Prupe.2G123900_v2.0.a1

transposition, RNA-mediated

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp02
OG0000276
Physical Location & Seq
Reverse (-)
18021286 .. 18022157
872 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.2G123900.1

Sequence Viewer

Length: 366 bp
ATGAAGCAAAAGATAACCATTGAGGCGCAGATTCGATGTGATAAGTGTCGGTCCAAGGCCATGAAGATAGCTGTTGCGGAAGATGGTGTAATATCAGTGGCTTTCCAGGGACCCAACAGAGACAAAATGGTGATAACTGGAGATGGAATTGATGCTGTGGACATGGCGAAGTCGTTGAGGAAGAAGCTTGGCTACGCAGACTTGGTCAGTGTCGAAGAAATAACTGAAAAGAAAGCTGTGAACCAAGATGAACCTAAACAGGAAAAGAAAGCCGAAAATGCAAGACCACAACCTTGTTCTCACCATCCTCAGTTGGAATTCTACATCTATGATCCACCATCAACGAGTATGTGCACCATTTTGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
HMA

Protein Analysis

122

Amino Acids

13.51

Weight (kDa)

7.64

Isoelectric Point (pI)

51.63

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000276)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G05030 AT4G05030
fragaria_vesca FvH4_3g24080 FvH4_3g24080 FvH4_3g24100 FvH4_3g24100 FvH4_3g42050 FvH4_3g42060 FvH4_3g42070 FvH4_3g42071 FvH4_3g42080 FvH4_3g42090 FvH4_3g42100 FvH4_3g42110
malus_domestica MD03G1038100.v1.1 MD03G1038400.v1.1 MD03G1038600.v1.1 MD03G1038900.v1.1 MD03G1039000.v1.1 MD03G1039100.v1.1 MD03G1188500.v1.1 MD10G1233100.v1.1 MD10G1233300.v1.1 MD10G1341200.v1.1 MD11G1039200.v1.1 MD11G1039300.v1.1 MD11G1204400.v1.1 MD11G1204600.v1.1
prunus_persica Prupe.2G123900_v2.0.a1 Prupe.4G001900_v2.0.a1 Prupe.4G234700_v2.0.a1 Prupe.4G234800_v2.0.a1 Prupe.6G025900_v2.0.a1 Prupe.6G030200_v2.0.a1 Prupe.6G030300_v2.0.a1 Prupe.6G030400_v2.0.a1 Prupe.6G030600_v2.0.a1 Prupe.6G030900_v2.0.a1 Prupe.6G031000_v2.0.a1 Prupe.6G031100_v2.0.a1 Prupe.6G031100_v2.0.a1
pyrus_communis pycom03g02940 pycom03g02950 pycom03g02980 pycom03g02990 pycom03g03010 pycom11g03310 pycom11g03320
rosa_chinensis RchiOBHm_Chr3g0484311 RchiOBHm_Chr5g0000231 RchiOBHm_Chr5g0042661 RchiOBHm_Chr5g0042671 RchiOBHm_Chr5g0075281 RchiOBHm_Chr5g0075291 RchiOBHm_Chr5g0075321 RchiOBHm_Chr5g0075331
rosa_laevigata RLG00000034149 RLG00000036545 RLG00000036546 RLG00000036547 RLG00000036548 RLG00000036549 RLG00000036550
rosa_multiflora Rmu_sc0000295.1_g000011 Rmu_sc0000770.1_g000041 Rmu_sc0000770.1_g000049 Rmu_sc0002564.1_g000002 Rmu_sc0002564.1_g000003 Rmu_sc0002564.1_g000016
rosa_roxburghii Rroxscaffold_1G00006200 Rroxscaffold_1G00006210 Rroxscaffold_1G00006220 Rroxscaffold_1G00006250 Rroxscaffold_1G00006270 Rroxscaffold_1G00037900 Rroxscaffold_1G00037980 Rroxscaffold_6G00397790
rosa_rugosa Rorug03G0210600 Rorug05G0203800 Rorug05G0203900 Rorug05G0438100 Rorug05G0438200 Rorug05G0438700 Rorug05G0438900 Rorug05G0438900
rosa_samantha Rh3AG259700 Rh3AG259800 Rh3BG296300 Rh3DG289900 Rh5AG001600 Rh5AG288900 Rh5AG289000 Rh5AG289200 Rh5AG494800 Rh5AG495000 Rh5AG495200 Rh5AG495300 Rh5BG293000 Rh5BG293100 Rh5BG293300 Rh5BG516400 Rh5BG516500 Rh5BG516900 Rh5BG517000 Rh5CG001900 Rh5CG325700 Rh5CG325900 Rh5CG326000 Rh5CG540200 Rh5CG540300 Rh5CG540500 Rh5CG540600 Rh5DG001900 Rh5DG302900 Rh5DG303000 Rh5DG303200 Rh5DG529100 Rh5DG529300 Rh5DG529400 Rh5DG532500
rosa_wichuraiana Rw3G023420 Rw3G023430 Rw5G000210 Rw5G026800 Rw5G045910 Rw5G045920 Rw5G045930 Rw5G045940 Rw5G045950

