Rh5DG001900

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5D
OG0000276
Physical Location & Seq
Forward (+)
179830 .. 180009
180 bp
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UTR
Exon/CDS
Intron
Rh5DG001900.1

Sequence Viewer

Length: 180 bp
ATGTACTTTGTTGTGTGGCTGGACTGGATGGTGCATGCAGGTGTGAGCTTTATGGCGTTAGGAGAGGAGAAGGACAGCGTCGTGGTGATTGGGGAGGGAGTAGTAGACGCCATCAAGTTGGCTAAGAGCCTGAGGAAGAAGTTCAAGAACACTCACATTATCACCGTTGCAGAGGTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
HMA

Protein Analysis

59

Amino Acids

6.61

Weight (kDa)

6.71

Isoelectric Point (pI)

29.57

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000276)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G05030 AT4G05030
fragaria_vesca FvH4_3g24080 FvH4_3g24080 FvH4_3g24100 FvH4_3g24100 FvH4_3g42050 FvH4_3g42060 FvH4_3g42070 FvH4_3g42071 FvH4_3g42080 FvH4_3g42090 FvH4_3g42100 FvH4_3g42110
malus_domestica MD03G1038100.v1.1 MD03G1038400.v1.1 MD03G1038600.v1.1 MD03G1038900.v1.1 MD03G1039000.v1.1 MD03G1039100.v1.1 MD03G1188500.v1.1 MD10G1233100.v1.1 MD10G1233300.v1.1 MD10G1341200.v1.1 MD11G1039200.v1.1 MD11G1039300.v1.1 MD11G1204400.v1.1 MD11G1204600.v1.1
prunus_persica Prupe.2G123900_v2.0.a1 Prupe.4G001900_v2.0.a1 Prupe.4G234700_v2.0.a1 Prupe.4G234800_v2.0.a1 Prupe.6G025900_v2.0.a1 Prupe.6G030200_v2.0.a1 Prupe.6G030300_v2.0.a1 Prupe.6G030400_v2.0.a1 Prupe.6G030600_v2.0.a1 Prupe.6G030900_v2.0.a1 Prupe.6G031000_v2.0.a1 Prupe.6G031100_v2.0.a1 Prupe.6G031100_v2.0.a1
pyrus_communis pycom03g02940 pycom03g02950 pycom03g02980 pycom03g02990 pycom03g03010 pycom11g03310 pycom11g03320
rosa_chinensis RchiOBHm_Chr3g0484311 RchiOBHm_Chr5g0000231 RchiOBHm_Chr5g0042661 RchiOBHm_Chr5g0042671 RchiOBHm_Chr5g0075281 RchiOBHm_Chr5g0075291 RchiOBHm_Chr5g0075321 RchiOBHm_Chr5g0075331
rosa_laevigata RLG00000034149 RLG00000036545 RLG00000036546 RLG00000036547 RLG00000036548 RLG00000036549 RLG00000036550
rosa_multiflora Rmu_sc0000295.1_g000011 Rmu_sc0000770.1_g000041 Rmu_sc0000770.1_g000049 Rmu_sc0002564.1_g000002 Rmu_sc0002564.1_g000003 Rmu_sc0002564.1_g000016
rosa_roxburghii Rroxscaffold_1G00006200 Rroxscaffold_1G00006210 Rroxscaffold_1G00006220 Rroxscaffold_1G00006250 Rroxscaffold_1G00006270 Rroxscaffold_1G00037900 Rroxscaffold_1G00037980 Rroxscaffold_6G00397790
rosa_rugosa Rorug03G0210600 Rorug05G0203800 Rorug05G0203900 Rorug05G0438100 Rorug05G0438200 Rorug05G0438700 Rorug05G0438900 Rorug05G0438900
rosa_samantha Rh3AG259700 Rh3AG259800 Rh3BG296300 Rh3DG289900 Rh5AG001600 Rh5AG288900 Rh5AG289000 Rh5AG289200 Rh5AG494800 Rh5AG495000 Rh5AG495200 Rh5AG495300 Rh5BG293000 Rh5BG293100 Rh5BG293300 Rh5BG516400 Rh5BG516500 Rh5BG516900 Rh5BG517000 Rh5CG001900 Rh5CG325700 Rh5CG325900 Rh5CG326000 Rh5CG540200 Rh5CG540300 Rh5CG540500 Rh5CG540600 Rh5DG001900 Rh5DG302900 Rh5DG303000 Rh5DG303200 Rh5DG529100 Rh5DG529300 Rh5DG529400 Rh5DG532500
rosa_wichuraiana Rw3G023420 Rw3G023430 Rw5G000210 Rw5G026800 Rw5G045910 Rw5G045920 Rw5G045930 Rw5G045940 Rw5G045950

