACTTATGCTTACAATATAGCTATGTTTGATAAGCAAGAATGGAGAATTATCTCCAATCCGCAATCTTTGGTCGCTAGGTTATATAAGGATCTATATTTTCCACATTGCTCTTTTTGGGAAGCTGCTGTAGGAGATTCTCCTTCTTTCTCTTGGAGAAACATCTTACAAGGCAGAGCTGTACTTCATGCTGGTATACAATGGAAAATTGGAGATGGGGAGCAAGTTGATATTTGGACTGATCCGTGGATCCTTGTACAACCCTCGTATGGACCTGTTAGACCTCAACATAACTCTTTGCACAAGGTGGCAGACCTAATTGATGACACATCTAGACAATGGAAAGCTGAGTTAGTTCATAGTATATTCCCCAATGACATTGCCTCAAAAATTCTTTGCATTCCTCTTGGTCGTAATCCATGCCCGGACTGGTTAGTTTGGAGTCCGGAAAAAAGGGGATATTACTCCGTTAAGTCTGCTTATTGGATTGCAAGAGTGGATGTTATGCAAAACACTCTCACTTCTACATCCAGTGGGGATCCATACAAAGATCTTTGGAAGAACCTATGGAAAGCTAAAGTGCCCGGCAAGGTAAGCATTTGTGTTTGGAGAGCTTGTAATAATTTGCTCCCCACAAGAGAAAGGCTACTTACTAAAGGGTATGATGGAGACACCAACTGTTTACTCTGCGATCATCGAGTGGAAGATGTGGTACACCTTTTCTGCAAATGTACAGTGGCAACAACTATACTCTCAGCAGCTCTTTTTAATCTGCAGGGCACTATTTTACCATCTCTCAATTTCAAAGAATGGATGTTAGAAAGAGCCTTAACATTGAGTGCTCCAAACTTTGCACGATTAATGATGATAATTTGGGCTGTTTGGAAAAACCGAAATAACATGCTATGGTCAGGCACACAGCAAACTGCTCAAGATGTGTTACTAAGCAGCTTCTCATGGCTCGATGAGTTCCAGACAGCTCGAGGTGGAGTCAAACAACTGAAAGCCCATCTGCGGCCTAGATGGAAACCTGCTGAGAATGGAGCGTTTAAACTGAACGTTGATGCAGCATTCTTATCCACAACAACCAAGGGAGGCATTGGAGGAATTTTAAGGGATGCATCAGGAAGATTTGTAGCGGCATTTGCTAGTCCAGTGGCATATGCAGCGTCTCCAAAACAATGTGAGCTTAGGGCAATTCGAGCAGGACTTGATTTACTTGTTTCTCTTCACATACAGCATGTGGTTGTAGAAAGTGATAATACCATGGCCATCGCTGAGGCTCTATGCACTGACCACACTCTTTTGGCTAATGGGGGCTTAATTGATGACATACAGAGTGCCATGCAGAAAATTCCAAATGTTCAAATATGTCATCAACGACGAACCAGCAATATGGTAGCACATCGACTTGCTGGAATAGGCTTTGAAGCAACTAATGGTTGTATATGGATAGGTCTAGCACCTGCTTGTATTCGTGATGTACTCCATCACGATTCTCAGTACCTCCATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
HMA

Protein Analysis

756

Amino Acids

85.13

Weight (kDa)

8.92

Isoelectric Point (pI)

37.28

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
RVT_1 PF00078 21 - 150 2.2e-08 Reverse transcriptase (RNA-dependent DNA polymerase)
zf-RVT PF13966 407 - 501 4.8e-17 zinc-binding in reverse transcriptase
RVT_3 PF13456 605 - 724 2.3e-21 Reverse transcriptase-like
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000276)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G05030 AT4G05030
fragaria_vesca FvH4_3g24080 FvH4_3g24080 FvH4_3g24100 FvH4_3g24100 FvH4_3g42050 FvH4_3g42060 FvH4_3g42070 FvH4_3g42071 FvH4_3g42080 FvH4_3g42090 FvH4_3g42100 FvH4_3g42110
