pycom11g03320

transposition, RNA-mediated

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr11
OG0000276
Physical Location & Seq
Forward (+)
2599123 .. 2599770
648 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom11g03320.2

Sequence Viewer

Length: 339 bp
ATGAAGCAAAAGATAGTCATGAAGGTGCAGCTGAGCTCCGAGAAGTGCAGAACCAAGGCCTTGAAGATTGCTGCAGTTGCCAAAGGTGTGAGCACAGTGTCCATAGAAGCAGAGAAAGAGCATGTGGTGGTGATCGGAGACGGAGTTGATGCCGTTGACTTGGCTAAATCATTGAAGAAGAAGCTTGGCTCTGGCACCATAGTAAGTGTTGAAGAAGTGAAAAAACCGGAAGAAAAACCAGCTGAGCTGCCTGAGCCAATTCAGTGGGCATCAAGCTATATTCACTATCCACAGTATCCAACTGCGCAATACTACTATGATGGATTTTACAGATGGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
HMA

Protein Analysis

113

Amino Acids

12.53

Weight (kDa)

8.89

Isoelectric Point (pI)

39.74

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000276)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G05030 AT4G05030
fragaria_vesca FvH4_3g24080 FvH4_3g24080 FvH4_3g24100 FvH4_3g24100 FvH4_3g42050 FvH4_3g42060 FvH4_3g42070 FvH4_3g42071 FvH4_3g42080 FvH4_3g42090 FvH4_3g42100 FvH4_3g42110
malus_domestica MD03G1038100.v1.1 MD03G1038400.v1.1 MD03G1038600.v1.1 MD03G1038900.v1.1 MD03G1039000.v1.1 MD03G1039100.v1.1 MD03G1188500.v1.1 MD10G1233100.v1.1 MD10G1233300.v1.1 MD10G1341200.v1.1 MD11G1039200.v1.1 MD11G1039300.v1.1 MD11G1204400.v1.1 MD11G1204600.v1.1
prunus_persica Prupe.2G123900_v2.0.a1 Prupe.4G001900_v2.0.a1 Prupe.4G234700_v2.0.a1 Prupe.4G234800_v2.0.a1 Prupe.6G025900_v2.0.a1 Prupe.6G030200_v2.0.a1 Prupe.6G030300_v2.0.a1 Prupe.6G030400_v2.0.a1 Prupe.6G030600_v2.0.a1 Prupe.6G030900_v2.0.a1 Prupe.6G031000_v2.0.a1 Prupe.6G031100_v2.0.a1 Prupe.6G031100_v2.0.a1
pyrus_communis pycom03g02940 pycom03g02950 pycom03g02980 pycom03g02990 pycom03g03010 pycom11g03310 pycom11g03320
rosa_chinensis RchiOBHm_Chr3g0484311 RchiOBHm_Chr5g0000231 RchiOBHm_Chr5g0042661 RchiOBHm_Chr5g0042671 RchiOBHm_Chr5g0075281 RchiOBHm_Chr5g0075291 RchiOBHm_Chr5g0075321 RchiOBHm_Chr5g0075331
rosa_laevigata RLG00000034149 RLG00000036545 RLG00000036546 RLG00000036547 RLG00000036548 RLG00000036549 RLG00000036550
rosa_multiflora Rmu_sc0000295.1_g000011 Rmu_sc0000770.1_g000041 Rmu_sc0000770.1_g000049 Rmu_sc0002564.1_g000002 Rmu_sc0002564.1_g000003 Rmu_sc0002564.1_g000016
rosa_roxburghii Rroxscaffold_1G00006200 Rroxscaffold_1G00006210 Rroxscaffold_1G00006220 Rroxscaffold_1G00006250 Rroxscaffold_1G00006270 Rroxscaffold_1G00037900 Rroxscaffold_1G00037980 Rroxscaffold_6G00397790
rosa_rugosa Rorug03G0210600 Rorug05G0203800 Rorug05G0203900 Rorug05G0438100 Rorug05G0438200 Rorug05G0438700 Rorug05G0438900 Rorug05G0438900
rosa_samantha Rh3AG259700 Rh3AG259800 Rh3BG296300 Rh3DG289900 Rh5AG001600 Rh5AG288900 Rh5AG289000 Rh5AG289200 Rh5AG494800 Rh5AG495000 Rh5AG495200 Rh5AG495300 Rh5BG293000 Rh5BG293100 Rh5BG293300 Rh5BG516400 Rh5BG516500 Rh5BG516900 Rh5BG517000 Rh5CG001900 Rh5CG325700 Rh5CG325900 Rh5CG326000 Rh5CG540200 Rh5CG540300 Rh5CG540500 Rh5CG540600 Rh5DG001900 Rh5DG302900 Rh5DG303000 Rh5DG303200 Rh5DG529100 Rh5DG529300 Rh5DG529400 Rh5DG532500
rosa_wichuraiana Rw3G023420 Rw3G023430 Rw5G000210 Rw5G026800 Rw5G045910 Rw5G045920 Rw5G045930 Rw5G045940 Rw5G045950