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 29
Acc36I ACCTGC 1 cut(s) 29
AccI GTMKAC 1 cut(s) 105
AcyI GRCGYC 1 cut(s) 108
AfaI GTAC 1 cut(s) 5
AgsI TTSAA 1 cut(s) 145
AluBI AGCT 1 cut(s) 48
AluI AGCT 1 cut(s) 48
Asp700I GAANNNNTTC 1 cut(s) 140
AsuHPI GGTGA 2 cut(s) 97, 154
AxyI CCTNAGG 1 cut(s) 131
BccI CCATC 2 cut(s) 22, 119
BfuAI ACCTGC 1 cut(s) 29
BsaHI GRCGYC 1 cut(s) 108
Bse1I ACTGG 1 cut(s) 29
Bse21I CCTNAGG 1 cut(s) 131
BseGI GGATG 1 cut(s) 33
BseMII CTCAG 1 cut(s) 122
BseNI ACTGG 1 cut(s) 29
BseRI GAGGAG 1 cut(s) 80
BspCNI CTCAG 1 cut(s) 123
BspMI ACCTGC 1 cut(s) 29
BsrI ACTGG 1 cut(s) 29
BssNI GRCGYC 1 cut(s) 108
Bst4CI ACNGT 1 cut(s) 166
BstACI GRCGYC 1 cut(s) 108
BstC8I GCNNGC 1 cut(s) 36
BstDEI CTNAG 2 cut(s) 123, 131
BstF5I GGATG 1 cut(s) 33
BstNSI RCATGY 1 cut(s) 38
BstXI CCANNNNNNTGG 1 cut(s) 118
Bsu36I CCTNAGG 1 cut(s) 131
BtsCI GGATG 1 cut(s) 33
BveI ACCTGC 1 cut(s) 29
Cac8I GCNNGC 1 cut(s) 36
CseI GACGC 2 cut(s) 67, 116
Csp6I GTAC 1 cut(s) 4
CviAII CATG 1 cut(s) 35
CviJI RGCY 4 cut(s) 19, 48, 122, 129
CviKI_1 RGCY 4 cut(s) 19, 48, 122, 129
CviQI GTAC 1 cut(s) 4
DdeI CTNAG 2 cut(s) 123, 131
Eco81I CCTNAGG 1 cut(s) 131
FaeI CATG 1 cut(s) 38
FaiI YATR 2 cut(s) 36, 53
FatI CATG 1 cut(s) 34
FblI GTMKAC 1 cut(s) 105
FokI GGATG 1 cut(s) 40
HgaI GACGC 2 cut(s) 67, 116
Hin1I GRCGYC 1 cut(s) 108
Hin1II CATG 1 cut(s) 38
HphI GGTGA 2 cut(s) 97, 154
Hpy166II GTNNAC 1 cut(s) 106
Hpy188III TCNNGA 1 cut(s) 145
Hpy8I GTNNAC 1 cut(s) 106
Hpy99I CGWCG 1 cut(s) 83
HpyAV CCTTC 1 cut(s) 64
HpyCH4III ACNGT 1 cut(s) 166
HpyCH4V TGCA 3 cut(s) 34, 38, 170
HpyF3I CTNAG 2 cut(s) 123, 131
Hsp92I GRCGYC 1 cut(s) 108
Hsp92II CATG 1 cut(s) 38
LpnPI CCDG 4 cut(s) 5, 10, 24, 143
MboII GAAGA 1 cut(s) 148
MnlI CCTC 4 cut(s) 58, 88, 126, 166
MroXI GAANNNNTTC 1 cut(s) 140
MslI CAYNNNNRTG 1 cut(s) 39
NlaIII CATG 1 cut(s) 38
NspI RCATGY 1 cut(s) 38
PaeI GCATGC 1 cut(s) 38
PaqCI CACCTGC 1 cut(s) 29
PdmI GAANNNNTTC 1 cut(s) 140
PflFI GACNNNGTC 1 cut(s) 77
PsyI GACNNNGTC 1 cut(s) 77
RsaI GTAC 1 cut(s) 5
RsaNI GTAC 1 cut(s) 4
RseI CAYNNNNRTG 1 cut(s) 39
SetI ASST 3 cut(s) 43, 50, 177
SgeI CNNG 8 cut(s) 32, 37, 47, 51, 94, 127, 142, 157
SmiMI CAYNNNNRTG 1 cut(s) 39
SphI GCATGC 1 cut(s) 38
TaaI ACNGT 1 cut(s) 166
TatI WGTACW 1 cut(s) 3
Tth111I GACNNNGTC 1 cut(s) 77
XceI RCATGY 1 cut(s) 38
XmiI GTMKAC 1 cut(s) 105
XmnI GAANNNNTTC 1 cut(s) 140
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.