RLG00000036549

transposition, RNA-mediated

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr7
OG0000276
Physical Location & Seq
Reverse (-)
81828506 .. 81829308
803 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000036549

Sequence Viewer

Length: 357 bp
ATGGCACAGAAAAAGATAGTTATGAAGGTGCAAATGAGCTCTGAGAAATGCAGAACCAAGGCCTTGAAGATTGCCGCAGTGGCCAAAGGCGTGGGCAAAGTGTCGATAGAACCGGAGAAAGATCAGGTGGAAGTGATCGGAAGCGGGATTGACTCCATGACCTTGACCATGACGATGAGGAAGAAGGTTGGGCATGCAGACATACTGAGTATTGAAGAAGTGAAAGCCGAGGAGAAAAAGCCTGATGGGTCAATTCCAATTACTTGCACATCAAGCTATAGTTATGCTCACTATCCGCGATATCCCACGCACTATCATGTGGTTCGTGAGGAACCAACCACTTGCTCCATTATGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
HMA

Protein Analysis

119

Amino Acids

13.09

Weight (kDa)

8.96

Isoelectric Point (pI)

43.79

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000276)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G05030 AT4G05030
fragaria_vesca FvH4_3g24080 FvH4_3g24080 FvH4_3g24100 FvH4_3g24100 FvH4_3g42050 FvH4_3g42060 FvH4_3g42070 FvH4_3g42071 FvH4_3g42080 FvH4_3g42090 FvH4_3g42100 FvH4_3g42110
malus_domestica MD03G1038100.v1.1 MD03G1038400.v1.1 MD03G1038600.v1.1 MD03G1038900.v1.1 MD03G1039000.v1.1 MD03G1039100.v1.1 MD03G1188500.v1.1 MD10G1233100.v1.1 MD10G1233300.v1.1 MD10G1341200.v1.1 MD11G1039200.v1.1 MD11G1039300.v1.1 MD11G1204400.v1.1 MD11G1204600.v1.1
prunus_persica Prupe.2G123900_v2.0.a1 Prupe.4G001900_v2.0.a1 Prupe.4G234700_v2.0.a1 Prupe.4G234800_v2.0.a1 Prupe.6G025900_v2.0.a1 Prupe.6G030200_v2.0.a1 Prupe.6G030300_v2.0.a1 Prupe.6G030400_v2.0.a1 Prupe.6G030600_v2.0.a1 Prupe.6G030900_v2.0.a1 Prupe.6G031000_v2.0.a1 Prupe.6G031100_v2.0.a1 Prupe.6G031100_v2.0.a1
pyrus_communis pycom03g02940 pycom03g02950 pycom03g02980 pycom03g02990 pycom03g03010 pycom11g03310 pycom11g03320
rosa_chinensis RchiOBHm_Chr3g0484311 RchiOBHm_Chr5g0000231 RchiOBHm_Chr5g0042661 RchiOBHm_Chr5g0042671 RchiOBHm_Chr5g0075281 RchiOBHm_Chr5g0075291 RchiOBHm_Chr5g0075321 RchiOBHm_Chr5g0075331
rosa_laevigata RLG00000034149 RLG00000036545 RLG00000036546 RLG00000036547 RLG00000036548 RLG00000036549 RLG00000036550
rosa_multiflora Rmu_sc0000295.1_g000011 Rmu_sc0000770.1_g000041 Rmu_sc0000770.1_g000049 Rmu_sc0002564.1_g000002 Rmu_sc0002564.1_g000003 Rmu_sc0002564.1_g000016
rosa_roxburghii Rroxscaffold_1G00006200 Rroxscaffold_1G00006210 Rroxscaffold_1G00006220 Rroxscaffold_1G00006250 Rroxscaffold_1G00006270 Rroxscaffold_1G00037900 Rroxscaffold_1G00037980 Rroxscaffold_6G00397790
rosa_rugosa Rorug03G0210600 Rorug05G0203800 Rorug05G0203900 Rorug05G0438100 Rorug05G0438200 Rorug05G0438700 Rorug05G0438900 Rorug05G0438900
rosa_samantha Rh3AG259700 Rh3AG259800 Rh3BG296300 Rh3DG289900 Rh5AG001600 Rh5AG288900 Rh5AG289000 Rh5AG289200 Rh5AG494800 Rh5AG495000 Rh5AG495200 Rh5AG495300 Rh5BG293000 Rh5BG293100 Rh5BG293300 Rh5BG516400 Rh5BG516500 Rh5BG516900 Rh5BG517000 Rh5CG001900 Rh5CG325700 Rh5CG325900 Rh5CG326000 Rh5CG540200 Rh5CG540300 Rh5CG540500 Rh5CG540600 Rh5DG001900 Rh5DG302900 Rh5DG303000 Rh5DG303200 Rh5DG529100 Rh5DG529300 Rh5DG529400 Rh5DG532500
rosa_wichuraiana Rw3G023420 Rw3G023430 Rw5G000210 Rw5G026800 Rw5G045910 Rw5G045920 Rw5G045930 Rw5G045940 Rw5G045950

