MD11G1204600.v1.1

seed storage protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr11
OG0000276
Physical Location & Seq
Reverse (-)
29866381 .. 29866865
485 bp
Loading structure...
UTR
Exon/CDS
Intron
MD11G1204600.v1.1.491

Sequence Viewer

Length: 255 bp
ATGTTTGAATTAATTCCGCAGCAAAAGATTGTCATTGAGGTGCAGATGAGAAGCAGAAGACGTCGTGCCAAGGCCATGAAGATAGCTGCTGTCGCTGATGGTGTTAATCCAGTGGCTTTCAATGAGGAAAAGAAAGACCAGATGGTAATAATTGGAGATGGAATTGATGCAGCTAGCGTAGCTCTCTCTTTGAGGAAGAAGGTTGGCCATGCTACCTTAGTGACCGTGGAAGAAATAGTACTGGAAGATATATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Cupin_1

Protein Analysis

85

Amino Acids

9.3

Weight (kDa)

8.09

Isoelectric Point (pI)

53.93

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000276)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G05030 AT4G05030
fragaria_vesca FvH4_3g24080 FvH4_3g24080 FvH4_3g24100 FvH4_3g24100 FvH4_3g42050 FvH4_3g42060 FvH4_3g42070 FvH4_3g42071 FvH4_3g42080 FvH4_3g42090 FvH4_3g42100 FvH4_3g42110
malus_domestica MD03G1038100.v1.1 MD03G1038400.v1.1 MD03G1038600.v1.1 MD03G1038900.v1.1 MD03G1039000.v1.1 MD03G1039100.v1.1 MD03G1188500.v1.1 MD10G1233100.v1.1 MD10G1233300.v1.1 MD10G1341200.v1.1 MD11G1039200.v1.1 MD11G1039300.v1.1 MD11G1204400.v1.1 MD11G1204600.v1.1
prunus_persica Prupe.2G123900_v2.0.a1 Prupe.4G001900_v2.0.a1 Prupe.4G234700_v2.0.a1 Prupe.4G234800_v2.0.a1 Prupe.6G025900_v2.0.a1 Prupe.6G030200_v2.0.a1 Prupe.6G030300_v2.0.a1 Prupe.6G030400_v2.0.a1 Prupe.6G030600_v2.0.a1 Prupe.6G030900_v2.0.a1 Prupe.6G031000_v2.0.a1 Prupe.6G031100_v2.0.a1 Prupe.6G031100_v2.0.a1
pyrus_communis pycom03g02940 pycom03g02950 pycom03g02980 pycom03g02990 pycom03g03010 pycom11g03310 pycom11g03320
rosa_chinensis RchiOBHm_Chr3g0484311 RchiOBHm_Chr5g0000231 RchiOBHm_Chr5g0042661 RchiOBHm_Chr5g0042671 RchiOBHm_Chr5g0075281 RchiOBHm_Chr5g0075291 RchiOBHm_Chr5g0075321 RchiOBHm_Chr5g0075331
rosa_laevigata RLG00000034149 RLG00000036545 RLG00000036546 RLG00000036547 RLG00000036548 RLG00000036549 RLG00000036550
rosa_multiflora Rmu_sc0000295.1_g000011 Rmu_sc0000770.1_g000041 Rmu_sc0000770.1_g000049 Rmu_sc0002564.1_g000002 Rmu_sc0002564.1_g000003 Rmu_sc0002564.1_g000016
rosa_roxburghii Rroxscaffold_1G00006200 Rroxscaffold_1G00006210 Rroxscaffold_1G00006220 Rroxscaffold_1G00006250 Rroxscaffold_1G00006270 Rroxscaffold_1G00037900 Rroxscaffold_1G00037980 Rroxscaffold_6G00397790
rosa_rugosa Rorug03G0210600 Rorug05G0203800 Rorug05G0203900 Rorug05G0438100 Rorug05G0438200 Rorug05G0438700 Rorug05G0438900 Rorug05G0438900
rosa_samantha Rh3AG259700 Rh3AG259800 Rh3BG296300 Rh3DG289900 Rh5AG001600 Rh5AG288900 Rh5AG289000 Rh5AG289200 Rh5AG494800 Rh5AG495000 Rh5AG495200 Rh5AG495300 Rh5BG293000 Rh5BG293100 Rh5BG293300 Rh5BG516400 Rh5BG516500 Rh5BG516900 Rh5BG517000 Rh5CG001900 Rh5CG325700 Rh5CG325900 Rh5CG326000 Rh5CG540200 Rh5CG540300 Rh5CG540500 Rh5CG540600 Rh5DG001900 Rh5DG302900 Rh5DG303000 Rh5DG303200 Rh5DG529100 Rh5DG529300 Rh5DG529400 Rh5DG532500
rosa_wichuraiana Rw3G023420 Rw3G023430 Rw5G000210 Rw5G026800 Rw5G045910 Rw5G045920 Rw5G045930 Rw5G045940 Rw5G045950

