FvH4_3g42100

transposition, RNA-mediated

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb3
OG0000276
Physical Location & Seq
Reverse (-)
35185854 .. 35186698
845 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_3g42100.t1

Sequence Viewer

Length: 231 bp
ATGATGCAAAAGATACTAGTGAAGTTGCGCGTTCATCGCGACAAATGCAGAACCAAGGCTATGAAGATTGCGGCCACTGCACCTGGTGTGACCAAAGTGTCAATACAAGGTGAAGAACGAGATCATGTGGAGGTGATTGGGGATGGAGTTGACTCGGTTTGCCTGACTAGGGCTATGAGGAAGAAGCTTGGATCTGCCGATATAGTCAAGGTCGAACAAATGGGATCATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
HMA

Protein Analysis

77

Amino Acids

8.35

Weight (kDa)

9.76

Isoelectric Point (pI)

12.1

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000276)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G05030 AT4G05030
fragaria_vesca FvH4_3g24080 FvH4_3g24080 FvH4_3g24100 FvH4_3g24100 FvH4_3g42050 FvH4_3g42060 FvH4_3g42070 FvH4_3g42071 FvH4_3g42080 FvH4_3g42090 FvH4_3g42100 FvH4_3g42110
malus_domestica MD03G1038100.v1.1 MD03G1038400.v1.1 MD03G1038600.v1.1 MD03G1038900.v1.1 MD03G1039000.v1.1 MD03G1039100.v1.1 MD03G1188500.v1.1 MD10G1233100.v1.1 MD10G1233300.v1.1 MD10G1341200.v1.1 MD11G1039200.v1.1 MD11G1039300.v1.1 MD11G1204400.v1.1 MD11G1204600.v1.1
prunus_persica Prupe.2G123900_v2.0.a1 Prupe.4G001900_v2.0.a1 Prupe.4G234700_v2.0.a1 Prupe.4G234800_v2.0.a1 Prupe.6G025900_v2.0.a1 Prupe.6G030200_v2.0.a1 Prupe.6G030300_v2.0.a1 Prupe.6G030400_v2.0.a1 Prupe.6G030600_v2.0.a1 Prupe.6G030900_v2.0.a1 Prupe.6G031000_v2.0.a1 Prupe.6G031100_v2.0.a1 Prupe.6G031100_v2.0.a1
pyrus_communis pycom03g02940 pycom03g02950 pycom03g02980 pycom03g02990 pycom03g03010 pycom11g03310 pycom11g03320
rosa_chinensis RchiOBHm_Chr3g0484311 RchiOBHm_Chr5g0000231 RchiOBHm_Chr5g0042661 RchiOBHm_Chr5g0042671 RchiOBHm_Chr5g0075281 RchiOBHm_Chr5g0075291 RchiOBHm_Chr5g0075321 RchiOBHm_Chr5g0075331
rosa_laevigata RLG00000034149 RLG00000036545 RLG00000036546 RLG00000036547 RLG00000036548 RLG00000036549 RLG00000036550
rosa_multiflora Rmu_sc0000295.1_g000011 Rmu_sc0000770.1_g000041 Rmu_sc0000770.1_g000049 Rmu_sc0002564.1_g000002 Rmu_sc0002564.1_g000003 Rmu_sc0002564.1_g000016
rosa_roxburghii Rroxscaffold_1G00006200 Rroxscaffold_1G00006210 Rroxscaffold_1G00006220 Rroxscaffold_1G00006250 Rroxscaffold_1G00006270 Rroxscaffold_1G00037900 Rroxscaffold_1G00037980 Rroxscaffold_6G00397790
rosa_rugosa Rorug03G0210600 Rorug05G0203800 Rorug05G0203900 Rorug05G0438100 Rorug05G0438200 Rorug05G0438700 Rorug05G0438900 Rorug05G0438900
rosa_samantha Rh3AG259700 Rh3AG259800 Rh3BG296300 Rh3DG289900 Rh5AG001600 Rh5AG288900 Rh5AG289000 Rh5AG289200 Rh5AG494800 Rh5AG495000 Rh5AG495200 Rh5AG495300 Rh5BG293000 Rh5BG293100 Rh5BG293300 Rh5BG516400 Rh5BG516500 Rh5BG516900 Rh5BG517000 Rh5CG001900 Rh5CG325700 Rh5CG325900 Rh5CG326000 Rh5CG540200 Rh5CG540300 Rh5CG540500 Rh5CG540600 Rh5DG001900 Rh5DG302900 Rh5DG303000 Rh5DG303200 Rh5DG529100 Rh5DG529300 Rh5DG529400 Rh5DG532500
rosa_wichuraiana Rw3G023420 Rw3G023430 Rw5G000210 Rw5G026800 Rw5G045910 Rw5G045920 Rw5G045930 Rw5G045940 Rw5G045950

