Rmu_sc0000770.1_g000041

transposition, RNA-mediated

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0000770.1
OG0000276
Physical Location & Seq
Forward (+)
219392 .. 220270
879 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0000770.1_g000041.1.cds

Sequence Viewer

Length: 372 bp
atgatcgtagctataacgcgcgattgtcaaaattctgtatactcttcggcctctaccgtgaagcaaaagatagttataaaggtgcaatttagctctgagaaacgcaaaactgaggctttcaagactgccgccggctttaaaggtgtgagcagtgtgtctatagaagcagacaaagaccaagttgttgcgatcggagttggaattgattcggtttgcttggccaaattgttgaggaagaaactcagctacgcccaaatagtaagtgttgaagaagtgaaacccgaagaaaagaagccaaaagttgaaactattccaattcaatggacatcaagctatgctcaatatcctgtgtgcgatgttttctactggtga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
HMA

Protein Analysis

123

Amino Acids

13.67

Weight (kDa)

9.12

Isoelectric Point (pI)

30.34

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000276)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G05030 AT4G05030
fragaria_vesca FvH4_3g24080 FvH4_3g24080 FvH4_3g24100 FvH4_3g24100 FvH4_3g42050 FvH4_3g42060 FvH4_3g42070 FvH4_3g42071 FvH4_3g42080 FvH4_3g42090 FvH4_3g42100 FvH4_3g42110
malus_domestica MD03G1038100.v1.1 MD03G1038400.v1.1 MD03G1038600.v1.1 MD03G1038900.v1.1 MD03G1039000.v1.1 MD03G1039100.v1.1 MD03G1188500.v1.1 MD10G1233100.v1.1 MD10G1233300.v1.1 MD10G1341200.v1.1 MD11G1039200.v1.1 MD11G1039300.v1.1 MD11G1204400.v1.1 MD11G1204600.v1.1
prunus_persica Prupe.2G123900_v2.0.a1 Prupe.4G001900_v2.0.a1 Prupe.4G234700_v2.0.a1 Prupe.4G234800_v2.0.a1 Prupe.6G025900_v2.0.a1 Prupe.6G030200_v2.0.a1 Prupe.6G030300_v2.0.a1 Prupe.6G030400_v2.0.a1 Prupe.6G030600_v2.0.a1 Prupe.6G030900_v2.0.a1 Prupe.6G031000_v2.0.a1 Prupe.6G031100_v2.0.a1 Prupe.6G031100_v2.0.a1
pyrus_communis pycom03g02940 pycom03g02950 pycom03g02980 pycom03g02990 pycom03g03010 pycom11g03310 pycom11g03320
rosa_chinensis RchiOBHm_Chr3g0484311 RchiOBHm_Chr5g0000231 RchiOBHm_Chr5g0042661 RchiOBHm_Chr5g0042671 RchiOBHm_Chr5g0075281 RchiOBHm_Chr5g0075291 RchiOBHm_Chr5g0075321 RchiOBHm_Chr5g0075331
rosa_laevigata RLG00000034149 RLG00000036545 RLG00000036546 RLG00000036547 RLG00000036548 RLG00000036549 RLG00000036550
rosa_multiflora Rmu_sc0000295.1_g000011 Rmu_sc0000770.1_g000041 Rmu_sc0000770.1_g000049 Rmu_sc0002564.1_g000002 Rmu_sc0002564.1_g000003 Rmu_sc0002564.1_g000016
rosa_roxburghii Rroxscaffold_1G00006200 Rroxscaffold_1G00006210 Rroxscaffold_1G00006220 Rroxscaffold_1G00006250 Rroxscaffold_1G00006270 Rroxscaffold_1G00037900 Rroxscaffold_1G00037980 Rroxscaffold_6G00397790
rosa_rugosa Rorug03G0210600 Rorug05G0203800 Rorug05G0203900 Rorug05G0438100 Rorug05G0438200 Rorug05G0438700 Rorug05G0438900 Rorug05G0438900
rosa_samantha Rh3AG259700 Rh3AG259800 Rh3BG296300 Rh3DG289900 Rh5AG001600 Rh5AG288900 Rh5AG289000 Rh5AG289200 Rh5AG494800 Rh5AG495000 Rh5AG495200 Rh5AG495300 Rh5BG293000 Rh5BG293100 Rh5BG293300 Rh5BG516400 Rh5BG516500 Rh5BG516900 Rh5BG517000 Rh5CG001900 Rh5CG325700 Rh5CG325900 Rh5CG326000 Rh5CG540200 Rh5CG540300 Rh5CG540500 Rh5CG540600 Rh5DG001900 Rh5DG302900 Rh5DG303000 Rh5DG303200 Rh5DG529100 Rh5DG529300 Rh5DG529400 Rh5DG532500
rosa_wichuraiana Rw3G023420 Rw3G023430 Rw5G000210 Rw5G026800 Rw5G045910 Rw5G045920 Rw5G045930 Rw5G045940 Rw5G045950

