MD11G1039200.v1.1

transposition, RNA-mediated

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr11
OG0000276
Physical Location & Seq
Forward (+)
3331777 .. 3332267
491 bp
Loading structure...
UTR
Exon/CDS
Intron
MD11G1039200.v1.1.491

Sequence Viewer

Length: 393 bp
ATGTTTGGCATTAATTTATACAATATGATGCAGCAAAAGATACTAGTGAAGGTGCAAATGCACAGTGACAAATGCAGAACCAAGGCCTTGAAGATTGCAGCAGCTGCATGCGGTGTGAGCAAAGTGTCATTAGAAGGAGAAAACAAAGATCATCTGGAGGTGACAGGAGATGGAGTTGACTCCGTTCGCTTGACGGGGTTGTTAAGGAAGAAGGTCGGCTTCGCCGCCATAGTCCAAATTGAACAAGTGAAAGACGTTACTGCGGATGATGGTCAAAACCCAATTACTATTGAATGCACGTCATCAGCAAGCTATTATTGCACTCCGCAATGTCCTCCAATGTACTATGGAGTGGTTCGTGAATATCCAGAACCAACTTGCTCCATTATGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
HMA

Protein Analysis

131

Amino Acids

14.28

Weight (kDa)

6.7

Isoelectric Point (pI)

40.12

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000276)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G05030 AT4G05030
fragaria_vesca FvH4_3g24080 FvH4_3g24080 FvH4_3g24100 FvH4_3g24100 FvH4_3g42050 FvH4_3g42060 FvH4_3g42070 FvH4_3g42071 FvH4_3g42080 FvH4_3g42090 FvH4_3g42100 FvH4_3g42110
malus_domestica MD03G1038100.v1.1 MD03G1038400.v1.1 MD03G1038600.v1.1 MD03G1038900.v1.1 MD03G1039000.v1.1 MD03G1039100.v1.1 MD03G1188500.v1.1 MD10G1233100.v1.1 MD10G1233300.v1.1 MD10G1341200.v1.1 MD11G1039200.v1.1 MD11G1039300.v1.1 MD11G1204400.v1.1 MD11G1204600.v1.1
prunus_persica Prupe.2G123900_v2.0.a1 Prupe.4G001900_v2.0.a1 Prupe.4G234700_v2.0.a1 Prupe.4G234800_v2.0.a1 Prupe.6G025900_v2.0.a1 Prupe.6G030200_v2.0.a1 Prupe.6G030300_v2.0.a1 Prupe.6G030400_v2.0.a1 Prupe.6G030600_v2.0.a1 Prupe.6G030900_v2.0.a1 Prupe.6G031000_v2.0.a1 Prupe.6G031100_v2.0.a1 Prupe.6G031100_v2.0.a1
pyrus_communis pycom03g02940 pycom03g02950 pycom03g02980 pycom03g02990 pycom03g03010 pycom11g03310 pycom11g03320
rosa_chinensis RchiOBHm_Chr3g0484311 RchiOBHm_Chr5g0000231 RchiOBHm_Chr5g0042661 RchiOBHm_Chr5g0042671 RchiOBHm_Chr5g0075281 RchiOBHm_Chr5g0075291 RchiOBHm_Chr5g0075321 RchiOBHm_Chr5g0075331
rosa_laevigata RLG00000034149 RLG00000036545 RLG00000036546 RLG00000036547 RLG00000036548 RLG00000036549 RLG00000036550
rosa_multiflora Rmu_sc0000295.1_g000011 Rmu_sc0000770.1_g000041 Rmu_sc0000770.1_g000049 Rmu_sc0002564.1_g000002 Rmu_sc0002564.1_g000003 Rmu_sc0002564.1_g000016
rosa_roxburghii Rroxscaffold_1G00006200 Rroxscaffold_1G00006210 Rroxscaffold_1G00006220 Rroxscaffold_1G00006250 Rroxscaffold_1G00006270 Rroxscaffold_1G00037900 Rroxscaffold_1G00037980 Rroxscaffold_6G00397790
rosa_rugosa Rorug03G0210600 Rorug05G0203800 Rorug05G0203900 Rorug05G0438100 Rorug05G0438200 Rorug05G0438700 Rorug05G0438900 Rorug05G0438900
rosa_samantha Rh3AG259700 Rh3AG259800 Rh3BG296300 Rh3DG289900 Rh5AG001600 Rh5AG288900 Rh5AG289000 Rh5AG289200 Rh5AG494800 Rh5AG495000 Rh5AG495200 Rh5AG495300 Rh5BG293000 Rh5BG293100 Rh5BG293300 Rh5BG516400 Rh5BG516500 Rh5BG516900 Rh5BG517000 Rh5CG001900 Rh5CG325700 Rh5CG325900 Rh5CG326000 Rh5CG540200 Rh5CG540300 Rh5CG540500 Rh5CG540600 Rh5DG001900 Rh5DG302900 Rh5DG303000 Rh5DG303200 Rh5DG529100 Rh5DG529300 Rh5DG529400 Rh5DG532500
rosa_wichuraiana Rw3G023420 Rw3G023430 Rw5G000210 Rw5G026800 Rw5G045910 Rw5G045920 Rw5G045930 Rw5G045940 Rw5G045950