malus_domestica MD03G1038100.v1.1 MD03G1038400.v1.1 MD03G1038600.v1.1 MD03G1038900.v1.1 MD03G1039000.v1.1 MD03G1039100.v1.1 MD03G1188500.v1.1 MD10G1233100.v1.1 MD10G1233300.v1.1 MD10G1341200.v1.1 MD11G1039200.v1.1 MD11G1039300.v1.1 MD11G1204400.v1.1 MD11G1204600.v1.1
prunus_persica Prupe.2G123900_v2.0.a1 Prupe.4G001900_v2.0.a1 Prupe.4G234700_v2.0.a1 Prupe.4G234800_v2.0.a1 Prupe.6G025900_v2.0.a1 Prupe.6G030200_v2.0.a1 Prupe.6G030300_v2.0.a1 Prupe.6G030400_v2.0.a1 Prupe.6G030600_v2.0.a1 Prupe.6G030900_v2.0.a1 Prupe.6G031000_v2.0.a1 Prupe.6G031100_v2.0.a1 Prupe.6G031100_v2.0.a1
pyrus_communis pycom03g02940 pycom03g02950 pycom03g02980 pycom03g02990 pycom03g03010 pycom11g03310 pycom11g03320
rosa_chinensis RchiOBHm_Chr3g0484311 RchiOBHm_Chr5g0000231 RchiOBHm_Chr5g0042661 RchiOBHm_Chr5g0042671 RchiOBHm_Chr5g0075281 RchiOBHm_Chr5g0075291 RchiOBHm_Chr5g0075321 RchiOBHm_Chr5g0075331
rosa_laevigata RLG00000034149 RLG00000036545 RLG00000036546 RLG00000036547 RLG00000036548 RLG00000036549 RLG00000036550
rosa_multiflora Rmu_sc0000295.1_g000011 Rmu_sc0000770.1_g000041 Rmu_sc0000770.1_g000049 Rmu_sc0002564.1_g000002 Rmu_sc0002564.1_g000003 Rmu_sc0002564.1_g000016
rosa_roxburghii Rroxscaffold_1G00006200 Rroxscaffold_1G00006210 Rroxscaffold_1G00006220 Rroxscaffold_1G00006250 Rroxscaffold_1G00006270 Rroxscaffold_1G00037900 Rroxscaffold_1G00037980 Rroxscaffold_6G00397790
rosa_rugosa Rorug03G0210600 Rorug05G0203800 Rorug05G0203900 Rorug05G0438100 Rorug05G0438200 Rorug05G0438700 Rorug05G0438900 Rorug05G0438900
rosa_samantha Rh3AG259700 Rh3AG259800 Rh3BG296300 Rh3DG289900 Rh5AG001600 Rh5AG288900 Rh5AG289000 Rh5AG289200 Rh5AG494800 Rh5AG495000 Rh5AG495200 Rh5AG495300 Rh5BG293000 Rh5BG293100 Rh5BG293300 Rh5BG516400 Rh5BG516500 Rh5BG516900 Rh5BG517000 Rh5CG001900 Rh5CG325700 Rh5CG325900 Rh5CG326000 Rh5CG540200 Rh5CG540300 Rh5CG540500 Rh5CG540600 Rh5DG001900 Rh5DG302900 Rh5DG303000 Rh5DG303200 Rh5DG529100 Rh5DG529300 Rh5DG529400 Rh5DG532500
rosa_wichuraiana Rw3G023420 Rw3G023430 Rw5G000210 Rw5G026800 Rw5G045910 Rw5G045920 Rw5G045930 Rw5G045940 Rw5G045950

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 2230