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 306
AccB1I GGYRCC 1 cut(s) 194
AgsI TTSAA 3 cut(s) 64, 175, 212
AluBI AGCT 6 cut(s) 31, 36, 184, 242, 247, 276
AluI AGCT 6 cut(s) 31, 36, 184, 242, 247, 276
Alw21I GWGCWC 2 cut(s) 38, 95
Alw26I GTCTC 1 cut(s) 132
AoxI GGCC 1 cut(s) 57
ApeKI GCWGC 3 cut(s) 28, 71, 247
AspLEI GCGC 1 cut(s) 307
AsuHPI GGTGA 1 cut(s) 142
BanI GGYRCC 1 cut(s) 194
BanII GRGCYC 1 cut(s) 38
Bbv12I GWGCWC 2 cut(s) 38, 95
BbvI GCAGC 3 cut(s) 40, 58, 234
BccI CCATC 2 cut(s) 314, 327
BceAI ACGGC 1 cut(s) 137
BciVI GTATCC 1 cut(s) 306
BcoDI GTCTC 1 cut(s) 132
BfmI CTRYAG 1 cut(s) 72
BfuI GTATCC 1 cut(s) 306
BisI GCNGC 3 cut(s) 29, 72, 248
BlpI GCTNAGC 2 cut(s) 32, 243
BlsI GCNGC 3 cut(s) 30, 73, 249
BmiI GGNNCC 1 cut(s) 196
BmsI GCATC 2 cut(s) 139, 278
Bpu10I CCTNAGC 1 cut(s) 252
Bpu1102I GCTNAGC 2 cut(s) 32, 243
BsaJI CCNNGG 1 cut(s) 54
BsaWI WCCGGW 1 cut(s) 226
BsaXI ACNNNNNCTCC 2 cut(s) 129, 159
BseDI CCNNGG 1 cut(s) 54
BseMII CTCAG 3 cut(s) 23, 234, 243
BseXI GCAGC 3 cut(s) 40, 58, 234
BsgI GTGCAG 2 cut(s) 47, 67
BshFI GGCC 1 cut(s) 59
BshNI GGYRCC 1 cut(s) 194
BsiHKAI GWGCWC 2 cut(s) 38, 95
BsiSI CCGG 1 cut(s) 227
BsmAI GTCTC 1 cut(s) 132
BsmBI CGTCTC 1 cut(s) 132
BsnI GGCC 1 cut(s) 59
Bsp1286I GDGCHC 2 cut(s) 38, 95
Bsp143I GATC 1 cut(s) 132
Bsp1720I GCTNAGC 2 cut(s) 32, 243
BspANI GGCC 1 cut(s) 59
BspCNI CTCAG 3 cut(s) 24, 235, 244
BspHI TCATGA 1 cut(s) 18
BspLI GGNNCC 1 cut(s) 196
BspMAI CTGCAG 1 cut(s) 76
BspT107I GGYRCC 1 cut(s) 194
BssECI CCNNGG 1 cut(s) 54
BssMI GATC 1 cut(s) 132
BssT1I CCWWGG 1 cut(s) 54
Bst4CI ACNGT 2 cut(s) 97, 294
BstDEI CTNAG 3 cut(s) 32, 243, 252
BstHHI GCGC 1 cut(s) 307
BstKTI GATC 1 cut(s) 135
BstMAI GTCTC 1 cut(s) 132
BstMBI GATC 1 cut(s) 132
BstMWI GCNNNNNNNGC 2 cut(s) 77, 253
BstNSI RCATGY 1 cut(s) 125
BstSFI CTRYAG 1 cut(s) 72
BstV1I GCAGC 3 cut(s) 40, 58, 234
BstXI CCANNNNNNTGG 1 cut(s) 264
BsuI GTATCC 1 cut(s) 306
BsuRI GGCC 1 cut(s) 59
BtsIMutI CAGTG 2 cut(s) 102, 269
CciI TCATGA 1 cut(s) 18
CfoI GCGC 1 cut(s) 307
CviAII CATG 2 cut(s) 19, 122
DdeI CTNAG 3 cut(s) 32, 243, 252
DpnI GATC 1 cut(s) 134
DpnII GATC 1 cut(s) 132
Ecl136II GAGCTC 1 cut(s) 36
Eco130I CCWWGG 1 cut(s) 54
Eco147I AGGCCT 1 cut(s) 59
Eco24I GRGCYC 1 cut(s) 38
Eco53kI GAGCTC 1 cut(s) 36
EcoICRI GAGCTC 1 cut(s) 36
EcoT14I CCWWGG 1 cut(s) 54
EcoT38I GRGCYC 1 cut(s) 38
