RLG00000036548

transposition, RNA-mediated

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr7
OG0000276
Physical Location & Seq
Reverse (-)
81810860 .. 81822191
11332 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000036548

Sequence Viewer

Length: 360 bp
ATGACGCAAAAGATACTTGTGAAGTTGCACGTTCATTGCGACAAATGCAGAACCAAGGCTTTGAAGATTGCAGCAACTGCACCTGGCGTGAAACAAGTGTCGATAGAAGCGGAGAAAAATCAGGTGGAGGTGATCGGGGAGAGGATTGACACCGTGACCTTGACTATGTCGATAAGGAAGAAGGTTGGGCATGCAGACATCGTAAGTGTTGAAGAAGTGAAGGAGGAGAAAAAGCCTTCTGATGAGCCAATTCCAAATGCTTGGACAACAAGCTACTATTATGTTCCCTGCCAGCAATATCCCAATCCCATGCACTATCAAGTGGTTCATGAACAACCAACCAATTGCTCCGTTATGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
HMA

Protein Analysis

120

Amino Acids

13.48

Weight (kDa)

7.69

Isoelectric Point (pI)

31.36

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000276)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G05030 AT4G05030
fragaria_vesca FvH4_3g24080 FvH4_3g24080 FvH4_3g24100 FvH4_3g24100 FvH4_3g42050 FvH4_3g42060 FvH4_3g42070 FvH4_3g42071 FvH4_3g42080 FvH4_3g42090 FvH4_3g42100 FvH4_3g42110
malus_domestica MD03G1038100.v1.1 MD03G1038400.v1.1 MD03G1038600.v1.1 MD03G1038900.v1.1 MD03G1039000.v1.1 MD03G1039100.v1.1 MD03G1188500.v1.1 MD10G1233100.v1.1 MD10G1233300.v1.1 MD10G1341200.v1.1 MD11G1039200.v1.1 MD11G1039300.v1.1 MD11G1204400.v1.1 MD11G1204600.v1.1
prunus_persica Prupe.2G123900_v2.0.a1 Prupe.4G001900_v2.0.a1 Prupe.4G234700_v2.0.a1 Prupe.4G234800_v2.0.a1 Prupe.6G025900_v2.0.a1 Prupe.6G030200_v2.0.a1 Prupe.6G030300_v2.0.a1 Prupe.6G030400_v2.0.a1 Prupe.6G030600_v2.0.a1 Prupe.6G030900_v2.0.a1 Prupe.6G031000_v2.0.a1 Prupe.6G031100_v2.0.a1 Prupe.6G031100_v2.0.a1
pyrus_communis pycom03g02940 pycom03g02950 pycom03g02980 pycom03g02990 pycom03g03010 pycom11g03310 pycom11g03320
rosa_chinensis RchiOBHm_Chr3g0484311 RchiOBHm_Chr5g0000231 RchiOBHm_Chr5g0042661 RchiOBHm_Chr5g0042671 RchiOBHm_Chr5g0075281 RchiOBHm_Chr5g0075291 RchiOBHm_Chr5g0075321 RchiOBHm_Chr5g0075331
rosa_laevigata RLG00000034149 RLG00000036545 RLG00000036546 RLG00000036547 RLG00000036548 RLG00000036549 RLG00000036550
rosa_multiflora Rmu_sc0000295.1_g000011 Rmu_sc0000770.1_g000041 Rmu_sc0000770.1_g000049 Rmu_sc0002564.1_g000002 Rmu_sc0002564.1_g000003 Rmu_sc0002564.1_g000016
rosa_roxburghii Rroxscaffold_1G00006200 Rroxscaffold_1G00006210 Rroxscaffold_1G00006220 Rroxscaffold_1G00006250 Rroxscaffold_1G00006270 Rroxscaffold_1G00037900 Rroxscaffold_1G00037980 Rroxscaffold_6G00397790
rosa_rugosa Rorug03G0210600 Rorug05G0203800 Rorug05G0203900 Rorug05G0438100 Rorug05G0438200 Rorug05G0438700 Rorug05G0438900 Rorug05G0438900
rosa_samantha Rh3AG259700 Rh3AG259800 Rh3BG296300 Rh3DG289900 Rh5AG001600 Rh5AG288900 Rh5AG289000 Rh5AG289200 Rh5AG494800 Rh5AG495000 Rh5AG495200 Rh5AG495300 Rh5BG293000 Rh5BG293100 Rh5BG293300 Rh5BG516400 Rh5BG516500 Rh5BG516900 Rh5BG517000 Rh5CG001900 Rh5CG325700 Rh5CG325900 Rh5CG326000 Rh5CG540200 Rh5CG540300 Rh5CG540500 Rh5CG540600 Rh5DG001900 Rh5DG302900 Rh5DG303000 Rh5DG303200 Rh5DG529100 Rh5DG529300 Rh5DG529400 Rh5DG532500
rosa_wichuraiana Rw3G023420 Rw3G023430 Rw5G000210 Rw5G026800 Rw5G045910 Rw5G045920 Rw5G045930 Rw5G045940 Rw5G045950

