Prupe.6G025900_v2.0.a1

transposition, RNA-mediated

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp06
OG0000276
Physical Location & Seq
Reverse (-)
2054131 .. 2054415
285 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.6G025900.1

Sequence Viewer

Length: 285 bp
ATGATTACATATAAAGCAGGTGTGAGCAAAGTGTCGATCGAAGGAGCAGACAAAGATCATATTGAGGTGATTGGAGATGGGGTTGACTCTGTTTGCTTGGCCAGTTTGTTAAGGAAGAAGCTTGGCTTCGCCGCCATTGTCAAAGTTGAAGAAGTGAAAGAAGCTAAAGCTGACGAGAAAGAGGAAAAGCCAACCGGTCCTCCAGGCTGTGTTCACTATTGTCCTCCAATGTACTATGTACTGGCTCATGAATATCCAGAACCAGTCCAATGCTCTATCATGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
HMA

Protein Analysis

95

Amino Acids

10.25

Weight (kDa)

5.3

Isoelectric Point (pI)

44.46

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000276)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G05030 AT4G05030
fragaria_vesca FvH4_3g24080 FvH4_3g24080 FvH4_3g24100 FvH4_3g24100 FvH4_3g42050 FvH4_3g42060 FvH4_3g42070 FvH4_3g42071 FvH4_3g42080 FvH4_3g42090 FvH4_3g42100 FvH4_3g42110
malus_domestica MD03G1038100.v1.1 MD03G1038400.v1.1 MD03G1038600.v1.1 MD03G1038900.v1.1 MD03G1039000.v1.1 MD03G1039100.v1.1 MD03G1188500.v1.1 MD10G1233100.v1.1 MD10G1233300.v1.1 MD10G1341200.v1.1 MD11G1039200.v1.1 MD11G1039300.v1.1 MD11G1204400.v1.1 MD11G1204600.v1.1
prunus_persica Prupe.2G123900_v2.0.a1 Prupe.4G001900_v2.0.a1 Prupe.4G234700_v2.0.a1 Prupe.4G234800_v2.0.a1 Prupe.6G025900_v2.0.a1 Prupe.6G030200_v2.0.a1 Prupe.6G030300_v2.0.a1 Prupe.6G030400_v2.0.a1 Prupe.6G030600_v2.0.a1 Prupe.6G030900_v2.0.a1 Prupe.6G031000_v2.0.a1 Prupe.6G031100_v2.0.a1 Prupe.6G031100_v2.0.a1
pyrus_communis pycom03g02940 pycom03g02950 pycom03g02980 pycom03g02990 pycom03g03010 pycom11g03310 pycom11g03320
rosa_chinensis RchiOBHm_Chr3g0484311 RchiOBHm_Chr5g0000231 RchiOBHm_Chr5g0042661 RchiOBHm_Chr5g0042671 RchiOBHm_Chr5g0075281 RchiOBHm_Chr5g0075291 RchiOBHm_Chr5g0075321 RchiOBHm_Chr5g0075331
rosa_laevigata RLG00000034149 RLG00000036545 RLG00000036546 RLG00000036547 RLG00000036548 RLG00000036549 RLG00000036550
rosa_multiflora Rmu_sc0000295.1_g000011 Rmu_sc0000770.1_g000041 Rmu_sc0000770.1_g000049 Rmu_sc0002564.1_g000002 Rmu_sc0002564.1_g000003 Rmu_sc0002564.1_g000016
rosa_roxburghii Rroxscaffold_1G00006200 Rroxscaffold_1G00006210 Rroxscaffold_1G00006220 Rroxscaffold_1G00006250 Rroxscaffold_1G00006270 Rroxscaffold_1G00037900 Rroxscaffold_1G00037980 Rroxscaffold_6G00397790
rosa_rugosa Rorug03G0210600 Rorug05G0203800 Rorug05G0203900 Rorug05G0438100 Rorug05G0438200 Rorug05G0438700 Rorug05G0438900 Rorug05G0438900
rosa_samantha Rh3AG259700 Rh3AG259800 Rh3BG296300 Rh3DG289900 Rh5AG001600 Rh5AG288900 Rh5AG289000 Rh5AG289200 Rh5AG494800 Rh5AG495000 Rh5AG495200 Rh5AG495300 Rh5BG293000 Rh5BG293100 Rh5BG293300 Rh5BG516400 Rh5BG516500 Rh5BG516900 Rh5BG517000 Rh5CG001900 Rh5CG325700 Rh5CG325900 Rh5CG326000 Rh5CG540200 Rh5CG540300 Rh5CG540500 Rh5CG540600 Rh5DG001900 Rh5DG302900 Rh5DG303000 Rh5DG303200 Rh5DG529100 Rh5DG529300 Rh5DG529400 Rh5DG532500
rosa_wichuraiana Rw3G023420 Rw3G023430 Rw5G000210 Rw5G026800 Rw5G045910 Rw5G045920 Rw5G045930 Rw5G045940 Rw5G045950

