Rh3BG296300

transposition, RNA-mediated

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3B
OG0000276
Physical Location & Seq
Reverse (-)
29729186 .. 29729965
780 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3BG296300.1

Sequence Viewer

Length: 183 bp
ATGAAGATTGCAGCAACTGCACCTGGTGTAAACAAAGTGTCAATACAAGGTGAACACAGAGATCATGTGGAGGTGATTGGGGATGGATTTGACTCGGTTTGCTTGACTAGGGCTTTGAGGAAGAAGCTTGGCTCTGCCGATTTAGTCAAGGTTGAGCAAGTGAAAGGATCCACAGATAACTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
HMA

Protein Analysis

60

Amino Acids

6.39

Weight (kDa)

7.93

Isoelectric Point (pI)

18.67

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000276)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G05030 AT4G05030
fragaria_vesca FvH4_3g24080 FvH4_3g24080 FvH4_3g24100 FvH4_3g24100 FvH4_3g42050 FvH4_3g42060 FvH4_3g42070 FvH4_3g42071 FvH4_3g42080 FvH4_3g42090 FvH4_3g42100 FvH4_3g42110
malus_domestica MD03G1038100.v1.1 MD03G1038400.v1.1 MD03G1038600.v1.1 MD03G1038900.v1.1 MD03G1039000.v1.1 MD03G1039100.v1.1 MD03G1188500.v1.1 MD10G1233100.v1.1 MD10G1233300.v1.1 MD10G1341200.v1.1 MD11G1039200.v1.1 MD11G1039300.v1.1 MD11G1204400.v1.1 MD11G1204600.v1.1
prunus_persica Prupe.2G123900_v2.0.a1 Prupe.4G001900_v2.0.a1 Prupe.4G234700_v2.0.a1 Prupe.4G234800_v2.0.a1 Prupe.6G025900_v2.0.a1 Prupe.6G030200_v2.0.a1 Prupe.6G030300_v2.0.a1 Prupe.6G030400_v2.0.a1 Prupe.6G030600_v2.0.a1 Prupe.6G030900_v2.0.a1 Prupe.6G031000_v2.0.a1 Prupe.6G031100_v2.0.a1 Prupe.6G031100_v2.0.a1
pyrus_communis pycom03g02940 pycom03g02950 pycom03g02980 pycom03g02990 pycom03g03010 pycom11g03310 pycom11g03320
rosa_chinensis RchiOBHm_Chr3g0484311 RchiOBHm_Chr5g0000231 RchiOBHm_Chr5g0042661 RchiOBHm_Chr5g0042671 RchiOBHm_Chr5g0075281 RchiOBHm_Chr5g0075291 RchiOBHm_Chr5g0075321 RchiOBHm_Chr5g0075331
rosa_laevigata RLG00000034149 RLG00000036545 RLG00000036546 RLG00000036547 RLG00000036548 RLG00000036549 RLG00000036550
rosa_multiflora Rmu_sc0000295.1_g000011 Rmu_sc0000770.1_g000041 Rmu_sc0000770.1_g000049 Rmu_sc0002564.1_g000002 Rmu_sc0002564.1_g000003 Rmu_sc0002564.1_g000016
rosa_roxburghii Rroxscaffold_1G00006200 Rroxscaffold_1G00006210 Rroxscaffold_1G00006220 Rroxscaffold_1G00006250 Rroxscaffold_1G00006270 Rroxscaffold_1G00037900 Rroxscaffold_1G00037980 Rroxscaffold_6G00397790
rosa_rugosa Rorug03G0210600 Rorug05G0203800 Rorug05G0203900 Rorug05G0438100 Rorug05G0438200 Rorug05G0438700 Rorug05G0438900 Rorug05G0438900
rosa_samantha Rh3AG259700 Rh3AG259800 Rh3BG296300 Rh3DG289900 Rh5AG001600 Rh5AG288900 Rh5AG289000 Rh5AG289200 Rh5AG494800 Rh5AG495000 Rh5AG495200 Rh5AG495300 Rh5BG293000 Rh5BG293100 Rh5BG293300 Rh5BG516400 Rh5BG516500 Rh5BG516900 Rh5BG517000 Rh5CG001900 Rh5CG325700 Rh5CG325900 Rh5CG326000 Rh5CG540200 Rh5CG540300 Rh5CG540500 Rh5CG540600 Rh5DG001900 Rh5DG302900 Rh5DG303000 Rh5DG303200 Rh5DG529100 Rh5DG529300 Rh5DG529400 Rh5DG532500
rosa_wichuraiana Rw3G023420 Rw3G023430 Rw5G000210 Rw5G026800 Rw5G045910 Rw5G045920 Rw5G045930 Rw5G045940 Rw5G045950