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 298
AciI CCGC 3 cut(s) 75, 144, 296
AcoI YGGCCR 1 cut(s) 81
AgsI TTSAA 2 cut(s) 67, 215
AluBI AGCT 2 cut(s) 39, 276
AluI AGCT 2 cut(s) 39, 276
Alw21I GWGCWC 1 cut(s) 41
AoxI GGCC 2 cut(s) 60, 81
BalI TGGCCA 1 cut(s) 83
BanII GRGCYC 1 cut(s) 41
Bbv12I GWGCWC 1 cut(s) 41
BccI CCATC 1 cut(s) 239
BfmI CTRYAG 1 cut(s) 277
BglI GCCNNNNNGGC 1 cut(s) 80
BisI GCNGC 1 cut(s) 75
BlsI GCNGC 1 cut(s) 76
BmiI GGNNCC 1 cut(s) 333
BsaJI CCNNGG 2 cut(s) 57, 228
BsaWI WCCGGW 1 cut(s) 112
BseDI CCNNGG 2 cut(s) 57, 228
BseMII CTCAG 2 cut(s) 33, 197
BseRI GAGGAG 1 cut(s) 245
Bsh1236I CGCG 1 cut(s) 298
BshFI GGCC 2 cut(s) 62, 83
BsiHKAI GWGCWC 1 cut(s) 41
BsiSI CCGG 1 cut(s) 113
BsnI GGCC 2 cut(s) 62, 83
Bsp1286I GDGCHC 1 cut(s) 41
Bsp143I GATC 2 cut(s) 121, 135
BspACI CCGC 3 cut(s) 75, 144, 296
BspANI GGCC 2 cut(s) 62, 83
BspCNI CTCAG 2 cut(s) 34, 198
BspFNI CGCG 1 cut(s) 298
BspLI GGNNCC 1 cut(s) 333
BssECI CCNNGG 2 cut(s) 57, 228
BssMI GATC 2 cut(s) 121, 135
BssT1I CCWWGG 1 cut(s) 57
BstC8I GCNNGC 1 cut(s) 195
BstDEI CTNAG 2 cut(s) 42, 206
BstFNI CGCG 1 cut(s) 298
BstKTI GATC 2 cut(s) 124, 138
BstMBI GATC 2 cut(s) 121, 135
BstMWI GCNNNNNNNGC 2 cut(s) 80, 273
BstNSI RCATGY 1 cut(s) 197
BstSFI CTRYAG 1 cut(s) 277
BstUI CGCG 1 cut(s) 298
BstXI CCANNNNNNTGG 1 cut(s) 91
BsuRI GGCC 2 cut(s) 62, 83
BtsI GCAGTG 1 cut(s) 84
BtsIMutI CAGTG 1 cut(s) 84
Cac8I GCNNGC 1 cut(s) 195
CviAII CATG 4 cut(s) 157, 169, 194, 317
CviJI RGCY 6 cut(s) 39, 62, 83, 227, 241, 276
CviKI_1 RGCY 6 cut(s) 39, 62, 83, 227, 241, 276
DdeI CTNAG 2 cut(s) 42, 206
DpnI GATC 2 cut(s) 123, 137
DpnII GATC 2 cut(s) 121, 135
EaeI YGGCCR 1 cut(s) 81
Ecl136II GAGCTC 1 cut(s) 39
Eco130I CCWWGG 1 cut(s) 57
Eco147I AGGCCT 1 cut(s) 62
Eco24I GRGCYC 1 cut(s) 41
Eco32I GATATC 1 cut(s) 302
Eco53kI GAGCTC 1 cut(s) 39
EcoICRI GAGCTC 1 cut(s) 39
EcoRV GATATC 1 cut(s) 302
EcoT14I CCWWGG 1 cut(s) 57
EcoT38I GRGCYC 1 cut(s) 41
ErhI CCWWGG 1 cut(s) 57
FaeI CATG 4 cut(s) 160, 172, 197, 320
FaiI YATR 9 cut(s) 23, 158, 170, 195, 203, 279, 285, 318, 353