Acc36I ACCTGC 3 cut(s) 539, 1795, 2230
AccI GTMKAC 1 cut(s) 952
AccIII TCCGGA 1 cut(s) 1201
AciI CCGC 4 cut(s) 267, 818, 1771, 1895
AclI AACGTT 1 cut(s) 1815
AclWI GGATC 8 cut(s) 92, 384, 855, 992, 1000, 1013, 1289, 1302
AcoI YGGCCR 1 cut(s) 2025
AcsI RAATTY 7 cut(s) 331, 479, 558, 693, 1146, 1863, 2109
AcuI CTGAAG 1 cut(s) 300
AdeI CACNNNGTG 1 cut(s) 1063
AfaI GTAC 7 cut(s) 45, 939, 1014, 1470, 1489, 2241, 2261
AfiI CCNNNNNNNGG 3 cut(s) 80, 1025, 1770
AgsI TTSAA 4 cut(s) 754, 1561, 2123, 2186
Alw21I GWGCWC 1 cut(s) 1600
Alw26I GTCTC 2 cut(s) 1419, 1932
AlwI GGATC 8 cut(s) 92, 384, 855, 992, 1000, 1013, 1289, 1302
Ama87I CYCGRG 1 cut(s) 1737
Aor13HI TCCGGA 1 cut(s) 1201
AoxI GGCC 5 cut(s) 144, 319, 570, 1772, 2025
ApeKI GCWGC 5 cut(s) 881, 1514, 1704, 1823, 1922
ApoI RAATTY 7 cut(s) 331, 479, 558, 693, 1146, 1863, 2109
AseI ATTAAT 1 cut(s) 1616
AspS9I GGNCC 2 cut(s) 145, 1028
AsuC2I CCSGG 2 cut(s) 1181, 1341
AsuHPI GGTGA 3 cut(s) 99, 107, 683
AvaI CYCGRG 1 cut(s) 1737
AvaII GGWCC 1 cut(s) 1028
BaeGI GKGCMC 2 cut(s) 1341, 1538
BalI TGGCCA 1 cut(s) 2027
BamHI GGATCC 2 cut(s) 1005, 1294
BarI GAAGNNNNNNTAC 2 cut(s) 1452, 1484
Bbv12I GWGCWC 1 cut(s) 1600
BbvCI CCTCAGC 1 cut(s) 2034
BbvI GCAGC 5 cut(s) 868, 1526, 1716, 1835, 1934
BccI CCATC 8 cut(s) 407, 965, 1415, 1555, 1773, 1773, 2036, 2253
BceAI ACGGC 1 cut(s) 557
BcnI CCSGG 2 cut(s) 1181, 1341
BcoDI GTCTC 2 cut(s) 1419, 1932
BfaI CTAG 5 cut(s) 834, 1089, 1776, 1905, 2216
BfmI CTRYAG 2 cut(s) 885, 1529
BfuAI ACCTGC 3 cut(s) 539, 1795, 2230
BglII AGATCT 1 cut(s) 1306
BisI GCNGC 7 cut(s) 882, 1515, 1705, 1772, 1824, 1896, 1923
BlsI GCNGC 7 cut(s) 883, 1516, 1706, 1773, 1825, 1897, 1924
Bme1390I CCNGG 2 cut(s) 1181, 1341
Bme18I GGWCC 1 cut(s) 1028
BmeT110I CYCGRG 1 cut(s) 1737
BmgT120I GGNCC 2 cut(s) 145, 1028
BmiI GGNNCC 2 cut(s) 1007, 1296
BmrFI CCNGG 2 cut(s) 1181, 1341
BmsI GCATC 4 cut(s) 404, 1810, 1864, 1886
Bpu10I CCTNAGC 2 cut(s) 1946, 2034
BpuEI CTTGAG 2 cut(s) 425, 1671
BpuMI CCSGG 2 cut(s) 1181, 1341
BsaJI CCNNGG 4 cut(s) 439, 1001, 1845, 2022
BsaWI WCCGGW 1 cut(s) 1201
BsaXI ACNNNNNCTCC 2 cut(s) 1357, 1387
Bsc4I CCNNNNNNNGG 3 cut(s) 80, 1025, 1770
Bse1I ACTGG 3 cut(s) 1190, 1287, 1910
