Rorug05G0438200

transposition, RNA-mediated

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000005
OG0000276
Physical Location & Seq
Forward (+)
60970257 .. 60970849
593 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug05G0438200.1

Sequence Viewer

Length: 453 bp
ATGACGGTGGATTTTAACCTTGCTTTACTTGCTAAACAATGCTGGAGAATTTTACAACACCCTACTGATTTTTGGCTTAAAATTTTGAAGGCCGGGTATTTTCCTAATATTGATTTCCTGAATGCTACTAAGGGTCATCGTGCCTATTGGGCATGGTCTAGTCTTGTGGAAGCAAAGGATATCATTAGGCAAGTGCTGGTAAATGATCTATTTGCTGCTAACTCTTGCTCTTGGTGTGTCGATACTGTCCAAAAATTCTTTCCTGAAAACATTTCTCGTTTGATTTTGGGTATGCCTATTGGTGATGGTACTGCTGTGGATAGTCTTATTCGGCCTTGGGATAGATCTGGTGCTTACACTGTCAAGTCTGGCTATCATTGGTATCATGCTAAGAGACTTCGATCAATTCCAACTGAGTCTCATACTTCTCTGAATGTTAGTTCTACAGTCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
HMA

Protein Analysis

150

Amino Acids

17.13

Weight (kDa)

9.07

Isoelectric Point (pI)

39.89

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000276)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G05030 AT4G05030
fragaria_vesca FvH4_3g24080 FvH4_3g24080 FvH4_3g24100 FvH4_3g24100 FvH4_3g42050 FvH4_3g42060 FvH4_3g42070 FvH4_3g42071 FvH4_3g42080 FvH4_3g42090 FvH4_3g42100 FvH4_3g42110
malus_domestica MD03G1038100.v1.1 MD03G1038400.v1.1 MD03G1038600.v1.1 MD03G1038900.v1.1 MD03G1039000.v1.1 MD03G1039100.v1.1 MD03G1188500.v1.1 MD10G1233100.v1.1 MD10G1233300.v1.1 MD10G1341200.v1.1 MD11G1039200.v1.1 MD11G1039300.v1.1 MD11G1204400.v1.1 MD11G1204600.v1.1
prunus_persica Prupe.2G123900_v2.0.a1 Prupe.4G001900_v2.0.a1 Prupe.4G234700_v2.0.a1 Prupe.4G234800_v2.0.a1 Prupe.6G025900_v2.0.a1 Prupe.6G030200_v2.0.a1 Prupe.6G030300_v2.0.a1 Prupe.6G030400_v2.0.a1 Prupe.6G030600_v2.0.a1 Prupe.6G030900_v2.0.a1 Prupe.6G031000_v2.0.a1 Prupe.6G031100_v2.0.a1 Prupe.6G031100_v2.0.a1
pyrus_communis pycom03g02940 pycom03g02950 pycom03g02980 pycom03g02990 pycom03g03010 pycom11g03310 pycom11g03320
rosa_chinensis RchiOBHm_Chr3g0484311 RchiOBHm_Chr5g0000231 RchiOBHm_Chr5g0042661 RchiOBHm_Chr5g0042671 RchiOBHm_Chr5g0075281 RchiOBHm_Chr5g0075291 RchiOBHm_Chr5g0075321 RchiOBHm_Chr5g0075331
rosa_laevigata RLG00000034149 RLG00000036545 RLG00000036546 RLG00000036547 RLG00000036548 RLG00000036549 RLG00000036550
rosa_multiflora Rmu_sc0000295.1_g000011 Rmu_sc0000770.1_g000041 Rmu_sc0000770.1_g000049 Rmu_sc0002564.1_g000002 Rmu_sc0002564.1_g000003 Rmu_sc0002564.1_g000016
rosa_roxburghii Rroxscaffold_1G00006200 Rroxscaffold_1G00006210 Rroxscaffold_1G00006220 Rroxscaffold_1G00006250 Rroxscaffold_1G00006270 Rroxscaffold_1G00037900 Rroxscaffold_1G00037980 Rroxscaffold_6G00397790
rosa_rugosa Rorug03G0210600 Rorug05G0203800 Rorug05G0203900 Rorug05G0438100 Rorug05G0438200 Rorug05G0438700 Rorug05G0438900 Rorug05G0438900
rosa_samantha Rh3AG259700 Rh3AG259800 Rh3BG296300 Rh3DG289900 Rh5AG001600 Rh5AG288900 Rh5AG289000 Rh5AG289200 Rh5AG494800 Rh5AG495000 Rh5AG495200 Rh5AG495300 Rh5BG293000 Rh5BG293100 Rh5BG293300 Rh5BG516400 Rh5BG516500 Rh5BG516900 Rh5BG517000 Rh5CG001900 Rh5CG325700 Rh5CG325900 Rh5CG326000 Rh5CG540200 Rh5CG540300 Rh5CG540500 Rh5CG540600 Rh5DG001900 Rh5DG302900 Rh5DG303000 Rh5DG303200 Rh5DG529100 Rh5DG529300 Rh5DG529400 Rh5DG532500
rosa_wichuraiana Rw3G023420 Rw3G023430 Rw5G000210 Rw5G026800 Rw5G045910 Rw5G045920 Rw5G045930 Rw5G045940 Rw5G045950