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 97
AccII CGCG 2 cut(s) 30, 39
AciI CCGC 1 cut(s) 71
AclWI GGATC 1 cut(s) 199
AcoI YGGCCR 1 cut(s) 72
AdeI CACNNNGTG 1 cut(s) 86
AfiI CCNNNNNNNGG 1 cut(s) 169
AhlI ACTAGT 1 cut(s) 16
AjnI CCWGG 1 cut(s) 82
AluBI AGCT 1 cut(s) 187
AluI AGCT 1 cut(s) 187
AlwI GGATC 1 cut(s) 199
AoxI GGCC 1 cut(s) 72
AspLEI GCGC 1 cut(s) 30
AsuHPI GGTGA 2 cut(s) 122, 145
BccI CCATC 1 cut(s) 137
BciT130I CCWGG 1 cut(s) 84
BcuI ACTAGT 1 cut(s) 16
BfaI CTAG 2 cut(s) 17, 168
BisI GCNGC 1 cut(s) 72
BlsI GCNGC 1 cut(s) 73
Bme1390I CCNGG 1 cut(s) 84
BmrFI CCNGG 1 cut(s) 84
BsaJI CCNNGG 1 cut(s) 54
Bsc4I CCNNNNNNNGG 1 cut(s) 169
BseBI CCWGG 1 cut(s) 84
BseDI CCNNGG 1 cut(s) 54
BseGI GGATG 1 cut(s) 148
BseLI CCNNNNNNNGG 1 cut(s) 169
BsgI GTGCAG 1 cut(s) 63
Bsh1236I CGCG 2 cut(s) 30, 39
BshFI GGCC 1 cut(s) 74
BslI CCNNNNNNNGG 1 cut(s) 169
BsnI GGCC 1 cut(s) 74
Bsp143I GATC 3 cut(s) 121, 191, 224
Bsp68I TCGCGA 1 cut(s) 39
BspACI CCGC 1 cut(s) 71
BspANI GGCC 1 cut(s) 74
BspFNI CGCG 2 cut(s) 30, 39
BspHI TCATGA 1 cut(s) 227
BspPI GGATC 1 cut(s) 199
BssECI CCNNGG 1 cut(s) 54
BssMI GATC 3 cut(s) 121, 191, 224
BssT1I CCWWGG 1 cut(s) 54
Bst2UI CCWGG 1 cut(s) 84
BstF5I GGATG 1 cut(s) 148
BstFNI CGCG 2 cut(s) 30, 39
BstHHI GCGC 1 cut(s) 30
BstKTI GATC 3 cut(s) 124, 194, 227
BstMBI GATC 3 cut(s) 121, 191, 224
BstMWI GCNNNNNNNGC 3 cut(s) 36, 45, 77
BstNI CCWGG 1 cut(s) 84
BstSCI CCNGG 1 cut(s) 82
BstUI CGCG 2 cut(s) 30, 39
BstX2I RGATCY 1 cut(s) 191
BstYI RGATCY 1 cut(s) 191
BsuRI GGCC 1 cut(s) 74
BtgZI GCGATG 1 cut(s) 20
BtsCI GGATG 1 cut(s) 148
BtsI GCAGTG 1 cut(s) 75
BtsIMutI CAGTG 1 cut(s) 75
BtuMI TCGCGA 1 cut(s) 39
CciI TCATGA 1 cut(s) 227
CfoI GCGC 1 cut(s) 30
CsiI ACCWGGT 1 cut(s) 82
CviAII CATG 2 cut(s) 125, 228
CviJI RGCY 4 cut(s) 59, 74, 173, 187
CviKI_1 RGCY 4 cut(s) 59, 74, 173, 187
DpnI GATC 3 cut(s) 123, 193, 226
DpnII GATC 3 cut(s) 121, 191, 224
DraIII CACNNNGTG 1 cut(s) 86
DrdI GACNNNNNNGTC 1 cut(s) 97
DseDI GACNNNNNNGTC 1 cut(s) 97
EaeI YGGCCR 1 cut(s) 72
Eco130I CCWWGG 1 cut(s) 54
EcoRII CCWGG 1 cut(s) 82