Bse3DI GCAATG 2 cut(s) 862, 1134
BseAI TCCGGA 1 cut(s) 1201
BseDI CCNNGG 4 cut(s) 439, 1001, 1845, 2022
BseGI GGATG 8 cut(s) 291, 395, 399, 639, 1261, 1283, 1575, 1879
BseLI CCNNNNNNNGG 3 cut(s) 80, 1025, 1770
BseMI GCAATG 2 cut(s) 862, 1134
BseMII CTCAG 6 cut(s) 530, 1095, 1524, 1782, 2025, 2270
BseNI ACTGG 3 cut(s) 1190, 1287, 1910
BseRI GAGGAG 1 cut(s) 63
BseSI GKGCMC 2 cut(s) 1341, 1538
BseXI GCAGC 5 cut(s) 868, 1526, 1716, 1835, 1934
BsgI GTGCAG 2 cut(s) 150, 567
BshFI GGCC 5 cut(s) 146, 321, 572, 1774, 2027
BsiHKAI GWGCWC 1 cut(s) 1600
BsiHKCI CYCGRG 1 cut(s) 1737
BsiSI CCGG 3 cut(s) 1181, 1202, 1341
BslI CCNNNNNNNGG 3 cut(s) 80, 1025, 1770
BsmAI GTCTC 2 cut(s) 1419, 1932
BsmBI CGTCTC 1 cut(s) 1932
BsmI GAATGC 2 cut(s) 1155, 1826
BsnI GGCC 5 cut(s) 146, 321, 572, 1774, 2027
BsoBI CYCGRG 1 cut(s) 1737
Bsp1286I GDGCHC 3 cut(s) 1341, 1538, 1600
Bsp13I TCCGGA 1 cut(s) 1201
Bsp1407I TGTACA 2 cut(s) 1012, 1487
Bsp143I GATC 8 cut(s) 97, 376, 847, 997, 1005, 1294, 1306, 1447
Bsp19I CCATGG 1 cut(s) 2022
BspACI CCGC 4 cut(s) 267, 818, 1771, 1895
BspANI GGCC 5 cut(s) 146, 321, 572, 1774, 2027
BspCNI CTCAG 6 cut(s) 531, 1096, 1523, 1783, 2026, 2269
BspEI TCCGGA 1 cut(s) 1201
BspHI TCATGA 2 cut(s) 6, 600
BspLI GGNNCC 2 cut(s) 1007, 1296
BspMAI CTGCAG 1 cut(s) 1533
BspMI ACCTGC 3 cut(s) 539, 1795, 2230
BspPI GGATC 8 cut(s) 92, 384, 855, 992, 1000, 1013, 1289, 1302
BsrDI GCAATG 2 cut(s) 862, 1134
BsrGI TGTACA 2 cut(s) 1012, 1487
BsrI ACTGG 3 cut(s) 1190, 1287, 1910
BssECI CCNNGG 4 cut(s) 439, 1001, 1845, 2022
BssMI GATC 8 cut(s) 97, 376, 847, 997, 1005, 1294, 1306, 1447
BssNAI GTATAC 1 cut(s) 953
BssT1I CCWWGG 3 cut(s) 439, 1845, 2022
Bst1107I GTATAC 1 cut(s) 953
Bst4CI ACNGT 3 cut(s) 608, 1436, 1492
Bst6I CTCTTC 1 cut(s) 1989
BstAPI GCANNNNNTGC 1 cut(s) 482
BstAUI TGTACA 2 cut(s) 1012, 1487
BstC8I GCNNGC 1 cut(s) 312
BstDEI CTNAG 8 cut(s) 539, 1104, 1510, 1700, 1791, 1946, 2034, 2256
BstDSI CCRYGG 2 cut(s) 1001, 2022
BstENI CCTNNNNNAGG 1 cut(s) 78
BstF5I GGATG 8 cut(s) 291, 395, 399, 639, 1261, 1283, 1575, 1879
BstKTI GATC 8 cut(s) 100, 379, 850, 1000, 1008, 1297, 1309, 1450
BstMAI GTCTC 2 cut(s) 1419, 1932
BstMBI GATC 8 cut(s) 97, 376, 847, 997, 1005, 1294, 1306, 1447