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 4 cut(s) 111, 225, 263, 326
AfaI GTAC 1 cut(s) 344
AgsI TTSAA 3 cut(s) 91, 242, 293
AhlI ACTAGT 1 cut(s) 43
AjiI CACGTC 1 cut(s) 300
AluBI AGCT 2 cut(s) 104, 312
AluI AGCT 2 cut(s) 104, 312
AlwNI CAGNNNCTG 1 cut(s) 104
AoxI GGCC 1 cut(s) 84
ApeKI GCWGC 4 cut(s) 31, 98, 101, 104
AseI ATTAAT 1 cut(s) 12
AsuHPI GGTGA 1 cut(s) 172
BbvI GCAGC 4 cut(s) 43, 91, 110, 113
BccI CCATC 2 cut(s) 164, 263
BcuI ACTAGT 1 cut(s) 43
BfaI CTAG 1 cut(s) 44
BisI GCNGC 5 cut(s) 32, 99, 102, 105, 225
BlsI GCNGC 5 cut(s) 33, 100, 103, 106, 226
BmgBI CACGTC 1 cut(s) 300
BmsI GCATC 1 cut(s) 18
BpmI CTGGAG 1 cut(s) 176
BsaJI CCNNGG 1 cut(s) 81
BsaXI ACNNNNNCTCC 2 cut(s) 159, 189
Bse3DI GCAATG 1 cut(s) 335
BseDI CCNNGG 1 cut(s) 81
BseGI GGATG 1 cut(s) 271
BseMI GCAATG 1 cut(s) 335
BseXI GCAGC 4 cut(s) 43, 91, 110, 113
BshFI GGCC 1 cut(s) 86
BsmI GAATGC 1 cut(s) 299
BsnI GGCC 1 cut(s) 86
Bsp143I GATC 1 cut(s) 148
BspACI CCGC 4 cut(s) 111, 225, 263, 326
BspANI GGCC 1 cut(s) 86
BsrDI GCAATG 1 cut(s) 335
BssECI CCNNGG 1 cut(s) 81
BssMI GATC 1 cut(s) 148
BssT1I CCWWGG 1 cut(s) 81
Bst4CI ACNGT 1 cut(s) 65
BstAPI GCANNNNNTGC 1 cut(s) 104
BstC8I GCNNGC 2 cut(s) 109, 310
BstF5I GGATG 1 cut(s) 271
BstKTI GATC 1 cut(s) 151
BstMBI GATC 1 cut(s) 148
BstMWI GCNNNNNNNGC 3 cut(s) 104, 117, 318
BstNSI RCATGY 1 cut(s) 111
BstV1I GCAGC 4 cut(s) 43, 91, 110, 113
BsuRI GGCC 1 cut(s) 86
BtrI CACGTC 1 cut(s) 300
BtsCI GGATG 1 cut(s) 271
BtsIMutI CAGTG 1 cut(s) 70
Cac8I GCNNGC 2 cut(s) 109, 310
CaiI CAGNNNCTG 1 cut(s) 104
Csp6I GTAC 1 cut(s) 343
CviAII CATG 1 cut(s) 108
CviJI RGCY 4 cut(s) 86, 104, 219, 312
CviKI_1 RGCY 4 cut(s) 86, 104, 219, 312
CviQI GTAC 1 cut(s) 343
DpnI GATC 1 cut(s) 150
DpnII GATC 1 cut(s) 148
Eco130I CCWWGG 1 cut(s) 81
Eco147I AGGCCT 1 cut(s) 86
EcoT14I CCWWGG 1 cut(s) 81
ErhI CCWWGG 1 cut(s) 81
FaeI CATG 1 cut(s) 111
FaiI YATR 6 cut(s) 19, 26, 109, 230, 348, 389
FalI AAGNNNNNCTT 2 cut(s) 203, 235
FatI CATG 1 cut(s) 107
Fnu4HI GCNGC 5 cut(s) 32, 99, 102, 105, 225
FokI GGATG 1 cut(s) 278
Fsp4HI GCNGC 5 cut(s) 32, 99, 102, 105, 225
FspBI CTAG 1 cut(s) 44
GluI GCNGC 5 cut(s) 32, 99, 102, 105, 225
GsuI CTGGAG 1 cut(s) 176
HaeIII GGCC 1 cut(s) 86
Hin1II CATG 1 cut(s) 111