EcoT14I CCWWGG 1 cut(s) 54
ErhI CCWWGG 1 cut(s) 54
FaeI CATG 2 cut(s) 128, 231
FaiI YATR 5 cut(s) 62, 126, 176, 203, 229
FatI CATG 2 cut(s) 124, 227
Fnu4HI GCNGC 1 cut(s) 72
FokI GGATG 1 cut(s) 155
Fsp4HI GCNGC 1 cut(s) 72
FspBI CTAG 2 cut(s) 17, 168
GlaI GCGC 1 cut(s) 29
GluI GCNGC 1 cut(s) 72
HaeIII GGCC 1 cut(s) 74
HhaI GCGC 1 cut(s) 30
Hin1II CATG 2 cut(s) 128, 231
Hin6I GCGC 1 cut(s) 28
HinP1I GCGC 1 cut(s) 28
HincII GTYRAC 1 cut(s) 151
HindII GTYRAC 1 cut(s) 151
HindIII AAGCTT 1 cut(s) 185
HinfI GANTC 1 cut(s) 152
HphI GGTGA 2 cut(s) 122, 145
Hpy166II GTNNAC 1 cut(s) 151
Hpy188III TCNNGA 2 cut(s) 38, 228
Hpy8I GTNNAC 1 cut(s) 151
HpyCH4V TGCA 3 cut(s) 7, 48, 80
HpyF10VI GCNNNNNNNGC 3 cut(s) 36, 45, 77
Hsp92II CATG 2 cut(s) 128, 231
HspAI GCGC 1 cut(s) 28
Kzo9I GATC 3 cut(s) 121, 191, 224
LpnPI CCDG 3 cut(s) 69, 96, 176
MabI ACCWGGT 1 cut(s) 82
MaeI CTAG 2 cut(s) 17, 168
MaeIII GTNAC 1 cut(s) 88
MalI GATC 3 cut(s) 123, 193, 226
MboI GATC 3 cut(s) 121, 191, 224
MboII GAAGA 3 cut(s) 76, 125, 193
MflI RGATCY 1 cut(s) 191
MlyI GAGTC 1 cut(s) 146
MnlI CCTC 2 cut(s) 124, 171
MspR9I CCNGG 1 cut(s) 84
MvaI CCWGG 1 cut(s) 84
MvnI CGCG 2 cut(s) 30, 39
MwoI GCNNNNNNNGC 3 cut(s) 36, 45, 77
NdeII GATC 3 cut(s) 121, 191, 224
NlaIII CATG 2 cut(s) 128, 231
NmuCI GTSAC 1 cut(s) 88
NruI TCGCGA 1 cut(s) 39
PagI TCATGA 1 cut(s) 227
PkrI GCNGC 1 cut(s) 73
PleI GAGTC 1 cut(s) 146
PpsI GAGTC 1 cut(s) 146
Psp6I CCWGG 1 cut(s) 82
PspGI CCWGG 1 cut(s) 82
PsuI RGATCY 1 cut(s) 191
RruI TCGCGA 1 cut(s) 39
SatI GCNGC 1 cut(s) 72
Sau3AI GATC 3 cut(s) 121, 191, 224
SchI GAGTC 1 cut(s) 146
ScrFI CCNGG 1 cut(s) 84
SetI ASST 5 cut(s) 85, 112, 135, 189, 213
SexAI ACCWGGT 1 cut(s) 82
SpeI ACTAGT 1 cut(s) 16
SsiI CCGC 1 cut(s) 71
SspMI CTAG 2 cut(s) 17, 168
StyD4I CCNGG 1 cut(s) 82
StyI CCWWGG 1 cut(s) 54
TaqI TCGA 1 cut(s) 213
TauI GCSGC 1 cut(s) 74
TscAI CASTG 1 cut(s) 82
TseFI GTSAC 1 cut(s) 88
Tsp45I GTSAC 1 cut(s) 88
TspDTI ATGAA 2 cut(s) 23, 77
TspRI CASTG 1 cut(s) 82
XspI CTAG 2 cut(s) 17, 168
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.