BstMWI GCNNNNNNNGC 6 cut(s) 266, 482, 1350, 1901, 1922, 1958
BstNSI RCATGY 2 cut(s) 1660, 2000
BstSCI CCNGG 2 cut(s) 1179, 1339
BstSFI CTRYAG 2 cut(s) 885, 1529
BstSLI GKGCMC 2 cut(s) 1341, 1538
BstV1I GCAGC 5 cut(s) 868, 1526, 1716, 1835, 1934
BstX2I RGATCY 5 cut(s) 376, 847, 1005, 1294, 1306
BstXI CCANNNNNNTGG 1 cut(s) 2152
BstYI RGATCY 5 cut(s) 376, 847, 1005, 1294, 1306
BstZ17I GTATAC 1 cut(s) 953
BsuRI GGCC 5 cut(s) 146, 321, 572, 1774, 2027
BtgI CCRYGG 2 cut(s) 1001, 2022
BtgZI GCGATG 1 cut(s) 2014
BtsCI GGATG 8 cut(s) 291, 395, 399, 639, 1261, 1283, 1575, 1879
BtsIMutI CAGTG 5 cut(s) 675, 1294, 1497, 1917, 2046
BveI ACCTGC 3 cut(s) 539, 1795, 2230
Cac8I GCNNGC 1 cut(s) 312
CciI TCATGA 2 cut(s) 6, 600
Cfr13I GGNCC 2 cut(s) 145, 1028
CseI GACGC 1 cut(s) 1914
Csp6I GTAC 7 cut(s) 44, 938, 1013, 1469, 1488, 2240, 2260
CviQI GTAC 7 cut(s) 44, 938, 1013, 1469, 1488, 2240, 2260
DdeI CTNAG 8 cut(s) 539, 1104, 1510, 1700, 1791, 1946, 2034, 2256
DpnI GATC 8 cut(s) 99, 378, 849, 999, 1007, 1296, 1308, 1449
DpnII GATC 8 cut(s) 97, 376, 847, 997, 1005, 1294, 1306, 1447
DraI TTTAAA 2 cut(s) 286, 1807
DraIII CACNNNGTG 1 cut(s) 1063
EaeI YGGCCR 1 cut(s) 2025
Eam1104I CTCTTC 1 cut(s) 1989
EarI CTCTTC 1 cut(s) 1989
Eco130I CCWWGG 3 cut(s) 439, 1845, 2022
Eco47I GGWCC 1 cut(s) 1028
Eco57I CTGAAG 1 cut(s) 300
Eco88I CYCGRG 1 cut(s) 1737
EcoNI CCTNNNNNAGG 1 cut(s) 78
EcoT14I CCWWGG 3 cut(s) 439, 1845, 2022
EcoT22I ATGCAT 1 cut(s) 1879
ErhI CCWWGG 3 cut(s) 439, 1845, 2022
Esp3I CGTCTC 1 cut(s) 1932
FalI AAGNNNNNCTT 2 cut(s) 19, 51
FauNDI CATATG 1 cut(s) 1918
FblI GTMKAC 1 cut(s) 952
Fnu4HI GCNGC 7 cut(s) 882, 1515, 1705, 1772, 1824, 1896, 1923
FokI GGATG 8 cut(s) 278, 382, 386, 626, 1268, 1270, 1582, 1886
Fsp4HI GCNGC 7 cut(s) 882, 1515, 1705, 1772, 1824, 1896, 1923
FspBI CTAG 5 cut(s) 834, 1089, 1776, 1905, 2216
GluI GCNGC 7 cut(s) 882, 1515, 1705, 1772, 1824, 1896, 1923
HaeIII GGCC 5 cut(s) 146, 321, 572, 1774, 2027
HapII CCGG 3 cut(s) 1181, 1202, 1341
HgaI GACGC 1 cut(s) 1914
HindIII AAGCTT 1 cut(s) 312
HinfI GANTC 7 cut(s) 84, 178, 239, 893, 1198, 1746, 2252
HpaII CCGG 3 cut(s) 1181, 1202, 1341
HphI GGTGA 3 cut(s) 99, 107, 683