ErhI CCWWGG 1 cut(s) 54
Esp3I CGTCTC 1 cut(s) 132
FaeI CATG 2 cut(s) 22, 125
FaiI YATR 6 cut(s) 20, 104, 123, 200, 279, 318
FatI CATG 2 cut(s) 18, 121
Fnu4HI GCNGC 3 cut(s) 29, 72, 248
FriOI GRGCYC 1 cut(s) 38
Fsp4HI GCNGC 3 cut(s) 29, 72, 248
FspI TGCGCA 1 cut(s) 306
GlaI GCGC 1 cut(s) 306
GluI GCNGC 3 cut(s) 29, 72, 248
HaeIII GGCC 1 cut(s) 59
HapII CCGG 1 cut(s) 227
HhaI GCGC 1 cut(s) 307
Hin1II CATG 2 cut(s) 22, 125
Hin6I GCGC 1 cut(s) 305
HinP1I GCGC 1 cut(s) 305
HincII GTYRAC 1 cut(s) 157
HindII GTYRAC 1 cut(s) 157
HindIII AAGCTT 1 cut(s) 182
HpaII CCGG 1 cut(s) 227
HphI GGTGA 1 cut(s) 142
Hpy166II GTNNAC 1 cut(s) 157
Hpy188I TCNGA 2 cut(s) 40, 137
Hpy188III TCNNGA 1 cut(s) 19
Hpy8I GTNNAC 1 cut(s) 157
HpyAV CCTTC 1 cut(s) 16
HpyCH4III ACNGT 2 cut(s) 97, 294
HpyCH4V TGCA 3 cut(s) 28, 48, 74
HpyF10VI GCNNNNNNNGC 2 cut(s) 77, 253
HpyF3I CTNAG 3 cut(s) 32, 243, 252
Hsp92II CATG 2 cut(s) 22, 125
HspAI GCGC 1 cut(s) 305
Kzo9I GATC 1 cut(s) 132
LmnI GCTCC 1 cut(s) 41
LpnPI CCDG 4 cut(s) 177, 240, 252, 264
Lsp1109I GCAGC 3 cut(s) 40, 58, 234
LweI GCATC 2 cut(s) 139, 278
MalI GATC 1 cut(s) 134
MboI GATC 1 cut(s) 132
MboII GAAGA 5 cut(s) 76, 187, 190, 224, 242
MhlI GDGCHC 2 cut(s) 38, 95
MluCI AATT 1 cut(s) 258
MmeI TCCRAC 1 cut(s) 323
MslI CAYNNNNRTG 1 cut(s) 23
MspA1I CMGCKG 2 cut(s) 31, 242
MspI CCGG 1 cut(s) 227
MwoI GCNNNNNNNGC 2 cut(s) 77, 253
NdeII GATC 1 cut(s) 132
NlaIII CATG 2 cut(s) 22, 125
NlaIV GGNNCC 1 cut(s) 196
NsbI TGCGCA 1 cut(s) 306
NspI RCATGY 1 cut(s) 125
PagI TCATGA 1 cut(s) 18
PceI AGGCCT 1 cut(s) 59
PkrI GCNGC 3 cut(s) 30, 73, 249
Psp124BI GAGCTC 1 cut(s) 38
PspN4I GGNNCC 1 cut(s) 196
PstI CTGCAG 1 cut(s) 76
PvuII CAGCTG 2 cut(s) 31, 242
RseI CAYNNNNRTG 1 cut(s) 23
SacI GAGCTC 1 cut(s) 38
SatI GCNGC 3 cut(s) 29, 72, 248
Sau3AI GATC 1 cut(s) 132
SduI GDGCHC 2 cut(s) 38, 95
SetI ASST 8 cut(s) 27, 33, 38, 88, 186, 244, 249, 278
SfaNI GCATC 2 cut(s) 139, 278
SfcI CTRYAG 1 cut(s) 72
SmiMI CAYNNNNRTG 1 cut(s) 23
Sse9I AATT 1 cut(s) 258
SseBI AGGCCT 1 cut(s) 59
SstI GAGCTC 1 cut(s) 38
StuI AGGCCT 1 cut(s) 59
StyI CCWWGG 1 cut(s) 54
TaaI ACNGT 2 cut(s) 97, 294
TasI AATT 1 cut(s) 258
TscAI CASTG 2 cut(s) 102, 269
TseI GCWGC 3 cut(s) 28, 71, 247
TspDTI ATGAA 2 cut(s) 17, 35
TspGWI ACGGA 1 cut(s) 156
TspRI CASTG 2 cut(s) 102, 269
XceI RCATGY 1 cut(s) 125
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.