pycom03g02950

transposition, RNA-mediated

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr3
OG0000276
Physical Location & Seq
Forward (+)
2305959 .. 2306231
273 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom03g02950.1

Sequence Viewer

Length: 273 bp
ATGAGCAAAGTGTCGATAGATGCGGAGAAAGAGCAGCTGGAGGTGATTGGAGATGGAGTTGATTCCATGAGATTGACCATGTCGTTGAGGAAGAAGCTTGGCCATGCCACCAAACTAAGTGTTGAAGAAGTTAAAGGAAAAACCGACGATAAAAAGCCAACTACTTATCCAATAACTGGGACATCAAGCTATATCCAATATCCACAACATCCTCCACACCATCACGTAGTTCATGATCAATATCCACAAGAAACCAATTGTTCTATTATGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
HMA

Protein Analysis

91

Amino Acids

10.15

Weight (kDa)

6.57

Isoelectric Point (pI)

29.31

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000276)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G05030 AT4G05030
fragaria_vesca FvH4_3g24080 FvH4_3g24080 FvH4_3g24100 FvH4_3g24100 FvH4_3g42050 FvH4_3g42060 FvH4_3g42070 FvH4_3g42071 FvH4_3g42080 FvH4_3g42090 FvH4_3g42100 FvH4_3g42110
malus_domestica MD03G1038100.v1.1 MD03G1038400.v1.1 MD03G1038600.v1.1 MD03G1038900.v1.1 MD03G1039000.v1.1 MD03G1039100.v1.1 MD03G1188500.v1.1 MD10G1233100.v1.1 MD10G1233300.v1.1 MD10G1341200.v1.1 MD11G1039200.v1.1 MD11G1039300.v1.1 MD11G1204400.v1.1 MD11G1204600.v1.1
prunus_persica Prupe.2G123900_v2.0.a1 Prupe.4G001900_v2.0.a1 Prupe.4G234700_v2.0.a1 Prupe.4G234800_v2.0.a1 Prupe.6G025900_v2.0.a1 Prupe.6G030200_v2.0.a1 Prupe.6G030300_v2.0.a1 Prupe.6G030400_v2.0.a1 Prupe.6G030600_v2.0.a1 Prupe.6G030900_v2.0.a1 Prupe.6G031000_v2.0.a1 Prupe.6G031100_v2.0.a1 Prupe.6G031100_v2.0.a1
pyrus_communis pycom03g02940 pycom03g02950 pycom03g02980 pycom03g02990 pycom03g03010 pycom11g03310 pycom11g03320
rosa_chinensis RchiOBHm_Chr3g0484311 RchiOBHm_Chr5g0000231 RchiOBHm_Chr5g0042661 RchiOBHm_Chr5g0042671 RchiOBHm_Chr5g0075281 RchiOBHm_Chr5g0075291 RchiOBHm_Chr5g0075321 RchiOBHm_Chr5g0075331
rosa_laevigata RLG00000034149 RLG00000036545 RLG00000036546 RLG00000036547 RLG00000036548 RLG00000036549 RLG00000036550
rosa_multiflora Rmu_sc0000295.1_g000011 Rmu_sc0000770.1_g000041 Rmu_sc0000770.1_g000049 Rmu_sc0002564.1_g000002 Rmu_sc0002564.1_g000003 Rmu_sc0002564.1_g000016
rosa_roxburghii Rroxscaffold_1G00006200 Rroxscaffold_1G00006210 Rroxscaffold_1G00006220 Rroxscaffold_1G00006250 Rroxscaffold_1G00006270 Rroxscaffold_1G00037900 Rroxscaffold_1G00037980 Rroxscaffold_6G00397790
rosa_rugosa Rorug03G0210600 Rorug05G0203800 Rorug05G0203900 Rorug05G0438100 Rorug05G0438200 Rorug05G0438700 Rorug05G0438900 Rorug05G0438900
rosa_samantha Rh3AG259700 Rh3AG259800 Rh3BG296300 Rh3DG289900 Rh5AG001600 Rh5AG288900 Rh5AG289000 Rh5AG289200 Rh5AG494800 Rh5AG495000 Rh5AG495200 Rh5AG495300 Rh5BG293000 Rh5BG293100 Rh5BG293300 Rh5BG516400 Rh5BG516500 Rh5BG516900 Rh5BG517000 Rh5CG001900 Rh5CG325700 Rh5CG325900 Rh5CG326000 Rh5CG540200 Rh5CG540300 Rh5CG540500 Rh5CG540600 Rh5DG001900 Rh5DG302900 Rh5DG303000 Rh5DG303200 Rh5DG529100 Rh5DG529300 Rh5DG529400 Rh5DG532500
rosa_wichuraiana Rw3G023420 Rw3G023430 Rw5G000210 Rw5G026800 Rw5G045910 Rw5G045920 Rw5G045930 Rw5G045940 Rw5G045950

