Prupe.6G031000_v2.0.a1

transposition, RNA-mediated

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp06
OG0000276
Physical Location & Seq
Forward (+)
2413397 .. 2414137
741 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.6G031000.1

Sequence Viewer

Length: 369 bp
ATGGTGCAGCAAAAGATAGTTATGAAGTTGCAAATGAACTGTGAGAAACACAGAACTAATGCCTTGAAGATTGCTGCAGTCGCTAAAGGCGTGAGCAAAGTGTCGATAGAAGCTGAGAAAGAGCAGATGGAGGTGATTGGAGATGGAGTCGATACCACGAGATTGACCATGTCGTTGAGGAAGAAGCTTGGCTCCGCCGCCATAGTAAGTGTTGAACCAGTGAAAGCAAATGCGGAGGAGGAGAAACCAACTCCAACAACAACACAATATTGGACATCAAGCTATGTCCATCATCCACGACATCGTTCTACTCACTATCGTGTAGTTCATGATGAATCCCCGCAACAGATCAATTGTTCTATTATGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
HMA

Protein Analysis

123

Amino Acids

13.73

Weight (kDa)

9.17

Isoelectric Point (pI)

34.89

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000276)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G05030 AT4G05030
fragaria_vesca FvH4_3g24080 FvH4_3g24080 FvH4_3g24100 FvH4_3g24100 FvH4_3g42050 FvH4_3g42060 FvH4_3g42070 FvH4_3g42071 FvH4_3g42080 FvH4_3g42090 FvH4_3g42100 FvH4_3g42110
malus_domestica MD03G1038100.v1.1 MD03G1038400.v1.1 MD03G1038600.v1.1 MD03G1038900.v1.1 MD03G1039000.v1.1 MD03G1039100.v1.1 MD03G1188500.v1.1 MD10G1233100.v1.1 MD10G1233300.v1.1 MD10G1341200.v1.1 MD11G1039200.v1.1 MD11G1039300.v1.1 MD11G1204400.v1.1 MD11G1204600.v1.1
prunus_persica Prupe.2G123900_v2.0.a1 Prupe.4G001900_v2.0.a1 Prupe.4G234700_v2.0.a1 Prupe.4G234800_v2.0.a1 Prupe.6G025900_v2.0.a1 Prupe.6G030200_v2.0.a1 Prupe.6G030300_v2.0.a1 Prupe.6G030400_v2.0.a1 Prupe.6G030600_v2.0.a1 Prupe.6G030900_v2.0.a1 Prupe.6G031000_v2.0.a1 Prupe.6G031100_v2.0.a1 Prupe.6G031100_v2.0.a1
pyrus_communis pycom03g02940 pycom03g02950 pycom03g02980 pycom03g02990 pycom03g03010 pycom11g03310 pycom11g03320
rosa_chinensis RchiOBHm_Chr3g0484311 RchiOBHm_Chr5g0000231 RchiOBHm_Chr5g0042661 RchiOBHm_Chr5g0042671 RchiOBHm_Chr5g0075281 RchiOBHm_Chr5g0075291 RchiOBHm_Chr5g0075321 RchiOBHm_Chr5g0075331
rosa_laevigata RLG00000034149 RLG00000036545 RLG00000036546 RLG00000036547 RLG00000036548 RLG00000036549 RLG00000036550
rosa_multiflora Rmu_sc0000295.1_g000011 Rmu_sc0000770.1_g000041 Rmu_sc0000770.1_g000049 Rmu_sc0002564.1_g000002 Rmu_sc0002564.1_g000003 Rmu_sc0002564.1_g000016
rosa_roxburghii Rroxscaffold_1G00006200 Rroxscaffold_1G00006210 Rroxscaffold_1G00006220 Rroxscaffold_1G00006250 Rroxscaffold_1G00006270 Rroxscaffold_1G00037900 Rroxscaffold_1G00037980 Rroxscaffold_6G00397790
rosa_rugosa Rorug03G0210600 Rorug05G0203800 Rorug05G0203900 Rorug05G0438100 Rorug05G0438200 Rorug05G0438700 Rorug05G0438900 Rorug05G0438900
rosa_samantha Rh3AG259700 Rh3AG259800 Rh3BG296300 Rh3DG289900 Rh5AG001600 Rh5AG288900 Rh5AG289000 Rh5AG289200 Rh5AG494800 Rh5AG495000 Rh5AG495200 Rh5AG495300 Rh5BG293000 Rh5BG293100 Rh5BG293300 Rh5BG516400 Rh5BG516500 Rh5BG516900 Rh5BG517000 Rh5CG001900 Rh5CG325700 Rh5CG325900 Rh5CG326000 Rh5CG540200 Rh5CG540300 Rh5CG540500 Rh5CG540600 Rh5DG001900 Rh5DG302900 Rh5DG303000 Rh5DG303200 Rh5DG529100 Rh5DG529300 Rh5DG529400 Rh5DG532500
rosa_wichuraiana Rw3G023420 Rw3G023430 Rw5G000210 Rw5G026800 Rw5G045910 Rw5G045920 Rw5G045930 Rw5G045940 Rw5G045950