HincII GTYRAC 1 cut(s) 178
HindII GTYRAC 1 cut(s) 178
HinfI GANTC 1 cut(s) 179
HphI GGTGA 1 cut(s) 172
Hpy166II GTNNAC 1 cut(s) 178
Hpy188III TCNNGA 3 cut(s) 155, 359, 368
Hpy8I GTNNAC 1 cut(s) 178
HpyAV CCTTC 3 cut(s) 43, 128, 205
HpyCH4III ACNGT 1 cut(s) 65
HpyCH4IV ACGT 2 cut(s) 255, 299
HpyCH4V TGCA 8 cut(s) 31, 55, 61, 75, 98, 107, 297, 321
HpyF10VI GCNNNNNNNGC 3 cut(s) 104, 117, 318
HpySE526I ACGT 2 cut(s) 255, 299
Hsp92II CATG 1 cut(s) 111
Kzo9I GATC 1 cut(s) 148
LmnI GCTCC 1 cut(s) 386
LpnPI CCDG 3 cut(s) 140, 150, 381
Lsp1109I GCAGC 4 cut(s) 43, 91, 110, 113
LweI GCATC 1 cut(s) 18
MaeI CTAG 1 cut(s) 44
MaeII ACGT 2 cut(s) 255, 299
MaeIII GTNAC 3 cut(s) 65, 160, 256
MalI GATC 1 cut(s) 150
MboI GATC 1 cut(s) 148
MboII GAAGA 2 cut(s) 103, 220
MluCI AATT 3 cut(s) 13, 237, 282
MlyI GAGTC 1 cut(s) 173
MnlI CCTC 2 cut(s) 151, 345
MseI TTAA 2 cut(s) 12, 203
MspA1I CMGCKG 1 cut(s) 104
Mva1269I GAATGC 1 cut(s) 299
MwoI GCNNNNNNNGC 3 cut(s) 104, 117, 318
NdeII GATC 1 cut(s) 148
NlaIII CATG 1 cut(s) 111
NmuCI GTSAC 2 cut(s) 65, 160
NspI RCATGY 1 cut(s) 111
PaeI GCATGC 1 cut(s) 111
PceI AGGCCT 1 cut(s) 86
PctI GAATGC 1 cut(s) 299
PkrI GCNGC 5 cut(s) 33, 100, 103, 106, 226
PleI GAGTC 1 cut(s) 173
PpsI GAGTC 1 cut(s) 173
PshBI ATTAAT 1 cut(s) 12
PstNI CAGNNNCTG 1 cut(s) 104
PvuII CAGCTG 1 cut(s) 104
RsaI GTAC 1 cut(s) 344
RsaNI GTAC 1 cut(s) 343
SaqAI TTAA 2 cut(s) 12, 203
SatI GCNGC 5 cut(s) 32, 99, 102, 105, 225
Sau3AI GATC 1 cut(s) 148
SchI GAGTC 1 cut(s) 173
SetI ASST 7 cut(s) 54, 106, 162, 216, 258, 302, 314
SfaNI GCATC 1 cut(s) 18
SpeI ACTAGT 1 cut(s) 43
SphI GCATGC 1 cut(s) 111
Sse9I AATT 3 cut(s) 13, 237, 282
SseBI AGGCCT 1 cut(s) 86
SsiI CCGC 4 cut(s) 111, 225, 263, 326
SspMI CTAG 1 cut(s) 44
StuI AGGCCT 1 cut(s) 86
StyI CCWWGG 1 cut(s) 81
TaaI ACNGT 1 cut(s) 65
TaiI ACGT 2 cut(s) 258, 302
TasI AATT 3 cut(s) 13, 237, 282
TatI WGTACW 1 cut(s) 342
TauI GCSGC 1 cut(s) 227
Tru1I TTAA 2 cut(s) 12, 203
Tru9I TTAA 2 cut(s) 12, 203
TscAI CASTG 1 cut(s) 70
TseFI GTSAC 2 cut(s) 65, 160
TseI GCWGC 4 cut(s) 31, 98, 101, 104
Tsp45I GTSAC 2 cut(s) 65, 160
TspGWI ACGGA 1 cut(s) 172
TspRI CASTG 1 cut(s) 70
VspI ATTAAT 1 cut(s) 12
XceI RCATGY 1 cut(s) 111
XspI CTAG 1 cut(s) 44
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.