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 110
AgsI TTSAA 2 cut(s) 64, 212
AjnI CCWGG 1 cut(s) 82
AluBI AGCT 1 cut(s) 273
AluI AGCT 1 cut(s) 273
AlwNI CAGNNNCTG 1 cut(s) 77
ApeKI GCWGC 1 cut(s) 71
AsuHPI GGTGA 1 cut(s) 142
BbvI GCAGC 1 cut(s) 83
BciT130I CCWGG 1 cut(s) 84
BisI GCNGC 1 cut(s) 72
BlsI GCNGC 1 cut(s) 73
Bme1390I CCNGG 1 cut(s) 84
BmrFI CCNGG 1 cut(s) 84
BsaJI CCNNGG 1 cut(s) 54
Bse3DI GCAATG 1 cut(s) 34
BseBI CCWGG 1 cut(s) 84
BseDI CCNNGG 1 cut(s) 54
BseMI GCAATG 1 cut(s) 34
BseRI GAGGAG 1 cut(s) 239
BseXI GCAGC 1 cut(s) 83
BsgI GTGCAG 1 cut(s) 63
Bsp143I GATC 1 cut(s) 132
BspACI CCGC 1 cut(s) 110
BspHI TCATGA 1 cut(s) 328
BsrDI GCAATG 1 cut(s) 34
BssECI CCNNGG 1 cut(s) 54
BssMI GATC 1 cut(s) 132
BssT1I CCWWGG 1 cut(s) 54
Bst2UI CCWGG 1 cut(s) 84
Bst4CI ACNGT 1 cut(s) 154
BstAPI GCANNNNNTGC 1 cut(s) 77
BstC8I GCNNGC 2 cut(s) 192, 293
BstKTI GATC 1 cut(s) 135
BstMBI GATC 1 cut(s) 132
BstMWI GCNNNNNNNGC 2 cut(s) 45, 77
BstNI CCWGG 1 cut(s) 84
BstNSI RCATGY 1 cut(s) 194
BstSCI CCNGG 1 cut(s) 82
BstV1I GCAGC 1 cut(s) 83
BstXI CCANNNNNNTGG 1 cut(s) 261
Cac8I GCNNGC 2 cut(s) 192, 293
CaiI CAGNNNCTG 1 cut(s) 77
CciI TCATGA 1 cut(s) 328
CseI GACGC 1 cut(s) 13
CviAII CATG 3 cut(s) 191, 310, 329
CviJI RGCY 4 cut(s) 59, 235, 247, 273
CviKI_1 RGCY 4 cut(s) 59, 235, 247, 273
DpnI GATC 1 cut(s) 134
DpnII GATC 1 cut(s) 132
Eco130I CCWWGG 1 cut(s) 54
EcoRII CCWGG 1 cut(s) 82
EcoT14I CCWWGG 1 cut(s) 54
ErhI CCWWGG 1 cut(s) 54
FaeI CATG 3 cut(s) 194, 313, 332
FaiI YATR 6 cut(s) 167, 192, 282, 311, 330, 356
FatI CATG 3 cut(s) 190, 309, 328
Fnu4HI GCNGC 1 cut(s) 72
Fsp4HI GCNGC 1 cut(s) 72
GluI GCNGC 1 cut(s) 72
HgaI GACGC 1 cut(s) 13
Hin1II CATG 3 cut(s) 194, 313, 332