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 8
Acc36I ACCTGC 1 cut(s) 8
AciI CCGC 1 cut(s) 132
AcoI YGGCCR 1 cut(s) 99
AfaI GTAC 2 cut(s) 233, 240
AgeI ACCGGT 1 cut(s) 194
AgsI TTSAA 1 cut(s) 149
AjnI CCWGG 1 cut(s) 202
AluBI AGCT 3 cut(s) 121, 164, 170
AluI AGCT 3 cut(s) 121, 164, 170
AoxI GGCC 1 cut(s) 99
AsiGI ACCGGT 1 cut(s) 194
AspS9I GGNCC 1 cut(s) 197
AsuHPI GGTGA 1 cut(s) 79
AvaII GGWCC 1 cut(s) 197
BalI TGGCCA 1 cut(s) 101
BccI CCATC 1 cut(s) 71
BciT130I CCWGG 1 cut(s) 204
BfuAI ACCTGC 1 cut(s) 8
BisI GCNGC 1 cut(s) 132
BlsI GCNGC 1 cut(s) 133
Bme1390I CCNGG 1 cut(s) 204
Bme18I GGWCC 1 cut(s) 197
BmgT120I GGNCC 1 cut(s) 197
BmrFI CCNGG 1 cut(s) 204
BpmI CTGGAG 1 cut(s) 186
BsaWI WCCGGW 1 cut(s) 194
BsaXI ACNNNNNCTCC 4 cut(s) 66, 96, 184, 214
Bse118I RCCGGY 1 cut(s) 194
Bse1I ACTGG 3 cut(s) 102, 246, 263
BseBI CCWGG 1 cut(s) 204
BseNI ACTGG 3 cut(s) 102, 246, 263
Bsh1285I CGRYCG 1 cut(s) 39
BshFI GGCC 1 cut(s) 101
BshTI ACCGGT 1 cut(s) 194
BsiEI CGRYCG 1 cut(s) 39
BsiSI CCGG 1 cut(s) 195
BsnI GGCC 1 cut(s) 101
Bsp143I GATC 2 cut(s) 36, 55
BspACI CCGC 1 cut(s) 132
BspANI GGCC 1 cut(s) 101
BspHI TCATGA 1 cut(s) 247
BspMI ACCTGC 1 cut(s) 8
BsrFI RCCGGY 1 cut(s) 194
BsrI ACTGG 3 cut(s) 102, 246, 263
BssAI RCCGGY 1 cut(s) 194
BssMI GATC 2 cut(s) 36, 55
Bst2UI CCWGG 1 cut(s) 204
BstKTI GATC 2 cut(s) 39, 58
BstMBI GATC 2 cut(s) 36, 55
BstMCI CGRYCG 1 cut(s) 39
BstNI CCWGG 1 cut(s) 204
BstSCI CCNGG 1 cut(s) 202
BsuRI GGCC 1 cut(s) 101
BveI ACCTGC 1 cut(s) 8
CciI TCATGA 1 cut(s) 247
Cfr10I RCCGGY 1 cut(s) 194
Cfr13I GGNCC 1 cut(s) 197
Csp6I GTAC 2 cut(s) 232, 239
CspAI ACCGGT 1 cut(s) 194
CviAII CATG 2 cut(s) 248, 280
CviJI RGCY 8 cut(s) 101, 121, 126, 164, 170, 190, 207, 245
CviKI_1 RGCY 8 cut(s) 101, 121, 126, 164, 170, 190, 207, 245
CviQI GTAC 2 cut(s) 232, 239
DpnI GATC 2 cut(s) 38, 57
DpnII GATC 2 cut(s) 36, 55
EaeI YGGCCR 1 cut(s) 99
Eco47I GGWCC 1 cut(s) 197
EcoRII CCWGG 1 cut(s) 202
FaeI CATG 2 cut(s) 251, 283