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 176
AciI CCGC 1 cut(s) 23
AcoI YGGCCR 1 cut(s) 100
AfiI CCNNNNNNNGG 1 cut(s) 176
AgsI TTSAA 1 cut(s) 125
AluBI AGCT 3 cut(s) 37, 97, 189
AluI AGCT 3 cut(s) 37, 97, 189
AoxI GGCC 1 cut(s) 100
ApeKI GCWGC 1 cut(s) 34
AsuHPI GGTGA 1 cut(s) 55
BalI TGGCCA 1 cut(s) 102
BbvI GCAGC 1 cut(s) 46
BccI CCATC 2 cut(s) 47, 228
BclI TGATCA 1 cut(s) 235
BisI GCNGC 1 cut(s) 35
BlsI GCNGC 1 cut(s) 36
BmrI ACTGGG 1 cut(s) 186
BmsI GCATC 1 cut(s) 10
BmuI ACTGGG 1 cut(s) 186
BpmI CTGGAG 1 cut(s) 59
BsaAI YACGTR 1 cut(s) 226
BsaBI GATNNNNATC 1 cut(s) 240
BsaXI ACNNNNNCTCC 2 cut(s) 42, 72
Bsc4I CCNNNNNNNGG 1 cut(s) 176
Bse1I ACTGG 1 cut(s) 181
Bse8I GATNNNNATC 1 cut(s) 240
BseGI GGATG 1 cut(s) 208
BseJI GATNNNNATC 1 cut(s) 240
BseLI CCNNNNNNNGG 1 cut(s) 176
BseNI ACTGG 1 cut(s) 181
BseXI GCAGC 1 cut(s) 46
BshFI GGCC 1 cut(s) 102
BslFI GGGAC 1 cut(s) 193
BslI CCNNNNNNNGG 1 cut(s) 176
BsmFI GGGAC 1 cut(s) 193
BsnI GGCC 1 cut(s) 102
Bsp143I GATC 1 cut(s) 235
BspACI CCGC 1 cut(s) 23
BspANI GGCC 1 cut(s) 102
BspHI TCATGA 1 cut(s) 232
BsrI ACTGG 1 cut(s) 181
BssMI GATC 1 cut(s) 235
BstBAI YACGTR 1 cut(s) 226
BstDEI CTNAG 1 cut(s) 116
BstF5I GGATG 1 cut(s) 208
BstKTI GATC 1 cut(s) 238
BstMBI GATC 1 cut(s) 235
BstV1I GCAGC 1 cut(s) 46
BsuRI GGCC 1 cut(s) 102
BtsCI GGATG 1 cut(s) 208
CciI TCATGA 1 cut(s) 232
CviAII CATG 4 cut(s) 67, 79, 104, 233
CviJI RGCY 5 cut(s) 37, 97, 102, 157, 189
CviKI_1 RGCY 5 cut(s) 37, 97, 102, 157, 189
DdeI CTNAG 1 cut(s) 116
DpnI GATC 1 cut(s) 237
DpnII GATC 1 cut(s) 235
EaeI YGGCCR 1 cut(s) 100
FaeI CATG 4 cut(s) 70, 82, 107, 236
FaiI YATR 6 cut(s) 68, 80, 105, 192, 234, 269
FaqI GGGAC 1 cut(s) 193
FatI CATG 4 cut(s) 66, 78, 103, 232