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 77
AccI GTMKAC 1 cut(s) 39
AccII CGCG 2 cut(s) 19, 21
AciI CCGC 1 cut(s) 129
AcoI YGGCCR 1 cut(s) 219
AcsI RAATTY 1 cut(s) 31
AgsI TTSAA 4 cut(s) 121, 269, 305, 320
AluBI AGCT 4 cut(s) 11, 93, 246, 333
AluI AGCT 4 cut(s) 11, 93, 246, 333
AoxI GGCC 2 cut(s) 48, 219
ApoI RAATTY 1 cut(s) 31
Asp700I GAANNNNTTC 2 cut(s) 205, 309
AspLEI GCGC 1 cut(s) 21
BalI TGGCCA 1 cut(s) 221
BfmI CTRYAG 1 cut(s) 159
BisI GCNGC 1 cut(s) 129
BlsI GCNGC 1 cut(s) 130
Bse118I RCCGGY 1 cut(s) 131
Bse1I ACTGG 1 cut(s) 371
BseMII CTCAG 3 cut(s) 87, 102, 256
BseNI ACTGG 1 cut(s) 371
Bsh1236I CGCG 2 cut(s) 19, 21
Bsh1285I CGRYCG 1 cut(s) 192
BshFI GGCC 2 cut(s) 50, 221
BsiEI CGRYCG 1 cut(s) 192
BsiSI CCGG 1 cut(s) 132
BsnI GGCC 2 cut(s) 50, 221
Bsp143I GATC 2 cut(s) 3, 189
BspACI CCGC 1 cut(s) 129
BspANI GGCC 2 cut(s) 50, 221
BspCNI CTCAG 3 cut(s) 88, 103, 255
BspFNI CGCG 2 cut(s) 19, 21
BsrFI RCCGGY 1 cut(s) 131
BsrI ACTGG 1 cut(s) 371
BssAI RCCGGY 1 cut(s) 131
BssMI GATC 2 cut(s) 3, 189
BssNAI GTATAC 1 cut(s) 40
Bst1107I GTATAC 1 cut(s) 40
Bst4CI ACNGT 1 cut(s) 58
Bst6I CTCTTC 1 cut(s) 49
BstC8I GCNNGC 1 cut(s) 133
BstDEI CTNAG 3 cut(s) 96, 111, 242
BstFNI CGCG 2 cut(s) 19, 21
BstHHI GCGC 1 cut(s) 21
BstKTI GATC 2 cut(s) 6, 192
BstMBI GATC 2 cut(s) 3, 189
BstMCI CGRYCG 1 cut(s) 192
BstSFI CTRYAG 1 cut(s) 159
BstUI CGCG 2 cut(s) 19, 21
BstXI CCANNNNNNTGG 1 cut(s) 321
BstZ17I GTATAC 1 cut(s) 40
BsuRI GGCC 2 cut(s) 50, 221
BtsI GCAGTG 1 cut(s) 157
BtsIMutI CAGTG 1 cut(s) 157
Cac8I GCNNGC 1 cut(s) 133
CfoI GCGC 1 cut(s) 21
Cfr10I RCCGGY 1 cut(s) 131
CviJI RGCY 9 cut(s) 11, 50, 93, 116, 135, 221, 246, 295, 333
CviKI_1 RGCY 9 cut(s) 11, 50, 93, 116, 135, 221, 246, 295, 333
DdeI CTNAG 3 cut(s) 96, 111, 242
DpnI GATC 2 cut(s) 5, 191
DpnII GATC 2 cut(s) 3, 189
DraI TTTAAA 1 cut(s) 139
EaeI YGGCCR 1 cut(s) 219
Eam1104I CTCTTC 1 cut(s) 49
EarI CTCTTC 1 cut(s) 49