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 4 cut(s) 195, 198, 233, 341
AgsI TTSAA 2 cut(s) 67, 215
AleI CACNNNNGTG 1 cut(s) 318
AluBI AGCT 3 cut(s) 113, 187, 282
AluI AGCT 3 cut(s) 113, 187, 282
ApeKI GCWGC 2 cut(s) 7, 74
AsuHPI GGTGA 1 cut(s) 145
BauI CACGAG 1 cut(s) 157
BbvI GCAGC 2 cut(s) 19, 61
BccI CCATC 3 cut(s) 121, 137, 297
BfmI CTRYAG 1 cut(s) 75
BisI GCNGC 3 cut(s) 8, 75, 198
BlsI GCNGC 3 cut(s) 9, 76, 199
BmiI GGNNCC 1 cut(s) 193
BsaXI ACNNNNNCTCC 2 cut(s) 132, 162
Bse1I ACTGG 1 cut(s) 218
BseGI GGATG 1 cut(s) 292
BseMII CTCAG 1 cut(s) 105
BseNI ACTGG 1 cut(s) 218
BseRI GAGGAG 2 cut(s) 251, 254
BseXI GCAGC 2 cut(s) 19, 61
BsgI GTGCAG 1 cut(s) 26
Bsp143I GATC 1 cut(s) 348
BspACI CCGC 4 cut(s) 195, 198, 233, 341
BspCNI CTCAG 1 cut(s) 106
BspHI TCATGA 1 cut(s) 328
BspLI GGNNCC 1 cut(s) 193
BspMAI CTGCAG 1 cut(s) 79
BsrI ACTGG 1 cut(s) 218
BssMI GATC 1 cut(s) 348
BssSI CACGAG 1 cut(s) 157
Bst2BI CACGAG 1 cut(s) 157
Bst4CI ACNGT 1 cut(s) 41
BstDEI CTNAG 1 cut(s) 114
BstF5I GGATG 1 cut(s) 292
BstKTI GATC 1 cut(s) 351
BstMBI GATC 1 cut(s) 348
BstMWI GCNNNNNNNGC 1 cut(s) 80
BstSFI CTRYAG 1 cut(s) 75
BstV1I GCAGC 2 cut(s) 19, 61
BtsCI GGATG 1 cut(s) 292
BtsIMutI CAGTG 1 cut(s) 225
CciI TCATGA 1 cut(s) 328
CviAII CATG 2 cut(s) 169, 329
CviJI RGCY 4 cut(s) 113, 187, 192, 282
CviKI_1 RGCY 4 cut(s) 113, 187, 192, 282
DdeI CTNAG 1 cut(s) 114
DpnI GATC 1 cut(s) 350
DpnII GATC 1 cut(s) 348
EciI GGCGGA 1 cut(s) 184
FaeI CATG 2 cut(s) 172, 332
FaiI YATR 6 cut(s) 23, 170, 203, 285, 330, 365
FatI CATG 2 cut(s) 168, 328
FauI CCCGC 1 cut(s) 348
Fnu4HI GCNGC 3 cut(s) 8, 75, 198
FokI GGATG 1 cut(s) 279
Fsp4HI GCNGC 3 cut(s) 8, 75, 198
GluI GCNGC 3 cut(s) 8, 75, 198