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 64
AciI CCGC 1 cut(s) 17
AcoI YGGCCR 1 cut(s) 205
AcyI GRCGYC 1 cut(s) 61
AfaI GTAC 1 cut(s) 240
AgsI TTSAA 2 cut(s) 8, 121
AluBI AGCT 3 cut(s) 86, 173, 182
AluI AGCT 3 cut(s) 86, 173, 182
AoxI GGCC 2 cut(s) 72, 205
ApeKI GCWGC 3 cut(s) 19, 86, 170
AseI ATTAAT 1 cut(s) 11
Asp700I GAANNNNTTC 1 cut(s) 12
AsuNHI GCTAGC 1 cut(s) 173
BalI TGGCCA 1 cut(s) 207
BarI GAAGNNNNNNTAC 2 cut(s) 222, 254
BbsI GAAGAC 1 cut(s) 64
BbvI GCAGC 3 cut(s) 31, 73, 182
BccI CCATC 3 cut(s) 92, 136, 152
BfaI CTAG 1 cut(s) 174
BisI GCNGC 3 cut(s) 20, 87, 171
BlsI GCNGC 3 cut(s) 21, 88, 172
BmcAI AGTACT 1 cut(s) 240
BmsI GCATC 1 cut(s) 157
BmtI GCTAGC 1 cut(s) 177
BpiI GAAGAC 1 cut(s) 64
BsaHI GRCGYC 1 cut(s) 61
BsaJI CCNNGG 2 cut(s) 69, 225
Bse1I ACTGG 2 cut(s) 110, 246
BseDI CCNNGG 2 cut(s) 69, 225
BseNI ACTGG 2 cut(s) 110, 246
BseXI GCAGC 3 cut(s) 31, 73, 182
BsgI GTGCAG 1 cut(s) 62
BshFI GGCC 2 cut(s) 74, 207
BsnI GGCC 2 cut(s) 74, 207
BspACI CCGC 1 cut(s) 17
BspANI GGCC 2 cut(s) 74, 207
BspOI GCTAGC 1 cut(s) 177
BsrI ACTGG 2 cut(s) 110, 246
BssECI CCNNGG 2 cut(s) 69, 225
BssNI GRCGYC 1 cut(s) 61
BssT1I CCWWGG 1 cut(s) 69
Bst4CI ACNGT 1 cut(s) 226
BstACI GRCGYC 1 cut(s) 61
BstC8I GCNNGC 1 cut(s) 175
BstDEI CTNAG 1 cut(s) 217
BstDSI CCRYGG 1 cut(s) 225
BstMWI GCNNNNNNNGC 2 cut(s) 92, 179
BstV1I GCAGC 3 cut(s) 31, 73, 182
BstV2I GAAGAC 1 cut(s) 64
BsuRI GGCC 2 cut(s) 74, 207
BtgI CCRYGG 1 cut(s) 225
BtsIMutI CAGTG 1 cut(s) 117
Cac8I GCNNGC 1 cut(s) 175
Csp6I GTAC 1 cut(s) 239
CviAII CATG 2 cut(s) 76, 209
CviJI RGCY 6 cut(s) 74, 86, 116, 173, 182, 207
CviKI_1 RGCY 6 cut(s) 74, 86, 116, 173, 182, 207
CviQI GTAC 1 cut(s) 239
DdeI CTNAG 1 cut(s) 217
EaeI YGGCCR 1 cut(s) 205
Eco130I CCWWGG 1 cut(s) 69
EcoT14I CCWWGG 1 cut(s) 69
ErhI CCWWGG 1 cut(s) 69
FaeI CATG 2 cut(s) 79, 212
FaiI YATR 4 cut(s) 77, 210, 251, 253
FatI CATG 2 cut(s) 75, 208
Fnu4HI GCNGC 3 cut(s) 20, 87, 171
Fsp4HI GCNGC 3 cut(s) 20, 87, 171
FspBI CTAG 1 cut(s) 174
