Prupe.4G234800_v2.0.a1

transposition, RNA-mediated

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp04
OG0000276
Physical Location & Seq
Forward (+)
15159385 .. 15160512
1128 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.4G234800.1

Sequence Viewer

Length: 240 bp
ATGAAGCAAAAGATAACCATTGAAGCGCAGATTCAATGCGATAAATGTCGGTCCCAGGCCATGAAGATTGCTGTTGCGGAAGATGGTGTAATATCAGTGGCTTTCCAGGGACCAAACAGAGACAAAATGGTGATAACTGGAGATGGAGTTGATGCTGCGGACATGGCCAAGTCGTTGAGGAAGAAGCTTGGCTATGCAGACTTGGTGAGTGTGGAAGAAATAACTGAAAAGAAAGCTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
HMA

Protein Analysis

80

Amino Acids

8.59

Weight (kDa)

7.73

Isoelectric Point (pI)

38.9

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000276)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G05030 AT4G05030
fragaria_vesca FvH4_3g24080 FvH4_3g24080 FvH4_3g24100 FvH4_3g24100 FvH4_3g42050 FvH4_3g42060 FvH4_3g42070 FvH4_3g42071 FvH4_3g42080 FvH4_3g42090 FvH4_3g42100 FvH4_3g42110
malus_domestica MD03G1038100.v1.1 MD03G1038400.v1.1 MD03G1038600.v1.1 MD03G1038900.v1.1 MD03G1039000.v1.1 MD03G1039100.v1.1 MD03G1188500.v1.1 MD10G1233100.v1.1 MD10G1233300.v1.1 MD10G1341200.v1.1 MD11G1039200.v1.1 MD11G1039300.v1.1 MD11G1204400.v1.1 MD11G1204600.v1.1
prunus_persica Prupe.2G123900_v2.0.a1 Prupe.4G001900_v2.0.a1 Prupe.4G234700_v2.0.a1 Prupe.4G234800_v2.0.a1 Prupe.6G025900_v2.0.a1 Prupe.6G030200_v2.0.a1 Prupe.6G030300_v2.0.a1 Prupe.6G030400_v2.0.a1 Prupe.6G030600_v2.0.a1 Prupe.6G030900_v2.0.a1 Prupe.6G031000_v2.0.a1 Prupe.6G031100_v2.0.a1 Prupe.6G031100_v2.0.a1
pyrus_communis pycom03g02940 pycom03g02950 pycom03g02980 pycom03g02990 pycom03g03010 pycom11g03310 pycom11g03320
rosa_chinensis RchiOBHm_Chr3g0484311 RchiOBHm_Chr5g0000231 RchiOBHm_Chr5g0042661 RchiOBHm_Chr5g0042671 RchiOBHm_Chr5g0075281 RchiOBHm_Chr5g0075291 RchiOBHm_Chr5g0075321 RchiOBHm_Chr5g0075331
rosa_laevigata RLG00000034149 RLG00000036545 RLG00000036546 RLG00000036547 RLG00000036548 RLG00000036549 RLG00000036550
rosa_multiflora Rmu_sc0000295.1_g000011 Rmu_sc0000770.1_g000041 Rmu_sc0000770.1_g000049 Rmu_sc0002564.1_g000002 Rmu_sc0002564.1_g000003 Rmu_sc0002564.1_g000016
rosa_roxburghii Rroxscaffold_1G00006200 Rroxscaffold_1G00006210 Rroxscaffold_1G00006220 Rroxscaffold_1G00006250 Rroxscaffold_1G00006270 Rroxscaffold_1G00037900 Rroxscaffold_1G00037980 Rroxscaffold_6G00397790
rosa_rugosa Rorug03G0210600 Rorug05G0203800 Rorug05G0203900 Rorug05G0438100 Rorug05G0438200 Rorug05G0438700 Rorug05G0438900 Rorug05G0438900
rosa_samantha Rh3AG259700 Rh3AG259800 Rh3BG296300 Rh3DG289900 Rh5AG001600 Rh5AG288900 Rh5AG289000 Rh5AG289200 Rh5AG494800 Rh5AG495000 Rh5AG495200 Rh5AG495300 Rh5BG293000 Rh5BG293100 Rh5BG293300 Rh5BG516400 Rh5BG516500 Rh5BG516900 Rh5BG517000 Rh5CG001900 Rh5CG325700 Rh5CG325900 Rh5CG326000 Rh5CG540200 Rh5CG540300 Rh5CG540500 Rh5CG540600 Rh5DG001900 Rh5DG302900 Rh5DG303000 Rh5DG303200 Rh5DG529100 Rh5DG529300 Rh5DG529400 Rh5DG532500
rosa_wichuraiana Rw3G023420 Rw3G023430 Rw5G000210 Rw5G026800 Rw5G045910 Rw5G045920 Rw5G045930 Rw5G045940 Rw5G045950