Hin1II CATG 2 cut(s) 172, 332
HindIII AAGCTT 1 cut(s) 185
HinfI GANTC 2 cut(s) 147, 335
HphI GGTGA 1 cut(s) 145
Hpy188III TCNNGA 1 cut(s) 329
HpyCH4III ACNGT 1 cut(s) 41
HpyCH4V TGCA 3 cut(s) 7, 31, 77
HpyF10VI GCNNNNNNNGC 1 cut(s) 80
HpyF3I CTNAG 1 cut(s) 114
Hsp92II CATG 2 cut(s) 172, 332
Kzo9I GATC 1 cut(s) 348
LmnI GCTCC 1 cut(s) 197
LpnPI CCDG 1 cut(s) 231
Lsp1109I GCAGC 2 cut(s) 19, 61
MalI GATC 1 cut(s) 350
MboI GATC 1 cut(s) 348
MboII GAAGA 2 cut(s) 79, 193
MfeI CAATTG 1 cut(s) 352
MluCI AATT 1 cut(s) 352
MlyI GAGTC 1 cut(s) 156
MmeI TCCRAC 1 cut(s) 278
MnlI CCTC 4 cut(s) 124, 171, 229, 232
MslI CAYNNNNRTG 1 cut(s) 318
MunI CAATTG 1 cut(s) 352
MwoI GCNNNNNNNGC 1 cut(s) 80
NdeII GATC 1 cut(s) 348
NlaIII CATG 2 cut(s) 172, 332
NlaIV GGNNCC 1 cut(s) 193
OliI CACNNNNGTG 1 cut(s) 318
PagI TCATGA 1 cut(s) 328
PcsI WCGNNNNNNNCGW 1 cut(s) 87
PfeI GAWTC 1 cut(s) 335
PflFI GACNNNGTC 1 cut(s) 169
PkrI GCNGC 3 cut(s) 9, 76, 199
PleI GAGTC 1 cut(s) 155
PpsI GAGTC 1 cut(s) 155
PspN4I GGNNCC 1 cut(s) 193
PstI CTGCAG 1 cut(s) 79
PsyI GACNNNGTC 1 cut(s) 169
RseI CAYNNNNRTG 1 cut(s) 318
SatI GCNGC 3 cut(s) 8, 75, 198
Sau3AI GATC 1 cut(s) 348
SchI GAGTC 1 cut(s) 156
SetI ASST 4 cut(s) 115, 135, 189, 284
SfcI CTRYAG 1 cut(s) 75
SmiMI CAYNNNNRTG 1 cut(s) 318
Sse9I AATT 1 cut(s) 352
SsiI CCGC 4 cut(s) 195, 198, 233, 341
SspI AATATT 1 cut(s) 269
TaaI ACNGT 1 cut(s) 41
TaqI TCGA 2 cut(s) 104, 150
TasI AATT 1 cut(s) 352
TauI GCSGC 1 cut(s) 200
TfiI GAWTC 1 cut(s) 335
TscAI CASTG 1 cut(s) 225
TseI GCWGC 2 cut(s) 7, 74
TspDTI ATGAA 4 cut(s) 38, 50, 317, 348
TspRI CASTG 1 cut(s) 225
Tth111I GACNNNGTC 1 cut(s) 169
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.