FaiI YATR 6 cut(s) 10, 12, 60, 237, 249, 281
FalI AAGNNNNNCTT 2 cut(s) 110, 142
FatI CATG 2 cut(s) 247, 279
Fnu4HI GCNGC 1 cut(s) 132
Fsp4HI GCNGC 1 cut(s) 132
GluI GCNGC 1 cut(s) 132
GsuI CTGGAG 1 cut(s) 186
HaeIII GGCC 1 cut(s) 101
HapII CCGG 1 cut(s) 195
Hin1II CATG 2 cut(s) 251, 283
HincII GTYRAC 1 cut(s) 85
HindII GTYRAC 1 cut(s) 85
HindIII AAGCTT 1 cut(s) 119
HinfI GANTC 1 cut(s) 86
HpaII CCGG 1 cut(s) 195
HphI GGTGA 1 cut(s) 79
Hpy166II GTNNAC 2 cut(s) 85, 214
Hpy188III TCNNGA 2 cut(s) 248, 257
Hpy8I GTNNAC 2 cut(s) 85, 214
HpyAV CCTTC 1 cut(s) 35
Hsp92II CATG 2 cut(s) 251, 283
Kzo9I GATC 2 cut(s) 36, 55
LmnI GCTCC 1 cut(s) 44
LpnPI CCDG 8 cut(s) 3, 115, 189, 208, 216, 227, 270, 276
MalI GATC 2 cut(s) 38, 57
MboI GATC 2 cut(s) 36, 55
MboII GAAGA 2 cut(s) 127, 161
MlsI TGGCCA 1 cut(s) 101
MluNI TGGCCA 1 cut(s) 101
MlyI GAGTC 1 cut(s) 80
MnlI CCTC 4 cut(s) 58, 175, 210, 234
Mox20I TGGCCA 1 cut(s) 101
MscI TGGCCA 1 cut(s) 101
MseI TTAA 1 cut(s) 110
Msp20I TGGCCA 1 cut(s) 101
MspI CCGG 1 cut(s) 195
MspR9I CCNGG 1 cut(s) 204
MvaI CCWGG 1 cut(s) 204
NdeII GATC 2 cut(s) 36, 55
NlaIII CATG 2 cut(s) 251, 283
PagI TCATGA 1 cut(s) 247
PaqCI CACCTGC 1 cut(s) 8
PinAI ACCGGT 1 cut(s) 194
PkrI GCNGC 1 cut(s) 133
Ple19I CGATCG 1 cut(s) 39
PleI GAGTC 1 cut(s) 80
PpsI GAGTC 1 cut(s) 80
Psp6I CCWGG 1 cut(s) 202
PspGI CCWGG 1 cut(s) 202
PspPI GGNCC 1 cut(s) 197
PvuI CGATCG 1 cut(s) 39
RsaI GTAC 2 cut(s) 233, 240
RsaNI GTAC 2 cut(s) 232, 239
SaqAI TTAA 1 cut(s) 110
SatI GCNGC 1 cut(s) 132
Sau3AI GATC 2 cut(s) 36, 55
Sau96I GGNCC 1 cut(s) 197
SchI GAGTC 1 cut(s) 80
ScrFI CCNGG 1 cut(s) 204
SetI ASST 5 cut(s) 22, 69, 123, 166, 172
SinI GGWCC 1 cut(s) 197
SsiI CCGC 1 cut(s) 132
StyD4I CCNGG 1 cut(s) 202
TaqI TCGA 2 cut(s) 35, 39
TatI WGTACW 2 cut(s) 231, 238
TauI GCSGC 1 cut(s) 134
Tru1I TTAA 1 cut(s) 110
Tru9I TTAA 1 cut(s) 110
TspDTI ATGAA 1 cut(s) 264
VpaK11BI GGWCC 1 cut(s) 197
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.