FvH4_3g42110

transposition, RNA-mediated

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb3
OG0000276
Physical Location & Seq
Reverse (-)
35191855 .. 35192808
954 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_3g42110.t1

Sequence Viewer

Length: 381 bp
ATGATGCAAAAGATACTTGTGAAGTTGCACATTCACTGCGACAAATGCAGAACCAAGGCTTTCAAGATTGCAGCAAACACACCAGGTGTGAATAGAGTGTCGATTGAAGGTGCAGACAGAGATCATCTGGAGGTGATTGGGAATGGAGTTGACTCGGTTTGCTTGACTAGGGCTTTAAGGAAGAAGCTCGGCTTCGCCAATATCATAAGTGTCGAACAAGTCGGAGAGTCCAGATGTAATTATTCCGAGGAAGAAAGGCCGACTGCGATTCAATATTGTGCTACAACATCAAGCTATAGTAGTCATTTTCAACATCCTCAGATAGGTTATCCAATGTACTATCATCATGAACCAACTCCTGATAACTGCTCTATTATGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
HMA

Protein Analysis

127

Amino Acids

14.2

Weight (kDa)

7.67

Isoelectric Point (pI)

35.84

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000276)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G05030 AT4G05030
fragaria_vesca FvH4_3g24080 FvH4_3g24080 FvH4_3g24100 FvH4_3g24100 FvH4_3g42050 FvH4_3g42060 FvH4_3g42070 FvH4_3g42071 FvH4_3g42080 FvH4_3g42090 FvH4_3g42100 FvH4_3g42110
malus_domestica MD03G1038100.v1.1 MD03G1038400.v1.1 MD03G1038600.v1.1 MD03G1038900.v1.1 MD03G1039000.v1.1 MD03G1039100.v1.1 MD03G1188500.v1.1 MD10G1233100.v1.1 MD10G1233300.v1.1 MD10G1341200.v1.1 MD11G1039200.v1.1 MD11G1039300.v1.1 MD11G1204400.v1.1 MD11G1204600.v1.1
prunus_persica Prupe.2G123900_v2.0.a1 Prupe.4G001900_v2.0.a1 Prupe.4G234700_v2.0.a1 Prupe.4G234800_v2.0.a1 Prupe.6G025900_v2.0.a1 Prupe.6G030200_v2.0.a1 Prupe.6G030300_v2.0.a1 Prupe.6G030400_v2.0.a1 Prupe.6G030600_v2.0.a1 Prupe.6G030900_v2.0.a1 Prupe.6G031000_v2.0.a1 Prupe.6G031100_v2.0.a1 Prupe.6G031100_v2.0.a1
pyrus_communis pycom03g02940 pycom03g02950 pycom03g02980 pycom03g02990 pycom03g03010 pycom11g03310 pycom11g03320
rosa_chinensis RchiOBHm_Chr3g0484311 RchiOBHm_Chr5g0000231 RchiOBHm_Chr5g0042661 RchiOBHm_Chr5g0042671 RchiOBHm_Chr5g0075281 RchiOBHm_Chr5g0075291 RchiOBHm_Chr5g0075321 RchiOBHm_Chr5g0075331
rosa_laevigata RLG00000034149 RLG00000036545 RLG00000036546 RLG00000036547 RLG00000036548 RLG00000036549 RLG00000036550
rosa_multiflora Rmu_sc0000295.1_g000011 Rmu_sc0000770.1_g000041 Rmu_sc0000770.1_g000049 Rmu_sc0002564.1_g000002 Rmu_sc0002564.1_g000003 Rmu_sc0002564.1_g000016
rosa_roxburghii Rroxscaffold_1G00006200 Rroxscaffold_1G00006210 Rroxscaffold_1G00006220 Rroxscaffold_1G00006250 Rroxscaffold_1G00006270 Rroxscaffold_1G00037900 Rroxscaffold_1G00037980 Rroxscaffold_6G00397790
rosa_rugosa Rorug03G0210600 Rorug05G0203800 Rorug05G0203900 Rorug05G0438100 Rorug05G0438200 Rorug05G0438700 Rorug05G0438900 Rorug05G0438900
rosa_samantha Rh3AG259700 Rh3AG259800 Rh3BG296300 Rh3DG289900 Rh5AG001600 Rh5AG288900 Rh5AG289000 Rh5AG289200 Rh5AG494800 Rh5AG495000 Rh5AG495200 Rh5AG495300 Rh5BG293000 Rh5BG293100 Rh5BG293300 Rh5BG516400 Rh5BG516500 Rh5BG516900 Rh5BG517000 Rh5CG001900 Rh5CG325700 Rh5CG325900 Rh5CG326000 Rh5CG540200 Rh5CG540300 Rh5CG540500 Rh5CG540600 Rh5DG001900 Rh5DG302900 Rh5DG303000 Rh5DG303200 Rh5DG529100 Rh5DG529300 Rh5DG529400 Rh5DG532500
rosa_wichuraiana Rw3G023420 Rw3G023430 Rw5G000210 Rw5G026800 Rw5G045910 Rw5G045920 Rw5G045930 Rw5G045940 Rw5G045950