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 77, 158
AcoI YGGCCR 1 cut(s) 165
AgsI TTSAA 2 cut(s) 23, 35
AjnI CCWGG 2 cut(s) 54, 105
AluBI AGCT 2 cut(s) 187, 236
AluI AGCT 2 cut(s) 187, 236
Alw26I GTCTC 1 cut(s) 114
AoxI GGCC 2 cut(s) 57, 165
ApeKI GCWGC 1 cut(s) 155
AspLEI GCGC 1 cut(s) 28
AspS9I GGNCC 2 cut(s) 51, 110
AsuHPI GGTGA 2 cut(s) 142, 217
AvaII GGWCC 2 cut(s) 51, 110
BalI TGGCCA 1 cut(s) 167
BbvI GCAGC 1 cut(s) 142
BccI CCATC 2 cut(s) 77, 137
BciT130I CCWGG 2 cut(s) 56, 107
BcoDI GTCTC 1 cut(s) 114
BisI GCNGC 1 cut(s) 156
BlsI GCNGC 1 cut(s) 157
Bme1390I CCNGG 2 cut(s) 56, 107
Bme18I GGWCC 2 cut(s) 51, 110
BmgT120I GGNCC 2 cut(s) 51, 110
BmiI GGNNCC 2 cut(s) 53, 111
BmrFI CCNGG 2 cut(s) 56, 107
BmsI GCATC 1 cut(s) 142
BpmI CTGGAG 1 cut(s) 159
BsaJI CCNNGG 2 cut(s) 54, 106
BsaXI ACNNNNNCTCC 2 cut(s) 132, 162
Bse1I ACTGG 1 cut(s) 142
BseBI CCWGG 2 cut(s) 56, 107
BseDI CCNNGG 2 cut(s) 54, 106
BseNI ACTGG 1 cut(s) 142
BseXI GCAGC 1 cut(s) 142
BshFI GGCC 2 cut(s) 59, 167
BslFI GGGAC 2 cut(s) 37, 123
BsmAI GTCTC 1 cut(s) 114
BsmFI GGGAC 2 cut(s) 37, 123
BsnI GGCC 2 cut(s) 59, 167
BspACI CCGC 2 cut(s) 77, 158
BspANI GGCC 2 cut(s) 59, 167
BspLI GGNNCC 2 cut(s) 53, 111
BsrI ACTGG 1 cut(s) 142
BssECI CCNNGG 2 cut(s) 54, 106
Bst2UI CCWGG 2 cut(s) 56, 107
BstDEI CTNAG 1 cut(s) 237
BstHHI GCGC 1 cut(s) 28
BstMAI GTCTC 1 cut(s) 114
BstMWI GCNNNNNNNGC 1 cut(s) 164
BstNI CCWGG 2 cut(s) 56, 107
BstSCI CCNGG 2 cut(s) 54, 105
BstV1I GCAGC 1 cut(s) 142
BsuRI GGCC 2 cut(s) 59, 167
BtsIMutI CAGTG 1 cut(s) 102
CfoI GCGC 1 cut(s) 28
Cfr13I GGNCC 2 cut(s) 51, 110
CviAII CATG 2 cut(s) 61, 163
CviJI RGCY 6 cut(s) 59, 101, 167, 187, 192, 236
CviKI_1 RGCY 6 cut(s) 59, 101, 167, 187, 192, 236
DdeI CTNAG 1 cut(s) 237