Hpy166II GTNNAC 4 cut(s) 200, 953, 1439, 1471
Hpy188I TCNGA 1 cut(s) 89
Hpy8I GTNNAC 4 cut(s) 200, 953, 1439, 1471
Hpy99I CGWCG 1 cut(s) 2142
HpyAV CCTTC 4 cut(s) 128, 224, 731, 909
HpyCH4III ACNGT 3 cut(s) 608, 1436, 1492
HpyCH4IV ACGT 3 cut(s) 169, 597, 1815
HpyF10VI GCNNNNNNNGC 6 cut(s) 266, 482, 1350, 1901, 1922, 1958
HpyF3I CTNAG 8 cut(s) 539, 1104, 1510, 1700, 1791, 1946, 2034, 2256
HpySE526I ACGT 3 cut(s) 169, 597, 1815
Kpn2I TCCGGA 1 cut(s) 1201
Kzo9I GATC 8 cut(s) 97, 376, 847, 997, 1005, 1294, 1306, 1447
LmnI GCTCC 5 cut(s) 211, 976, 1389, 1603, 1799
Lsp1109I GCAGC 5 cut(s) 868, 1526, 1716, 1835, 1934
LweI GCATC 4 cut(s) 404, 1810, 1864, 1886
MaeI CTAG 5 cut(s) 834, 1089, 1776, 1905, 2216
MaeII ACGT 3 cut(s) 169, 597, 1815
MaeIII GTNAC 3 cut(s) 16, 671, 1695
MalI GATC 8 cut(s) 99, 378, 849, 999, 1007, 1296, 1308, 1449
MboI GATC 8 cut(s) 97, 376, 847, 997, 1005, 1294, 1306, 1447
MboII GAAGA 8 cut(s) 202, 434, 697, 700, 1327, 1472, 1896, 1976
MflI RGATCY 5 cut(s) 376, 847, 1005, 1294, 1306
MhlI GDGCHC 3 cut(s) 1341, 1538, 1600
MlsI TGGCCA 1 cut(s) 2027
MluNI TGGCCA 1 cut(s) 2027
MlyI GAGTC 2 cut(s) 1207, 1755
MmeI TCCRAC 1 cut(s) 112
Mox20I TGGCCA 1 cut(s) 2027
Mph1103I ATGCAT 1 cut(s) 1879
MroI TCCGGA 1 cut(s) 1201
MscI TGGCCA 1 cut(s) 2027
MseI TTAA 9 cut(s) 285, 725, 1227, 1524, 1586, 1616, 1806, 1868, 2078
Msp20I TGGCCA 1 cut(s) 2027
MspA1I CMGCKG 1 cut(s) 522
MspI CCGG 3 cut(s) 1181, 1202, 1341
MspR9I CCNGG 2 cut(s) 1181, 1341
MssI GTTTAAAC 1 cut(s) 1807
Mva1269I GAATGC 2 cut(s) 1155, 1826
MwoI GCNNNNNNNGC 6 cut(s) 266, 482, 1350, 1901, 1922, 1958
NciI CCSGG 2 cut(s) 1181, 1341
NcoI CCATGG 1 cut(s) 2022
NdeI CATATG 1 cut(s) 1918
NdeII GATC 8 cut(s) 97, 376, 847, 997, 1005, 1294, 1306, 1447
NlaIV GGNNCC 2 cut(s) 1007, 1296
NmuCI GTSAC 2 cut(s) 16, 671
NsiI ATGCAT 1 cut(s) 1879
NspI RCATGY 2 cut(s) 1660, 2000
PaeR7I CTCGAG 1 cut(s) 1737
PagI TCATGA 2 cut(s) 6, 600
PaqCI CACCTGC 1 cut(s) 2230
PctI GAATGC 2 cut(s) 1155, 1826
PfeI GAWTC 5 cut(s) 84, 178, 239, 893, 2252
PkrI GCNGC 7 cut(s) 883, 1516, 1706, 1773, 1825, 1897, 1924
PleI GAGTC 2 cut(s) 1206, 1754
PmeI GTTTAAAC 1 cut(s) 1807
PpsI GAGTC 2 cut(s) 1206, 1754
PshBI ATTAAT 1 cut(s) 1616