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AdeI CACNNNGTG 1 cut(s) 86
AfaI GTAC 1 cut(s) 338
AfiI CCNNNNNNNGG 1 cut(s) 323
AgsI TTSAA 4 cut(s) 64, 107, 272, 311
AjnI CCWGG 1 cut(s) 82
AluBI AGCT 2 cut(s) 187, 294
AluI AGCT 2 cut(s) 187, 294
AoxI GGCC 1 cut(s) 257
ApeKI GCWGC 1 cut(s) 71
AsuHPI GGTGA 1 cut(s) 145
BbvI GCAGC 1 cut(s) 83
BciT130I CCWGG 1 cut(s) 84
BfaI CTAG 1 cut(s) 168
BfmI CTRYAG 1 cut(s) 295
BisI GCNGC 1 cut(s) 72
BlsI GCNGC 1 cut(s) 73
Bme1390I CCNGG 1 cut(s) 84
BmrFI CCNGG 1 cut(s) 84
BpmI CTGGAG 1 cut(s) 149
BsaJI CCNNGG 2 cut(s) 54, 246
Bsc4I CCNNNNNNNGG 1 cut(s) 323
BseBI CCWGG 1 cut(s) 84
BseDI CCNNGG 2 cut(s) 54, 246
BseGI GGATG 1 cut(s) 313
BseLI CCNNNNNNNGG 1 cut(s) 323
BseMII CTCAG 1 cut(s) 332
BseXI GCAGC 1 cut(s) 83
BsgI GTGCAG 1 cut(s) 132
BshFI GGCC 1 cut(s) 259
BslI CCNNNNNNNGG 1 cut(s) 323
BsnI GGCC 1 cut(s) 259
Bsp143I GATC 1 cut(s) 121
BspANI GGCC 1 cut(s) 259
BspCNI CTCAG 1 cut(s) 331
BspHI TCATGA 1 cut(s) 346
BssECI CCNNGG 2 cut(s) 54, 246
BssMI GATC 1 cut(s) 121
BssT1I CCWWGG 1 cut(s) 54
Bst2UI CCWGG 1 cut(s) 84
BstDEI CTNAG 1 cut(s) 318
BstENI CCTNNNNNAGG 1 cut(s) 321
BstF5I GGATG 1 cut(s) 313
BstKTI GATC 1 cut(s) 124
BstMBI GATC 1 cut(s) 121
BstMWI GCNNNNNNNGC 1 cut(s) 45
BstNI CCWGG 1 cut(s) 84
BstSCI CCNGG 1 cut(s) 82
BstSFI CTRYAG 1 cut(s) 295
BstV1I GCAGC 1 cut(s) 83
BsuRI GGCC 1 cut(s) 259
BtsCI GGATG 1 cut(s) 313
BtsI GCAGTG 1 cut(s) 34
BtsIMutI CAGTG 1 cut(s) 34
CciI TCATGA 1 cut(s) 346
CsiI ACCWGGT 1 cut(s) 82
Csp6I GTAC 1 cut(s) 337
CviAII CATG 1 cut(s) 347
CviJI RGCY 6 cut(s) 59, 173, 187, 192, 259, 294
CviKI_1 RGCY 6 cut(s) 59, 173, 187, 192, 259, 294
CviQI GTAC 1 cut(s) 337
DdeI CTNAG 1 cut(s) 318
DpnI GATC 1 cut(s) 123
DpnII GATC 1 cut(s) 121
DraIII CACNNNGTG 1 cut(s) 86
Eco130I CCWWGG 1 cut(s) 54
EcoNI CCTNNNNNAGG 1 cut(s) 321
EcoRII CCWGG 1 cut(s) 82
EcoT14I CCWWGG 1 cut(s) 54
ErhI CCWWGG 1 cut(s) 54
FaeI CATG 1 cut(s) 350
FaiI YATR 4 cut(s) 206, 297, 348, 377
FalI AAGNNNNNCTT 2 cut(s) 176, 208
FatI CATG 1 cut(s) 346