EaeI YGGCCR 1 cut(s) 165
Eco47I GGWCC 2 cut(s) 51, 110
EcoRII CCWGG 2 cut(s) 54, 105
FaeI CATG 2 cut(s) 64, 166
FaiI YATR 3 cut(s) 62, 164, 195
FaqI GGGAC 2 cut(s) 37, 123
FatI CATG 2 cut(s) 60, 162
Fnu4HI GCNGC 1 cut(s) 156
Fsp4HI GCNGC 1 cut(s) 156
GlaI GCGC 1 cut(s) 27
GluI GCNGC 1 cut(s) 156
GsuI CTGGAG 1 cut(s) 159
HaeIII GGCC 2 cut(s) 59, 167
HhaI GCGC 1 cut(s) 28
Hin1II CATG 2 cut(s) 64, 166
Hin6I GCGC 1 cut(s) 26
HinP1I GCGC 1 cut(s) 26
HindIII AAGCTT 2 cut(s) 185, 234
HinfI GANTC 1 cut(s) 31
HphI GGTGA 2 cut(s) 142, 217
HpyCH4V TGCA 1 cut(s) 197
HpyF10VI GCNNNNNNNGC 1 cut(s) 164
HpyF3I CTNAG 1 cut(s) 237
Hsp92II CATG 2 cut(s) 64, 166
HspAI GCGC 1 cut(s) 26
LpnPI CCDG 5 cut(s) 41, 68, 92, 119, 123
Lsp1109I GCAGC 1 cut(s) 142
LweI GCATC 1 cut(s) 142
MboII GAAGA 4 cut(s) 76, 92, 193, 227
MlsI TGGCCA 1 cut(s) 167
MluNI TGGCCA 1 cut(s) 167
MnlI CCTC 1 cut(s) 171
Mox20I TGGCCA 1 cut(s) 167
MscI TGGCCA 1 cut(s) 167
Msp20I TGGCCA 1 cut(s) 167
MspR9I CCNGG 2 cut(s) 56, 107
MvaI CCWGG 2 cut(s) 56, 107
MwoI GCNNNNNNNGC 1 cut(s) 164
NlaIII CATG 2 cut(s) 64, 166
NlaIV GGNNCC 2 cut(s) 53, 111
PfeI GAWTC 1 cut(s) 31
PkrI GCNGC 1 cut(s) 157
Psp6I CCWGG 2 cut(s) 54, 105
PspGI CCWGG 2 cut(s) 54, 105
PspN4I GGNNCC 2 cut(s) 53, 111
PspPI GGNCC 2 cut(s) 51, 110
SatI GCNGC 1 cut(s) 156
Sau96I GGNCC 2 cut(s) 51, 110
ScrFI CCNGG 2 cut(s) 56, 107
SetI ASST 2 cut(s) 189, 238
SfaNI GCATC 1 cut(s) 142
SinI GGWCC 2 cut(s) 51, 110
SsiI CCGC 2 cut(s) 77, 158
StyD4I CCNGG 2 cut(s) 54, 105
TaqII GACCGA 1 cut(s) 39
TfiI GAWTC 1 cut(s) 31
TscAI CASTG 1 cut(s) 102
TseI GCWGC 1 cut(s) 155
TspDTI ATGAA 2 cut(s) 17, 77
TspRI CASTG 1 cut(s) 102
VpaK11BI GGWCC 2 cut(s) 51, 110
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.