Psp1406I AACGTT 1 cut(s) 1815
PspN4I GGNNCC 2 cut(s) 1007, 1296
PspPI GGNCC 2 cut(s) 145, 1028
PspXI VCTCGAGB 1 cut(s) 1737
PsrI GAACNNNNNNTAC 2 cut(s) 247, 279
PstI CTGCAG 1 cut(s) 1533
PsuI RGATCY 5 cut(s) 376, 847, 1005, 1294, 1306
PvuII CAGCTG 1 cut(s) 522
RsaI GTAC 7 cut(s) 45, 939, 1014, 1470, 1489, 2241, 2261
RsaNI GTAC 7 cut(s) 44, 938, 1013, 1469, 1488, 2240, 2260
SaqAI TTAA 9 cut(s) 285, 725, 1227, 1524, 1586, 1616, 1806, 1868, 2078
SatI GCNGC 7 cut(s) 882, 1515, 1705, 1772, 1824, 1896, 1923
Sau3AI GATC 8 cut(s) 97, 376, 847, 997, 1005, 1294, 1306, 1447
Sau96I GGNCC 2 cut(s) 145, 1028
SchI GAGTC 2 cut(s) 1207, 1755
ScrFI CCNGG 2 cut(s) 1181, 1341
SduI GDGCHC 3 cut(s) 1341, 1538, 1600
SfaNI GCATC 4 cut(s) 404, 1810, 1864, 1886
SfcI CTRYAG 2 cut(s) 885, 1529
Sfr274I CTCGAG 1 cut(s) 1737
SinI GGWCC 1 cut(s) 1028
SlaI CTCGAG 1 cut(s) 1737
SmlI CTYRAG 3 cut(s) 404, 1686, 1737
SmoI CTYRAG 3 cut(s) 404, 1686, 1737
SsiI CCGC 4 cut(s) 267, 818, 1771, 1895
SspMI CTAG 5 cut(s) 834, 1089, 1776, 1905, 2216
StyD4I CCNGG 2 cut(s) 1179, 1339
StyI CCWWGG 3 cut(s) 439, 1845, 2022
TaaI ACNGT 3 cut(s) 608, 1436, 1492
TaiI ACGT 3 cut(s) 172, 600, 1818
TaqI TCGA 5 cut(s) 1453, 1719, 1738, 1957, 2164
TatI WGTACW 4 cut(s) 937, 1012, 1487, 2239
TauI GCSGC 2 cut(s) 1774, 1898
TfiI GAWTC 5 cut(s) 84, 178, 239, 893, 2252
Tru1I TTAA 9 cut(s) 285, 725, 1227, 1524, 1586, 1616, 1806, 1868, 2078
Tru9I TTAA 9 cut(s) 285, 725, 1227, 1524, 1586, 1616, 1806, 1868, 2078
TscAI CASTG 5 cut(s) 682, 1294, 1497, 1917, 2053
TseFI GTSAC 2 cut(s) 16, 671
TseI GCWGC 5 cut(s) 881, 1514, 1704, 1823, 1922
Tsp45I GTSAC 2 cut(s) 16, 671
TspDTI ATGAA 8 cut(s) 23, 203, 206, 617, 648, 686, 932, 1103
TspGWI ACGGA 3 cut(s) 13, 990, 1213
TspRI CASTG 5 cut(s) 682, 1294, 1497, 1917, 2053
VpaK11BI GGWCC 1 cut(s) 1028
VspI ATTAAT 1 cut(s) 1616
XagI CCTNNNNNAGG 1 cut(s) 78
XapI RAATTY 7 cut(s) 331, 479, 558, 693, 1146, 1863, 2109
XbaI TCTAGA 1 cut(s) 1088
XceI RCATGY 2 cut(s) 1660, 2000
XcmI CCANNNNNNNNNTGG 1 cut(s) 1182
XhoI CTCGAG 1 cut(s) 1737
XmiI GTMKAC 1 cut(s) 952
XspI CTAG 5 cut(s) 834, 1089, 1776, 1905, 2216
Zsp2I ATGCAT 1 cut(s) 1879
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.