Fnu4HI GCNGC 1 cut(s) 72
FokI GGATG 1 cut(s) 300
Fsp4HI GCNGC 1 cut(s) 72
FspBI CTAG 1 cut(s) 168
GluI GCNGC 1 cut(s) 72
GsuI CTGGAG 1 cut(s) 149
HaeIII GGCC 1 cut(s) 259
Hin1II CATG 1 cut(s) 350
HincII GTYRAC 1 cut(s) 151
HindII GTYRAC 1 cut(s) 151
HinfI GANTC 3 cut(s) 152, 227, 268
HphI GGTGA 1 cut(s) 145
Hpy166II GTNNAC 1 cut(s) 151
Hpy188I TCNGA 3 cut(s) 224, 247, 321
Hpy188III TCNNGA 5 cut(s) 64, 128, 231, 347, 359
Hpy8I GTNNAC 1 cut(s) 151
HpyAV CCTTC 1 cut(s) 101
HpyCH4V TGCA 5 cut(s) 7, 28, 48, 71, 113
HpyF10VI GCNNNNNNNGC 1 cut(s) 45
HpyF3I CTNAG 1 cut(s) 318
Hsp92II CATG 1 cut(s) 350
Kzo9I GATC 1 cut(s) 121
LpnPI CCDG 5 cut(s) 69, 96, 113, 244, 372
Lsp1109I GCAGC 1 cut(s) 83
MabI ACCWGGT 1 cut(s) 82
MaeI CTAG 1 cut(s) 168
MalI GATC 1 cut(s) 123
MboI GATC 1 cut(s) 121
MboII GAAGA 2 cut(s) 193, 263
MluCI AATT 1 cut(s) 238
MlyI GAGTC 2 cut(s) 146, 236
MmeI TCCRAC 1 cut(s) 202
MnlI CCTC 3 cut(s) 124, 241, 327
MseI TTAA 1 cut(s) 176
MspR9I CCNGG 1 cut(s) 84
MvaI CCWGG 1 cut(s) 84
MwoI GCNNNNNNNGC 1 cut(s) 45
NdeII GATC 1 cut(s) 121
NlaIII CATG 1 cut(s) 350
NmeAIII GCCGAG 1 cut(s) 168
PagI TCATGA 1 cut(s) 346
PfeI GAWTC 1 cut(s) 268
PkrI GCNGC 1 cut(s) 73
PleI GAGTC 2 cut(s) 146, 235
PpsI GAGTC 2 cut(s) 146, 235
Psp6I CCWGG 1 cut(s) 82
PspGI CCWGG 1 cut(s) 82
RsaI GTAC 1 cut(s) 338
RsaNI GTAC 1 cut(s) 337
SaqAI TTAA 1 cut(s) 176
SatI GCNGC 1 cut(s) 72
Sau3AI GATC 1 cut(s) 121
SchI GAGTC 2 cut(s) 146, 236
ScrFI CCNGG 1 cut(s) 84
SetI ASST 6 cut(s) 88, 112, 135, 189, 296, 328
SexAI ACCWGGT 1 cut(s) 82
SfcI CTRYAG 1 cut(s) 295
Sse9I AATT 1 cut(s) 238
SspI AATATT 1 cut(s) 275
SspMI CTAG 1 cut(s) 168
StyD4I CCNGG 1 cut(s) 82
StyI CCWWGG 1 cut(s) 54
TaqI TCGA 2 cut(s) 101, 213
TasI AATT 1 cut(s) 238
TatI WGTACW 1 cut(s) 336
TfiI GAWTC 1 cut(s) 268
Tru1I TTAA 1 cut(s) 176
Tru9I TTAA 1 cut(s) 176
TscAI CASTG 1 cut(s) 41
TseI GCWGC 1 cut(s) 71
TspDTI ATGAA 1 cut(s) 363
TspRI CASTG 1 cut(s) 41
XagI CCTNNNNNAGG 1 cut(s) 321
XspI CTAG 1 cut(s) 168
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.