HphI GGTGA 1 cut(s) 142
Hpy188I TCNGA 1 cut(s) 241
Hpy188III TCNNGA 1 cut(s) 329
HpyAV CCTTC 3 cut(s) 175, 214, 246
HpyCH4III ACNGT 1 cut(s) 154
HpyCH4IV ACGT 1 cut(s) 30
HpyCH4V TGCA 6 cut(s) 28, 48, 71, 80, 194, 313
HpyF10VI GCNNNNNNNGC 2 cut(s) 45, 77
HpySE526I ACGT 1 cut(s) 30
Hsp92II CATG 3 cut(s) 194, 313, 332
Kzo9I GATC 1 cut(s) 132
LmnI GCTCC 1 cut(s) 353
LpnPI CCDG 5 cut(s) 69, 96, 107, 301, 305
Lsp1109I GCAGC 1 cut(s) 83
MaeII ACGT 1 cut(s) 30
MaeIII GTNAC 1 cut(s) 154
MalI GATC 1 cut(s) 134
MboI GATC 1 cut(s) 132
MboII GAAGA 3 cut(s) 76, 190, 224
MfeI CAATTG 1 cut(s) 343
MluCI AATT 2 cut(s) 249, 343
MnlI CCTC 3 cut(s) 121, 135, 217
MspR9I CCNGG 1 cut(s) 84
MunI CAATTG 1 cut(s) 343
MvaI CCWGG 1 cut(s) 84
MwoI GCNNNNNNNGC 2 cut(s) 45, 77
NdeII GATC 1 cut(s) 132
NlaIII CATG 3 cut(s) 194, 313, 332
NmuCI GTSAC 1 cut(s) 154
NspI RCATGY 1 cut(s) 194
PaeI GCATGC 1 cut(s) 194
PagI TCATGA 1 cut(s) 328
PcsI WCGNNNNNNNCGW 1 cut(s) 36
PflFI GACNNNGTC 1 cut(s) 166
PkrI GCNGC 1 cut(s) 73
Psp6I CCWGG 1 cut(s) 82
PspGI CCWGG 1 cut(s) 82
PstNI CAGNNNCTG 1 cut(s) 77
PsyI GACNNNGTC 1 cut(s) 166
SatI GCNGC 1 cut(s) 72
Sau3AI GATC 1 cut(s) 132
ScrFI CCNGG 1 cut(s) 84
SetI ASST 7 cut(s) 33, 85, 126, 132, 161, 186, 275
SphI GCATGC 1 cut(s) 194
Sse9I AATT 2 cut(s) 249, 343
SsiI CCGC 1 cut(s) 110
StyD4I CCNGG 1 cut(s) 82
StyI CCWWGG 1 cut(s) 54
TaaI ACNGT 1 cut(s) 154
TaiI ACGT 1 cut(s) 33
TaqI TCGA 2 cut(s) 101, 170
TasI AATT 2 cut(s) 249, 343
TseFI GTSAC 1 cut(s) 154
TseI GCWGC 1 cut(s) 71
Tsp45I GTSAC 1 cut(s) 154
TspDTI ATGAA 3 cut(s) 23, 317, 345
TspGWI ACGGA 1 cut(s) 340
Tth111I GACNNNGTC 1 cut(s) 166
XceI RCATGY 1 cut(s) 194
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.