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcsI RAATTY 3 cut(s) 48, 81, 254
AfaI GTAC 1 cut(s) 310
AgsI TTSAA 1 cut(s) 88
AjuI GAANNNNNNNTTGG 2 cut(s) 243, 275
Alw26I GTCTC 2 cut(s) 388, 423
AoxI GGCC 2 cut(s) 90, 332
ApeKI GCWGC 1 cut(s) 215
ApoI RAATTY 3 cut(s) 48, 81, 254
AsuC2I CCSGG 1 cut(s) 94
AsuHPI GGTGA 1 cut(s) 314
BaeI ACNNNNGTAYC 2 cut(s) 300, 333
BbvI GCAGC 1 cut(s) 202
BccI CCATC 1 cut(s) 299
BcnI CCSGG 1 cut(s) 94
BcoDI GTCTC 2 cut(s) 388, 423
BfaI CTAG 2 cut(s) 159, 451
BfmI CTRYAG 1 cut(s) 444
BglI GCCNNNNNGGC 1 cut(s) 149
BglII AGATCT 1 cut(s) 344
BisI GCNGC 1 cut(s) 216
BlsI GCNGC 1 cut(s) 217
Bme1390I CCNGG 1 cut(s) 94
BmrFI CCNGG 1 cut(s) 94
BpmI CTGGAG 1 cut(s) 64
BpuMI CCSGG 1 cut(s) 94
BsaJI CCNNGG 1 cut(s) 335
BseDI CCNNGG 1 cut(s) 335
BseMII CTCAG 1 cut(s) 405
BseXI GCAGC 1 cut(s) 202
BshFI GGCC 2 cut(s) 92, 334
BsiSI CCGG 1 cut(s) 93
BsmAI GTCTC 2 cut(s) 388, 423
BsmI GAATGC 1 cut(s) 127
BsnI GGCC 2 cut(s) 92, 334
Bsp143I GATC 3 cut(s) 205, 344, 401
BspANI GGCC 2 cut(s) 92, 334
BspCNI CTCAG 1 cut(s) 406
BssECI CCNNGG 1 cut(s) 335
BssMI GATC 3 cut(s) 205, 344, 401
BssT1I CCWWGG 1 cut(s) 335
Bst4CI ACNGT 4 cut(s) 7, 247, 361, 448
BstDEI CTNAG 3 cut(s) 129, 390, 414
BstKTI GATC 3 cut(s) 208, 347, 404
BstMAI GTCTC 2 cut(s) 388, 423
BstMBI GATC 3 cut(s) 205, 344, 401
BstMWI GCNNNNNNNGC 2 cut(s) 29, 149
BstSCI CCNGG 1 cut(s) 92
BstSFI CTRYAG 1 cut(s) 444
BstV1I GCAGC 1 cut(s) 202
BstX2I RGATCY 1 cut(s) 344
BstYI RGATCY 1 cut(s) 344
BsuRI GGCC 2 cut(s) 92, 334
BtsIMutI CAGTG 1 cut(s) 357
Csp6I GTAC 1 cut(s) 309
CviAII CATG 2 cut(s) 153, 386
CviJI RGCY 4 cut(s) 76, 92, 334, 372
CviKI_1 RGCY 4 cut(s) 76, 92, 334, 372
CviQI GTAC 1 cut(s) 309
DdeI CTNAG 3 cut(s) 129, 390, 414
DpnI GATC 3 cut(s) 207, 346, 403
DpnII GATC 3 cut(s) 205, 344, 401
Eco130I CCWWGG 1 cut(s) 335
Eco32I GATATC 1 cut(s) 181
EcoRV GATATC 1 cut(s) 181
EcoT14I CCWWGG 1 cut(s) 335
ErhI CCWWGG 1 cut(s) 335
FaeI CATG 2 cut(s) 156, 389