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 77
AclWI GGATC 1 cut(s) 326
AcsI RAATTY 1 cut(s) 317
AjnI CCWGG 1 cut(s) 105
AluBI AGCT 3 cut(s) 71, 187, 236
AluI AGCT 3 cut(s) 71, 187, 236
Alw21I GWGCWC 1 cut(s) 356
Alw26I GTCTC 1 cut(s) 114
Alw44I GTGCAC 1 cut(s) 352
AlwI GGATC 1 cut(s) 326
AoxI GGCC 1 cut(s) 57
ApaLI GTGCAC 1 cut(s) 352
ApoI RAATTY 1 cut(s) 317
AspLEI GCGC 1 cut(s) 28
AspS9I GGNCC 2 cut(s) 51, 110
AsuHPI GGTGA 2 cut(s) 142, 293
AvaII GGWCC 2 cut(s) 51, 110
BaeGI GKGCMC 1 cut(s) 356
BarI GAAGNNNNNNTAC 2 cut(s) 176, 208
Bbv12I GWGCWC 1 cut(s) 356
BccI CCATC 4 cut(s) 77, 137, 312, 346
BciT130I CCWGG 1 cut(s) 107
BcoDI GTCTC 1 cut(s) 114
Bme1390I CCNGG 1 cut(s) 107
Bme18I GGWCC 2 cut(s) 51, 110
BmgT120I GGNCC 2 cut(s) 51, 110
BmiI GGNNCC 2 cut(s) 111, 112
BmrFI CCNGG 1 cut(s) 107
BmsI GCATC 1 cut(s) 142
BpmI CTGGAG 1 cut(s) 159
BsaJI CCNNGG 2 cut(s) 54, 106
Bse1I ACTGG 1 cut(s) 142
BseBI CCWGG 1 cut(s) 107
BseDI CCNNGG 2 cut(s) 54, 106
BseGI GGATG 1 cut(s) 304
BseMII CTCAG 1 cut(s) 323
BseNI ACTGG 1 cut(s) 142
BseSI GKGCMC 1 cut(s) 356
BshFI GGCC 1 cut(s) 59
BsiHKAI GWGCWC 1 cut(s) 356
BslFI GGGAC 1 cut(s) 123
BsmAI GTCTC 1 cut(s) 114
BsmFI GGGAC 1 cut(s) 123
BsnI GGCC 1 cut(s) 59
Bsp1286I GDGCHC 1 cut(s) 356
Bsp143I GATC 1 cut(s) 331
BspACI CCGC 1 cut(s) 77
BspANI GGCC 1 cut(s) 59
BspCNI CTCAG 1 cut(s) 322
BspLI GGNNCC 2 cut(s) 111, 112
BspPI GGATC 1 cut(s) 326
BsrI ACTGG 1 cut(s) 142
BssECI CCNNGG 2 cut(s) 54, 106
BssMI GATC 1 cut(s) 331
BssT1I CCWWGG 1 cut(s) 54
Bst2UI CCWGG 1 cut(s) 107
BstDEI CTNAG 1 cut(s) 309
BstF5I GGATG 1 cut(s) 304
BstHHI GCGC 1 cut(s) 28
BstKTI GATC 1 cut(s) 334
BstMAI GTCTC 1 cut(s) 114
BstMBI GATC 1 cut(s) 331
BstMWI GCNNNNNNNGC 1 cut(s) 278
BstNI CCWGG 1 cut(s) 107
BstSCI CCNGG 1 cut(s) 105
BstSLI GKGCMC 1 cut(s) 356
BsuRI GGCC 1 cut(s) 59
BtsCI GGATG 1 cut(s) 304
BtsIMutI CAGTG 2 cut(s) 102, 214
CfoI GCGC 1 cut(s) 28
Cfr13I GGNCC 2 cut(s) 51, 110
CviAII CATG 2 cut(s) 61, 163
CviJI RGCY 7 cut(s) 59, 71, 101, 187, 192, 236, 272
CviKI_1 RGCY 7 cut(s) 59, 71, 101, 187, 192, 236, 272
DdeI CTNAG 1 cut(s) 309
DpnI GATC 1 cut(s) 333
DpnII GATC 1 cut(s) 331
Eco130I CCWWGG 1 cut(s) 54