GluI GCNGC 3 cut(s) 20, 87, 171
HaeIII GGCC 2 cut(s) 74, 207
Hin1I GRCGYC 1 cut(s) 61
Hin1II CATG 2 cut(s) 79, 212
Hpy99I CGWCG 1 cut(s) 66
HpyAV CCTTC 1 cut(s) 193
HpyCH4III ACNGT 1 cut(s) 226
HpyCH4IV ACGT 1 cut(s) 61
HpyCH4V TGCA 2 cut(s) 43, 170
HpyF10VI GCNNNNNNNGC 2 cut(s) 92, 179
HpyF3I CTNAG 1 cut(s) 217
HpySE526I ACGT 1 cut(s) 61
Hsp92I GRCGYC 1 cut(s) 61
Hsp92II CATG 2 cut(s) 79, 212
LpnPI CCDG 3 cut(s) 123, 152, 227
Lsp1109I GCAGC 3 cut(s) 31, 73, 182
LweI GCATC 1 cut(s) 157
MaeI CTAG 1 cut(s) 174
MaeII ACGT 1 cut(s) 61
MaeIII GTNAC 1 cut(s) 220
MboII GAAGA 4 cut(s) 69, 91, 208, 242
MlsI TGGCCA 1 cut(s) 207
MluCI AATT 4 cut(s) 8, 12, 150, 162
MluNI TGGCCA 1 cut(s) 207
MnlI CCTC 3 cut(s) 31, 118, 186
Mox20I TGGCCA 1 cut(s) 207
MroXI GAANNNNTTC 1 cut(s) 12
MscI TGGCCA 1 cut(s) 207
MseI TTAA 2 cut(s) 11, 105
MslI CAYNNNNRTG 1 cut(s) 38
Msp20I TGGCCA 1 cut(s) 207
MwoI GCNNNNNNNGC 2 cut(s) 92, 179
NheI GCTAGC 1 cut(s) 173
NlaIII CATG 2 cut(s) 79, 212
NmuCI GTSAC 1 cut(s) 220
PdmI GAANNNNTTC 1 cut(s) 12
PkrI GCNGC 3 cut(s) 21, 88, 172
PshBI ATTAAT 1 cut(s) 11
RsaI GTAC 1 cut(s) 240
RsaNI GTAC 1 cut(s) 239
RseI CAYNNNNRTG 1 cut(s) 38
SaqAI TTAA 2 cut(s) 11, 105
SatI GCNGC 3 cut(s) 20, 87, 171
ScaI AGTACT 1 cut(s) 240
SetI ASST 7 cut(s) 42, 64, 88, 175, 184, 204, 218
SfaNI GCATC 1 cut(s) 157
SgeI CNNG 8 cut(s) 77, 82, 88, 122, 151, 186, 221, 238
SmiMI CAYNNNNRTG 1 cut(s) 38
Sse9I AATT 4 cut(s) 8, 12, 150, 162
SsiI CCGC 1 cut(s) 17
SspMI CTAG 1 cut(s) 174
StyI CCWWGG 1 cut(s) 69
TaaI ACNGT 1 cut(s) 226
TaiI ACGT 1 cut(s) 64
TasI AATT 4 cut(s) 8, 12, 150, 162
TatI WGTACW 1 cut(s) 238
Tru1I TTAA 2 cut(s) 11, 105
Tru9I TTAA 2 cut(s) 11, 105
TscAI CASTG 1 cut(s) 117
TseFI GTSAC 1 cut(s) 220
TseI GCWGC 3 cut(s) 19, 86, 170
Tsp45I GTSAC 1 cut(s) 220
TspDTI ATGAA 1 cut(s) 92
TspRI CASTG 1 cut(s) 117
VspI ATTAAT 1 cut(s) 11
XmnI GAANNNNTTC 1 cut(s) 12
XspI CTAG 1 cut(s) 174
ZraI GACGTC 1 cut(s) 62
ZrmI AGTACT 1 cut(s) 240
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.