FbaI TGATCA 1 cut(s) 235
Fnu4HI GCNGC 1 cut(s) 35
FokI GGATG 1 cut(s) 195
Fsp4HI GCNGC 1 cut(s) 35
GluI GCNGC 1 cut(s) 35
GsuI CTGGAG 1 cut(s) 59
HaeIII GGCC 1 cut(s) 102
Hin1II CATG 4 cut(s) 70, 82, 107, 236
HindIII AAGCTT 1 cut(s) 95
HinfI GANTC 1 cut(s) 62
HphI GGTGA 1 cut(s) 55
Hpy188III TCNNGA 1 cut(s) 233
Hpy99I CGWCG 1 cut(s) 149
HpyCH4IV ACGT 1 cut(s) 225
HpyF3I CTNAG 1 cut(s) 116
HpySE526I ACGT 1 cut(s) 225
Hsp92II CATG 4 cut(s) 70, 82, 107, 236
Ksp22I TGATCA 1 cut(s) 235
Kzo9I GATC 1 cut(s) 235
LpnPI CCDG 2 cut(s) 23, 162
Lsp1109I GCAGC 1 cut(s) 46
LweI GCATC 1 cut(s) 10
MaeII ACGT 1 cut(s) 225
MalI GATC 1 cut(s) 237
MboI GATC 1 cut(s) 235
MboII GAAGA 2 cut(s) 103, 137
MfeI CAATTG 1 cut(s) 256
MlsI TGGCCA 1 cut(s) 102
MluCI AATT 1 cut(s) 256
MluNI TGGCCA 1 cut(s) 102
MnlI CCTC 3 cut(s) 34, 81, 222
Mox20I TGGCCA 1 cut(s) 102
MscI TGGCCA 1 cut(s) 102
MseI TTAA 1 cut(s) 132
Msp20I TGGCCA 1 cut(s) 102
MspA1I CMGCKG 1 cut(s) 37
MunI CAATTG 1 cut(s) 256
NdeII GATC 1 cut(s) 235
NlaIII CATG 4 cut(s) 70, 82, 107, 236
PagI TCATGA 1 cut(s) 232
PfeI GAWTC 1 cut(s) 62
PflFI GACNNNGTC 1 cut(s) 79
PflMI CCANNNNNTGG 1 cut(s) 176
PkrI GCNGC 1 cut(s) 36
Ppu21I YACGTR 1 cut(s) 226
PsyI GACNNNGTC 1 cut(s) 79
PvuII CAGCTG 1 cut(s) 37
SaqAI TTAA 1 cut(s) 132
SatI GCNGC 1 cut(s) 35
Sau3AI GATC 1 cut(s) 235
SetI ASST 5 cut(s) 39, 45, 99, 191, 228
SfaNI GCATC 1 cut(s) 10
Sse9I AATT 1 cut(s) 256
SsiI CCGC 1 cut(s) 23
TaiI ACGT 1 cut(s) 228
TaqI TCGA 1 cut(s) 14
TasI AATT 1 cut(s) 256
TfiI GAWTC 1 cut(s) 62
Tru1I TTAA 1 cut(s) 132
Tru9I TTAA 1 cut(s) 132
TseI GCWGC 1 cut(s) 34
TspDTI ATGAA 1 cut(s) 221
Tth111I GACNNNGTC 1 cut(s) 79
Van91I CCANNNNNTGG 1 cut(s) 176
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.