FaiI YATR 5 cut(s) 14, 40, 77, 161, 336
FblI GTMKAC 1 cut(s) 39
Fnu4HI GCNGC 1 cut(s) 129
Fsp4HI GCNGC 1 cut(s) 129
GlaI GCGC 1 cut(s) 20
GluI GCNGC 1 cut(s) 129
HaeIII GGCC 2 cut(s) 50, 221
HapII CCGG 1 cut(s) 132
HhaI GCGC 1 cut(s) 21
Hin6I GCGC 1 cut(s) 19
HinP1I GCGC 1 cut(s) 19
HinfI GANTC 1 cut(s) 206
HpaII CCGG 1 cut(s) 132
Hpy166II GTNNAC 1 cut(s) 40
Hpy188I TCNGA 2 cut(s) 97, 194
Hpy188III TCNNGA 1 cut(s) 121
Hpy8I GTNNAC 1 cut(s) 40
HpyCH4III ACNGT 1 cut(s) 58
HpyCH4V TGCA 1 cut(s) 85
HpyF3I CTNAG 3 cut(s) 96, 111, 242
HspAI GCGC 1 cut(s) 19
KroI GCCGGC 1 cut(s) 131
KroNI GCCGGC 1 cut(s) 133
Kzo9I GATC 2 cut(s) 3, 189
LpnPI CCDG 3 cut(s) 145, 352, 360
MalI GATC 2 cut(s) 5, 191
MboI GATC 2 cut(s) 3, 189
MboII GAAGA 4 cut(s) 36, 247, 281, 296
MlsI TGGCCA 1 cut(s) 221
MluCI AATT 5 cut(s) 31, 86, 201, 224, 315
MluNI TGGCCA 1 cut(s) 221
MmeI TCCRAC 1 cut(s) 178
MnlI CCTC 3 cut(s) 61, 106, 225
Mox20I TGGCCA 1 cut(s) 221
MroNI GCCGGC 1 cut(s) 131
MroXI GAANNNNTTC 2 cut(s) 205, 309
MscI TGGCCA 1 cut(s) 221
MseI TTAA 1 cut(s) 138
Msp20I TGGCCA 1 cut(s) 221
MspI CCGG 1 cut(s) 132
MvnI CGCG 2 cut(s) 19, 21
NaeI GCCGGC 1 cut(s) 133
NdeII GATC 2 cut(s) 3, 189
NgoMIV GCCGGC 1 cut(s) 131
PdiI GCCGGC 1 cut(s) 133
PdmI GAANNNNTTC 2 cut(s) 205, 309
PfeI GAWTC 1 cut(s) 206
PkrI GCNGC 1 cut(s) 130
Ple19I CGATCG 1 cut(s) 192
PsiI TTATAA 1 cut(s) 77
PvuI CGATCG 1 cut(s) 192
SaqAI TTAA 1 cut(s) 138
SatI GCNGC 1 cut(s) 129
Sau3AI GATC 2 cut(s) 3, 189
SetI ASST 6 cut(s) 13, 84, 95, 145, 248, 335
SfcI CTRYAG 1 cut(s) 159
Sse9I AATT 5 cut(s) 31, 86, 201, 224, 315
SsiI CCGC 1 cut(s) 129
TaaI ACNGT 1 cut(s) 58
TasI AATT 5 cut(s) 31, 86, 201, 224, 315
TauI GCSGC 1 cut(s) 131
TfiI GAWTC 1 cut(s) 206
Tru1I TTAA 1 cut(s) 138
Tru9I TTAA 1 cut(s) 138
TscAI CASTG 1 cut(s) 157
TspRI CASTG 1 cut(s) 157
XapI RAATTY 1 cut(s) 31
XmiI GTMKAC 1 cut(s) 39
XmnI GAANNNNTTC 2 cut(s) 205, 309
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.