FatI CATG 4 cut(s) 156, 168, 193, 316
FauI CCCGC 1 cut(s) 137
Fnu4HI GCNGC 1 cut(s) 75
FriOI GRGCYC 1 cut(s) 41
Fsp4HI GCNGC 1 cut(s) 75
GluI GCNGC 1 cut(s) 75
HaeIII GGCC 2 cut(s) 62, 83
HapII CCGG 1 cut(s) 113
Hin1II CATG 4 cut(s) 160, 172, 197, 320
HinfI GANTC 1 cut(s) 152
HpaII CCGG 1 cut(s) 113
Hpy188I TCNGA 2 cut(s) 43, 140
Hpy188III TCNNGA 1 cut(s) 326
HpyAV CCTTC 2 cut(s) 19, 178
HpyCH4V TGCA 4 cut(s) 31, 51, 197, 267
HpyF10VI GCNNNNNNNGC 2 cut(s) 80, 273
HpyF3I CTNAG 2 cut(s) 42, 206
Hsp92II CATG 4 cut(s) 160, 172, 197, 320
Kzo9I GATC 2 cut(s) 121, 135
LmnI GCTCC 1 cut(s) 350
LpnPI CCDG 3 cut(s) 110, 126, 255
MalI GATC 2 cut(s) 123, 137
MboI GATC 2 cut(s) 121, 135
MboII GAAGA 3 cut(s) 79, 193, 227
MhlI GDGCHC 1 cut(s) 41
MlsI TGGCCA 1 cut(s) 83
MluCI AATT 2 cut(s) 252, 258
MluNI TGGCCA 1 cut(s) 83
MlyI GAGTC 1 cut(s) 146
MnlI CCTC 3 cut(s) 171, 223, 322
Mox20I TGGCCA 1 cut(s) 83
MscI TGGCCA 1 cut(s) 83
MslI CAYNNNNRTG 2 cut(s) 173, 315
Msp20I TGGCCA 1 cut(s) 83
MspI CCGG 1 cut(s) 113
MvnI CGCG 1 cut(s) 298
MwoI GCNNNNNNNGC 2 cut(s) 80, 273
NdeII GATC 2 cut(s) 121, 135
NlaIII CATG 4 cut(s) 160, 172, 197, 320
NlaIV GGNNCC 1 cut(s) 333
NmeAIII GCCGAG 1 cut(s) 253
NspI RCATGY 1 cut(s) 197
PaeI GCATGC 1 cut(s) 197
PceI AGGCCT 1 cut(s) 62
PkrI GCNGC 1 cut(s) 76
PleI GAGTC 1 cut(s) 146
PpsI GAGTC 1 cut(s) 146
Psp124BI GAGCTC 1 cut(s) 41
PspN4I GGNNCC 1 cut(s) 333
RseI CAYNNNNRTG 2 cut(s) 173, 315
SacI GAGCTC 1 cut(s) 41
SatI GCNGC 1 cut(s) 75
Sau3AI GATC 2 cut(s) 121, 135
SchI GAGTC 1 cut(s) 146
SduI GDGCHC 1 cut(s) 41
SetI ASST 6 cut(s) 30, 41, 129, 164, 189, 278
SfcI CTRYAG 1 cut(s) 277
SmiMI CAYNNNNRTG 2 cut(s) 173, 315
SphI GCATGC 1 cut(s) 197
Sse9I AATT 2 cut(s) 252, 258
SseBI AGGCCT 1 cut(s) 62
SsiI CCGC 3 cut(s) 75, 144, 296
SstI GAGCTC 1 cut(s) 41
StuI AGGCCT 1 cut(s) 62
StyI CCWWGG 1 cut(s) 57
TaqI TCGA 1 cut(s) 104
TasI AATT 2 cut(s) 252, 258
TauI GCSGC 1 cut(s) 77
TscAI CASTG 1 cut(s) 84
TspDTI ATGAA 1 cut(s) 38
TspRI CASTG 1 cut(s) 84
XceI RCATGY 1 cut(s) 197
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.