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 2 cut(s) 162, 175
AdeI CACNNNGTG 1 cut(s) 26
AjnI CCWGG 1 cut(s) 22
AluBI AGCT 1 cut(s) 127
AluI AGCT 1 cut(s) 127
AlwI GGATC 2 cut(s) 162, 175
AlwNI CAGNNNCTG 1 cut(s) 17
ApeKI GCWGC 1 cut(s) 11
ArsI GACNNNNNNTTYG 2 cut(s) 97, 129
AsuHPI GGTGA 2 cut(s) 62, 85
BamHI GGATCC 1 cut(s) 167
BbvI GCAGC 1 cut(s) 23
BccI CCATC 1 cut(s) 77
BciT130I CCWGG 1 cut(s) 24
BfaI CTAG 1 cut(s) 108
BisI GCNGC 1 cut(s) 12
BlsI GCNGC 1 cut(s) 13
Bme1390I CCNGG 1 cut(s) 24
BmiI GGNNCC 1 cut(s) 169
BmrFI CCNGG 1 cut(s) 24
BseBI CCWGG 1 cut(s) 24
BseGI GGATG 1 cut(s) 88
BseXI GCAGC 1 cut(s) 23
Bsp143I GATC 2 cut(s) 61, 167
BspLI GGNNCC 1 cut(s) 169
BspPI GGATC 2 cut(s) 162, 175
BssMI GATC 2 cut(s) 61, 167
Bst2UI CCWGG 1 cut(s) 24
BstAPI GCANNNNNTGC 1 cut(s) 17
BstF5I GGATG 1 cut(s) 88
BstKTI GATC 2 cut(s) 64, 170
BstMBI GATC 2 cut(s) 61, 167
BstMWI GCNNNNNNNGC 1 cut(s) 17
BstNI CCWGG 1 cut(s) 24
BstSCI CCNGG 1 cut(s) 22
BstV1I GCAGC 1 cut(s) 23
BstX2I RGATCY 1 cut(s) 167
BstYI RGATCY 1 cut(s) 167
BtsCI GGATG 1 cut(s) 88
CaiI CAGNNNCTG 1 cut(s) 17
CsiI ACCWGGT 1 cut(s) 22
CviAII CATG 1 cut(s) 65
CviJI RGCY 3 cut(s) 113, 127, 132
CviKI_1 RGCY 3 cut(s) 113, 127, 132
DpnI GATC 2 cut(s) 63, 169
DpnII GATC 2 cut(s) 61, 167
DraIII CACNNNGTG 1 cut(s) 26
EcoRII CCWGG 1 cut(s) 22
FaeI CATG 1 cut(s) 68
FaiI YATR 1 cut(s) 66
FatI CATG 1 cut(s) 64
Fnu4HI GCNGC 1 cut(s) 12
FokI GGATG 1 cut(s) 95
Fsp4HI GCNGC 1 cut(s) 12
FspBI CTAG 1 cut(s) 108
GluI GCNGC 1 cut(s) 12
Hin1II CATG 1 cut(s) 68
HindIII AAGCTT 1 cut(s) 125
HinfI GANTC 1 cut(s) 92
HphI GGTGA 2 cut(s) 62, 85
Hpy166II GTNNAC 2 cut(s) 31, 53
Hpy8I GTNNAC 2 cut(s) 31, 53
HpyCH4V TGCA 2 cut(s) 11, 20
HpyF10VI GCNNNNNNNGC 1 cut(s) 17
Hsp92II CATG 1 cut(s) 68
Kzo9I GATC 2 cut(s) 61, 167
LpnPI CCDG 2 cut(s) 9, 36
Lsp1109I GCAGC 1 cut(s) 23
MabI ACCWGGT 1 cut(s) 22
MaeI CTAG 1 cut(s) 108
MalI GATC 2 cut(s) 63, 169
MboI GATC 2 cut(s) 61, 167
MboII GAAGA 2 cut(s) 16, 133
MflI RGATCY 1 cut(s) 167
MlyI GAGTC 1 cut(s) 86
MnlI CCTC 2 cut(s) 64, 111
MspR9I CCNGG 1 cut(s) 24
MvaI CCWGG 1 cut(s) 24
MwoI GCNNNNNNNGC 1 cut(s) 17
NdeII GATC 2 cut(s) 61, 167
NlaIII CATG 1 cut(s) 68
NlaIV GGNNCC 1 cut(s) 169
PkrI GCNGC 1 cut(s) 13
PleI GAGTC 1 cut(s) 86
PpsI GAGTC 1 cut(s) 86
Psp6I CCWGG 1 cut(s) 22
PspGI CCWGG 1 cut(s) 22
PspN4I GGNNCC 1 cut(s) 169
PstNI CAGNNNCTG 1 cut(s) 17
PsuI RGATCY 1 cut(s) 167
SatI GCNGC 1 cut(s) 12
Sau3AI GATC 2 cut(s) 61, 167
SchI GAGTC 1 cut(s) 86
ScrFI CCNGG 1 cut(s) 24
SetI ASST 5 cut(s) 25, 52, 75, 129, 153
SexAI ACCWGGT 1 cut(s) 22
SspMI CTAG 1 cut(s) 108
StyD4I CCNGG 1 cut(s) 22
TseI GCWGC 1 cut(s) 11
TspDTI ATGAA 1 cut(s) 17
XspI CTAG 1 cut(s) 108
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.