FaiI YATR 4 cut(s) 154, 293, 387, 423
FatI CATG 2 cut(s) 152, 385
Fnu4HI GCNGC 1 cut(s) 216
Fsp4HI GCNGC 1 cut(s) 216
FspBI CTAG 2 cut(s) 159, 451
GluI GCNGC 1 cut(s) 216
GsuI CTGGAG 1 cut(s) 64
HaeIII GGCC 2 cut(s) 92, 334
HapII CCGG 1 cut(s) 93
Hin1II CATG 2 cut(s) 156, 389
HinfI GANTC 1 cut(s) 416
HpaII CCGG 1 cut(s) 93
HphI GGTGA 1 cut(s) 314
Hpy188I TCNGA 1 cut(s) 432
Hpy188III TCNNGA 2 cut(s) 118, 263
HpyAV CCTTC 1 cut(s) 82
HpyCH4III ACNGT 4 cut(s) 7, 247, 361, 448
HpyF10VI GCNNNNNNNGC 2 cut(s) 29, 149
HpyF3I CTNAG 3 cut(s) 129, 390, 414
Hsp92II CATG 2 cut(s) 156, 389
Kzo9I GATC 3 cut(s) 205, 344, 401
LpnPI CCDG 7 cut(s) 28, 106, 131, 182, 276, 333, 354
Lsp1109I GCAGC 1 cut(s) 202
MaeI CTAG 2 cut(s) 159, 451
MalI GATC 3 cut(s) 207, 346, 403
MboI GATC 3 cut(s) 205, 344, 401
MflI RGATCY 1 cut(s) 344
MluCI AATT 4 cut(s) 48, 81, 254, 405
MlyI GAGTC 1 cut(s) 425
MmeI TCCRAC 1 cut(s) 434
MseI TTAA 2 cut(s) 15, 78
MspI CCGG 1 cut(s) 93
MspR9I CCNGG 1 cut(s) 94
Mva1269I GAATGC 1 cut(s) 127
MwoI GCNNNNNNNGC 2 cut(s) 29, 149
NciI CCSGG 1 cut(s) 94
NdeII GATC 3 cut(s) 205, 344, 401
NlaIII CATG 2 cut(s) 156, 389
PctI GAATGC 1 cut(s) 127
PkrI GCNGC 1 cut(s) 217
PleI GAGTC 1 cut(s) 424
PpsI GAGTC 1 cut(s) 424
PsuI RGATCY 1 cut(s) 344
RsaI GTAC 1 cut(s) 310
RsaNI GTAC 1 cut(s) 309
SaqAI TTAA 2 cut(s) 15, 78
SatI GCNGC 1 cut(s) 216
Sau3AI GATC 3 cut(s) 205, 344, 401
SchI GAGTC 1 cut(s) 425
ScrFI CCNGG 1 cut(s) 94
SetI ASST 1 cut(s) 21
SfcI CTRYAG 1 cut(s) 444
Sse9I AATT 4 cut(s) 48, 81, 254, 405
SspI AATATT 1 cut(s) 109
SspMI CTAG 2 cut(s) 159, 451
StyD4I CCNGG 1 cut(s) 92
StyI CCWWGG 1 cut(s) 335
TaaI ACNGT 4 cut(s) 7, 247, 361, 448
TaqI TCGA 2 cut(s) 240, 400
TasI AATT 4 cut(s) 48, 81, 254, 405
Tru1I TTAA 2 cut(s) 15, 78
Tru9I TTAA 2 cut(s) 15, 78
TscAI CASTG 1 cut(s) 364
TseI GCWGC 1 cut(s) 215
TspRI CASTG 1 cut(s) 364
XapI RAATTY 3 cut(s) 48, 81, 254
XspI CTAG 2 cut(s) 159, 451
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.