Eco47I GGWCC 2 cut(s) 51, 110
EcoO109I RGGNCCY 1 cut(s) 110
EcoRI GAATTC 1 cut(s) 317
EcoRII CCWGG 1 cut(s) 105
EcoT14I CCWWGG 1 cut(s) 54
ErhI CCWWGG 1 cut(s) 54
FaeI CATG 2 cut(s) 64, 166
FaiI YATR 4 cut(s) 62, 164, 330, 350
FaqI GGGAC 1 cut(s) 123
FatI CATG 2 cut(s) 60, 162
FokI GGATG 1 cut(s) 291
GlaI GCGC 1 cut(s) 27
GsuI CTGGAG 1 cut(s) 159
HaeIII GGCC 1 cut(s) 59
HhaI GCGC 1 cut(s) 28
Hin1II CATG 2 cut(s) 64, 166
Hin6I GCGC 1 cut(s) 26
HinP1I GCGC 1 cut(s) 26
HindIII AAGCTT 1 cut(s) 185
HinfI GANTC 1 cut(s) 31
HphI GGTGA 2 cut(s) 142, 293
Hpy166II GTNNAC 3 cut(s) 160, 241, 354
Hpy8I GTNNAC 3 cut(s) 160, 241, 354
HpyCH4V TGCA 2 cut(s) 281, 354
HpyF10VI GCNNNNNNNGC 1 cut(s) 278
HpyF3I CTNAG 1 cut(s) 309
Hsp92II CATG 2 cut(s) 64, 166
HspAI GCGC 1 cut(s) 26
KflI GGGWCCC 1 cut(s) 110
Kzo9I GATC 1 cut(s) 331
LpnPI CCDG 4 cut(s) 92, 119, 123, 245
LweI GCATC 1 cut(s) 142
MalI GATC 1 cut(s) 333
MboI GATC 1 cut(s) 331
MboII GAAGA 4 cut(s) 76, 92, 193, 227
MhlI GDGCHC 1 cut(s) 356
MluCI AATT 2 cut(s) 147, 317
MmeI TCCRAC 1 cut(s) 294
MnlI CCTC 3 cut(s) 16, 171, 318
MspR9I CCNGG 1 cut(s) 107
MvaI CCWGG 1 cut(s) 107
MwoI GCNNNNNNNGC 1 cut(s) 278
NdeII GATC 1 cut(s) 331
NlaIII CATG 2 cut(s) 64, 166
NlaIV GGNNCC 2 cut(s) 111, 112
PfeI GAWTC 1 cut(s) 31
PflFI GACNNNGTC 1 cut(s) 203
PpuMI RGGWCCY 1 cut(s) 110
Psp5II RGGWCCY 1 cut(s) 110
Psp6I CCWGG 1 cut(s) 105
PspGI CCWGG 1 cut(s) 105
PspN4I GGNNCC 2 cut(s) 111, 112
PspPI GGNCC 2 cut(s) 51, 110
PspPPI RGGWCCY 1 cut(s) 110
PsyI GACNNNGTC 1 cut(s) 203
Sau3AI GATC 1 cut(s) 331
Sau96I GGNCC 2 cut(s) 51, 110
ScrFI CCNGG 1 cut(s) 107
SduI GDGCHC 1 cut(s) 356
SetI ASST 5 cut(s) 73, 189, 238, 256, 295
SfaNI GCATC 1 cut(s) 142
SinI GGWCC 2 cut(s) 51, 110
Sse9I AATT 2 cut(s) 147, 317
SsiI CCGC 1 cut(s) 77
StyD4I CCNGG 1 cut(s) 105
StyI CCWWGG 1 cut(s) 54
TaqI TCGA 2 cut(s) 34, 213
TaqII GACCGA 1 cut(s) 39
TasI AATT 2 cut(s) 147, 317
TfiI GAWTC 1 cut(s) 31
TscAI CASTG 2 cut(s) 102, 214
TspDTI ATGAA 3 cut(s) 17, 77, 264
TspRI CASTG 2 cut(s) 102, 214
Tth111I GACNNNGTC 1 cut(s) 203
VneI GTGCAC 1 cut(s) 352
VpaK11BI GGWCC 2 cut(s) 51, 110
XapI RAATTY 1 cut(s) 317
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.